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(-) Description

Title :  CRYSTAL STRUCTURE OF THROMBIN ACTIVATABLE FIBRINOLYSIS INHIBITOR (TAFI)
 
Authors :  K. Anand, I. Pallares, Z. Valnickova, T. Christensen, H. Schreuder, J.
Date :  16 Jun 08  (Deposition) - 22 Jul 08  (Release) - 08 Feb 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym. Unit :  A,B,C
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  A  (1x)
Biol. Unit 3:  B  (1x)
Biol. Unit 4:  C  (1x)
Keywords :  Blood Coagulation, Fibrinolysis, Carboxypeptidase, Protein Stability, Glycoprotein, Hydrolase, Metal-Binding, Metalloprotease, Protease, Secreted, Zymogen (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. Anand, I. Pallares, Z. Valnickova, T. Christensen, J. Vendrell, K. U. Wendt, H. A. Schreuder, J. J. Enghild, F. X. Avil S
The Crystal Structure Of Tafi Provides The Structural Basis For The Intrinsic Activity Of The Proenzyme And Short Half-Life Of Tafia
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - CARBOXYPEPTIDASE B2
    Chains: A, B, C
    EC Number: 3.4.17.20
    Organism Common: BOVINE,COW,DOMESTIC CATTLE,DOMESTIC COW
    Organism Scientific: BOS TAURUS
    Organism Taxid: 9913
    Synonym: TAFI

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit : ABC
Biological Unit 1 (1x): AB 
Biological Unit 2 (1x): A  
Biological Unit 3 (1x):  B 
Biological Unit 4 (1x):   C

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (7, 46)

Asymmetric Unit (7, 46)
No.NameCountTypeFull Name
1BMA1Ligand/IonBETA-D-MANNOSE
2FUL2Ligand/IonBETA-L-FUCOSE
3MLI3Ligand/IonMALONATE ION
4NAG11Ligand/IonN-ACETYL-D-GLUCOSAMINE
5NDG4Ligand/Ion2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
6SO422Ligand/IonSULFATE ION
7ZN3Ligand/IonZINC ION
Biological Unit 1 (6, 39)
No.NameCountTypeFull Name
1BMA1Ligand/IonBETA-D-MANNOSE
2FUL2Ligand/IonBETA-L-FUCOSE
3MLI2Ligand/IonMALONATE ION
4NAG11Ligand/IonN-ACETYL-D-GLUCOSAMINE
5NDG3Ligand/Ion2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
6SO420Ligand/IonSULFATE ION
7ZN-1Ligand/IonZINC ION
Biological Unit 2 (5, 19)
No.NameCountTypeFull Name
1BMA-1Ligand/IonBETA-D-MANNOSE
2FUL2Ligand/IonBETA-L-FUCOSE
3MLI1Ligand/IonMALONATE ION
4NAG5Ligand/IonN-ACETYL-D-GLUCOSAMINE
5NDG2Ligand/Ion2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
6SO49Ligand/IonSULFATE ION
7ZN-1Ligand/IonZINC ION
Biological Unit 3 (5, 20)
No.NameCountTypeFull Name
1BMA1Ligand/IonBETA-D-MANNOSE
2FUL-1Ligand/IonBETA-L-FUCOSE
3MLI1Ligand/IonMALONATE ION
4NAG6Ligand/IonN-ACETYL-D-GLUCOSAMINE
5NDG1Ligand/Ion2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
6SO411Ligand/IonSULFATE ION
7ZN-1Ligand/IonZINC ION
Biological Unit 4 (3, 4)
No.NameCountTypeFull Name
1BMA-1Ligand/IonBETA-D-MANNOSE
2FUL-1Ligand/IonBETA-L-FUCOSE
3MLI1Ligand/IonMALONATE ION
4NAG-1Ligand/IonN-ACETYL-D-GLUCOSAMINE
5NDG1Ligand/Ion2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
6SO42Ligand/IonSULFATE ION
7ZN-1Ligand/IonZINC ION

(-) Sites  (41, 41)

Asymmetric Unit (41, 41)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASN A:51A , SER A:53ABINDING SITE FOR RESIDUE NAG A 309
02AC2SOFTWAREARG A:3ABINDING SITE FOR RESIDUE NDG A 310
03AC3SOFTWAREASN A:63ABINDING SITE FOR RESIDUE NAG A 311
04AC4SOFTWARESER A:85A , ASN A:86A , ILE A:89ABINDING SITE FOR RESIDUE NAG A 313
05AC5SOFTWAREARG B:3A , LYS B:28A , ASN B:51A , SER B:53ABINDING SITE FOR RESIDUE NAG B 309
06AC6SOFTWAREARG B:3ABINDING SITE FOR RESIDUE NAG B 310
07AC7SOFTWAREASN B:63A , ALA B:64ABINDING SITE FOR RESIDUE NAG B 312
08AC8SOFTWARESER B:85A , ASN B:86A , ILE B:89ABINDING SITE FOR RESIDUE NAG B 314
09AC9SOFTWAREARG B:81A , GLN B:82ABINDING SITE FOR RESIDUE NAG B 315
10BC1SOFTWAREGLN A:18A , ILE A:19A , ASN A:22ABINDING SITE FOR RESIDUE NDG A 315
11BC3SOFTWAREASN A:22A , THR A:26ABINDING SITE FOR RESIDUE FUL A 317
12BC4SOFTWAREASN B:22ABINDING SITE FOR RESIDUE NAG B 316
13BC5SOFTWAREGLN C:2A , ARG C:3A , ASN C:51A , SER C:53ABINDING SITE FOR RESIDUE NDG C 309
14BC6SOFTWAREHIS A:69 , GLU A:72 , HIS A:196BINDING SITE FOR RESIDUE ZN A 318
15BC7SOFTWAREHIS B:69 , GLU B:72 , HIS B:196BINDING SITE FOR RESIDUE ZN B 317
16BC8SOFTWAREHIS C:69 , GLU C:72 , HIS C:196BINDING SITE FOR RESIDUE ZN C 310
17BC9SOFTWARELYS A:122 , ASN B:136 , ALA B:137 , SER B:159 , SER B:160BINDING SITE FOR RESIDUE SO4 B 318
18CC1SOFTWAREALA A:137 , SER A:159 , SER A:160 , LYS B:122BINDING SITE FOR RESIDUE SO4 A 319
19CC2SOFTWARELYS A:150 , HIS A:150B , SER A:209 , SER A:211 , LYS A:214BINDING SITE FOR RESIDUE SO4 A 320
20CC3SOFTWAREARG A:237 , TYR B:44A , GLU B:45ABINDING SITE FOR RESIDUE SO4 B 319
21CC4SOFTWAREHIS B:133 , GLU B:134BINDING SITE FOR RESIDUE SO4 B 320
22CC5SOFTWARETYR A:44A , GLU A:45ABINDING SITE FOR RESIDUE SO4 A 321
23CC6SOFTWAREHIS A:216 , SER A:220 , ARG A:224BINDING SITE FOR RESIDUE SO4 A 322
24CC7SOFTWAREHIS A:133 , GLU A:134BINDING SITE FOR RESIDUE SO4 A 323
25CC8SOFTWARETHR B:13A , SER B:14A , LYS B:42ABINDING SITE FOR RESIDUE SO4 B 321
26CC9SOFTWARETHR A:13A , ARG A:15A , GLN A:16A , ARG A:66ABINDING SITE FOR RESIDUE SO4 A 324
27DC1SOFTWAREHIS C:133 , GLU C:134BINDING SITE FOR RESIDUE SO4 C 311
28DC2SOFTWAREHIS B:150B , TYR B:208 , SER B:209BINDING SITE FOR RESIDUE SO4 B 322
29DC3SOFTWARELYS A:276 , ILE B:233 , HIS B:234 , ARG B:235 , ASN B:235BBINDING SITE FOR RESIDUE SO4 B 323
30DC4SOFTWAREHIS B:216 , SER B:220 , ARG B:224 , GLU B:245BINDING SITE FOR RESIDUE SO4 B 324
31DC5SOFTWARETHR A:13A , SER A:14A , LYS A:42ABINDING SITE FOR RESIDUE SO4 A 325
32DC6SOFTWAREGLY A:39 , SER A:40BINDING SITE FOR RESIDUE SO4 A 326
33DC7SOFTWAREARG A:237 , ARG B:237 , LYS B:274BINDING SITE FOR RESIDUE SO4 B 325
34DC8SOFTWARELYS A:274 , ARG B:237BINDING SITE FOR RESIDUE SO4 B 326
35DC9SOFTWARETHR B:13A , ARG B:15A , GLN B:16A , ARG B:66ABINDING SITE FOR RESIDUE SO4 B 327
36EC1SOFTWAREILE A:233 , HIS A:234 , ARG A:235 , LYS B:276BINDING SITE FOR RESIDUE SO4 A 327
37EC2SOFTWARELYS C:122 , ASN C:136 , ALA C:137 , SER C:159 , SER C:160BINDING SITE FOR RESIDUE SO4 C 312
38EC3SOFTWARELYS A:306 , ARG B:12A , ARG B:66ABINDING SITE FOR RESIDUE SO4 B 328
39EC4SOFTWAREHIS A:69 , GLU A:72 , ARG A:127 , ARG A:145 , GLU A:270BINDING SITE FOR RESIDUE MLI A 328
40EC5SOFTWAREHIS B:69 , GLU B:72 , ARG B:127 , ASN B:144 , ARG B:145 , HIS B:196 , GLU B:270BINDING SITE FOR RESIDUE MLI B 329
41EC6SOFTWAREHIS C:69 , ARG C:127 , ASN C:144 , ARG C:145 , TYR C:248BINDING SITE FOR RESIDUE MLI C 313

(-) SS Bonds  (9, 9)

Asymmetric Unit
No.Residues
1A:66 -A:79
2A:138 -A:161
3A:152 -A:166
4B:66 -B:79
5B:138 -B:161
6B:152 -B:166
7C:66 -C:79
8C:138 -C:161
9C:152 -C:166

(-) Cis Peptide Bonds  (12, 12)

Asymmetric Unit
No.Residues
1Gln A:33A-Pro A:34A
2Ser A:197 -Tyr A:198
3Pro A:205 -Tyr A:206
4Arg A:272 -Asp A:273
5Gln B:33A-Pro B:34A
6Ser B:197 -Tyr B:198
7Pro B:205 -Tyr B:206
8Arg B:272 -Asp B:273
9Gln C:33A-Pro C:34A
10Ser C:197 -Tyr C:198
11Pro C:205 -Tyr C:206
12Arg C:272 -Asp C:273

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3DGV)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3DGV)

(-) Exons   (0, 0)

(no "Exon" information available for 3DGV)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:401
 aligned with CBPB2_BOVIN | Q2KIG3 from UniProtKB/Swiss-Prot  Length:423

    Alignment length:401
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422 
         CBPB2_BOVIN     23 FQRGQVLSALPRTSRQVQILQNVTTTYKIVLWQPVAAEYIVKGYEVHFFVNASDVSNVKAHLNASRIPFRVLVENVEDLIRQQTSNDTISPRASSSYYEQYHSLNEIYSWIEVMTERYPDMVEKIHIGSSYEKYPLYVLKVSKKEQRAKNAMWIDCGIHAREWISPAFCLWFVGSVTYYYGKEKMHTNLLKHMDFYIMPVVNVDGYDYTWKKDRMWRKNRSLHEKNACVGTDLNRNFASKHWCGEGASSSSCSEIYCGTYPESEPEVKAVADFLRRNIKHIKAYISMHSYSQKIVFPYSYSRSRSKDHEELSLVAREAVFAMENIHRNIRYTHGSGSESLYLAPGGSDDWIYDLGIKYSFTFELRDKGKYGFLLPESYIRPTCSEALVAVAKIASHVVKNV  423
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------3dgvA02 A:4-308 Zn peptidases                                                                                                                                                                                                                                                                                         CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee...hhhhhhhhhhhhhhh.eeeee..hhhhh.....eeeeee..hhhhhhhhhhhh...eeeee.hhhhhhhhhh...........hhhhh..hhhhhhhhhhhhhhhh...eeeeeeee.....eeeeeee........eeeeeee......hhhhhhhhhhhhhhhhhh..hhhhhhhhhheeeeee...hhhhhhhhhhh...................hhhhh...........................hhhhhhhhhhhhhh...eeeeeeee....eeee..........hhhhhhhhhhhhhhhhhhhh.....eeee.hhh......hhhhhhhh....eeeeee...........hhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3dgv A   1A FQRGQVLSALPRTSRQVQILQNVTTTYKIVLWQPVAAEYIVKGYEVHFFVNASDVSNVKAHLNASRIPFRVLVENVEDLIRQQTSNDTISPRASSSYYEQYHSLNEIYSWIEVMTERYPDMVEKIHIGSSYEKYPLYVLKVSKKEQRAKNAMWIDCGIHAREWISPAFCLWFVGSVTYYYGKEKMHTNLLKHMDFYIMPVVNVDGYDYTWKKDRMWRKNRSLHEKNACVGTDLNRNFASKHWCGEGASSSSCSEIYCGTYPESEPEVKAVADFLRRNIKHIKAYISMHSYSQKIVFPYSYSRSRSKDHEELSLVAREAVFAMENIHRNIRYTHGSGSESLYLAPGGSDDWIYDLGIKYSFTFELRDKGKYGFLLPESYIRPTCSEALVAVAKIASHVVKNV  308
                            |||||||10A|||||||20A|||||||30A|||||||40A|||||||50A|||||||60A|||||||70A|||||||80A|||||||90A|||     11        21        31        41        51      | 60        70        80        90       100       110       120       130       140       150|      159       169       179      188B       198       208       218       228       237       247       257       267       277       287       297       307 
                            |||||||9A||||||18A||||||27A||||||36A||||||45A||||||54A||||||63A||||||72A||||||81A||||||90A|||                                                   57B                                                                                          150B                                   188B                                            235B                                                                         
                           1A||||||10A||||||19A||||||28A||||||37A||||||46A||||||55A||||||64A||||||73A||||||82A||||||91A||                                                                                                                                                                                                                                                                                                                    
                            2A||||||11A||||||20A||||||29A||||||38A||||||47A||||||56A||||||65A||||||74A||||||83A||||||92A|                                                                                                                                                                                                                                                                                                                    
                             3A||||| 12A||||| 21A||||| 30A||||| 39A||||| 48A||||| 57A||||| 66A||||| 75A||||| 84A|||||   4                                                                                                                                                                                                                                                                                                                    
                              4A||||  13A||||  22A||||  31A||||  40A||||  49A||||  58A||||  67A||||  76A||||  85A||||                                                                                                                                                                                                                                                                                                                        
                               5A|||   14A|||   23A|||   32A|||   41A|||   50A|||   59A|||   68A|||   77A|||   86A|||                                                                                                                                                                                                                                                                                                                        
                                6A||    15A||    24A||    33A||    42A||    51A||    60A||    69A||    78A||    87A||                                                                                                                                                                                                                                                                                                                        
                                 7A|     16A|     25A|     34A|     43A|     52A|     61A|     70A|     79A|     88A|                                                                                                                                                                                                                                                                                                                        
                                  8A      17A      26A      35A      44A      53A      62A      71A      80A      89A                                                                                                                                                                                                                                                                                                                        


Chain B from PDB  Type:PROTEIN  Length:401
 aligned with CBPB2_BOVIN | Q2KIG3 from UniProtKB/Swiss-Prot  Length:423

    Alignment length:401
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422 
         CBPB2_BOVIN     23 FQRGQVLSALPRTSRQVQILQNVTTTYKIVLWQPVAAEYIVKGYEVHFFVNASDVSNVKAHLNASRIPFRVLVENVEDLIRQQTSNDTISPRASSSYYEQYHSLNEIYSWIEVMTERYPDMVEKIHIGSSYEKYPLYVLKVSKKEQRAKNAMWIDCGIHAREWISPAFCLWFVGSVTYYYGKEKMHTNLLKHMDFYIMPVVNVDGYDYTWKKDRMWRKNRSLHEKNACVGTDLNRNFASKHWCGEGASSSSCSEIYCGTYPESEPEVKAVADFLRRNIKHIKAYISMHSYSQKIVFPYSYSRSRSKDHEELSLVAREAVFAMENIHRNIRYTHGSGSESLYLAPGGSDDWIYDLGIKYSFTFELRDKGKYGFLLPESYIRPTCSEALVAVAKIASHVVKNV  423
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------3dgvB02 B:4-308 Zn peptidases                                                                                                                                                                                                                                                                                         CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee...hhhhhhhhhhhhh...eeeee..hhhhh.....eeeeee..hhhhhhhhhhhh...eeeee.hhhhhhhhhh..........hhhhhh..hhhhhhhhhhhhhhhh...eeeeeeee.....eeeeeee........eeeeee.......hhhhhhhhhhhhhhhhhh..hhhhhhhhhheeeeee...hhhhhhhhhhh...................hhhhh...........................hhhhhhhhhhhhhh...eeeeeeee....eeee..........hhhhhhhhhhhhhhhhhhhh.....eeee.hhh......hhhhhhhh....eeeeee...........hhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3dgv B   1A FQRGQVLSALPRTSRQVQILQNVTTTYKIVLWQPVAAEYIVKGYEVHFFVNASDVSNVKAHLNASRIPFRVLVENVEDLIRQQTSNDTISPRASSSYYEQYHSLNEIYSWIEVMTERYPDMVEKIHIGSSYEKYPLYVLKVSKKEQRAKNAMWIDCGIHAREWISPAFCLWFVGSVTYYYGKEKMHTNLLKHMDFYIMPVVNVDGYDYTWKKDRMWRKNRSLHEKNACVGTDLNRNFASKHWCGEGASSSSCSEIYCGTYPESEPEVKAVADFLRRNIKHIKAYISMHSYSQKIVFPYSYSRSRSKDHEELSLVAREAVFAMENIHRNIRYTHGSGSESLYLAPGGSDDWIYDLGIKYSFTFELRDKGKYGFLLPESYIRPTCSEALVAVAKIASHVVKNV  308
                            |||||||10A|||||||20A|||||||30A|||||||40A|||||||50A|||||||60A|||||||70A|||||||80A|||||||90A|||     11        21        31        41        51      | 60        70        80        90       100       110       120       130       140       150|      159       169       179      188B       198       208       218       228       237       247       257       267       277       287       297       307 
                           1A||||||10A||||||19A||||||28A||||||37A||||||46A||||||55A||||||64A||||||73A||||||82A||||||91A||                                                   57B                                                                                          150B                                   188B                                            235B                                                                         
                            2A||||||11A||||||20A||||||29A||||||38A||||||47A||||||56A||||||65A||||||74A||||||83A||||||92A|                                                                                                                                                                                                                                                                                                                    
                             3A||||||12A||||||21A||||||30A||||||39A||||||48A||||||57A||||||66A||||||75A||||||84A||||||  4                                                                                                                                                                                                                                                                                                                    
                              4A||||| 13A||||| 22A||||| 31A||||| 40A||||| 49A||||| 58A||||| 67A||||| 76A||||| 85A|||||                                                                                                                                                                                                                                                                                                                       
                               5A||||  14A||||  23A||||  32A||||  41A||||  50A||||  59A||||  68A||||  77A||||  86A||||                                                                                                                                                                                                                                                                                                                       
                                6A|||   15A|||   24A|||   33A|||   42A|||   51A|||   60A|||   69A|||   78A|||   87A|||                                                                                                                                                                                                                                                                                                                       
                                 7A||    16A||    25A||    34A||    43A||    52A||    61A||    70A||    79A||    88A||                                                                                                                                                                                                                                                                                                                       
                                  8A|     17A|     26A|     35A|     44A|     53A|     62A|     71A|     80A|     89A|                                                                                                                                                                                                                                                                                                                       
                                   9A      18A      27A      36A      45A      54A      63A      72A      81A      90A                                                                                                                                                                                                                                                                                                                       


Chain C from PDB  Type:PROTEIN  Length:379
 aligned with CBPB2_BOVIN | Q2KIG3 from UniProtKB/Swiss-Prot  Length:423

    Alignment length:400
                                    33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423
         CBPB2_BOVIN     24 QRGQVLSALPRTSRQVQILQNVTTTYKIVLWQPVAAEYIVKGYEVHFFVNASDVSNVKAHLNASRIPFRVLVENVEDLIRQQTSNDTISPRASSSYYEQYHSLNEIYSWIEVMTERYPDMVEKIHIGSSYEKYPLYVLKVSKKEQRAKNAMWIDCGIHAREWISPAFCLWFVGSVTYYYGKEKMHTNLLKHMDFYIMPVVNVDGYDYTWKKDRMWRKNRSLHEKNACVGTDLNRNFASKHWCGEGASSSSCSEIYCGTYPESEPEVKAVADFLRRNIKHIKAYISMHSYSQKIVFPYSYSRSRSKDHEELSLVAREAVFAMENIHRNIRYTHGSGSESLYLAPGGSDDWIYDLGIKYSFTFELRDKGKYGFLLPESYIRPTCSEALVAVAKIASHVVKNV  423
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -----     ----------------------------     --------------------- -------------------    ---3dgvC02 C:4-308 Zn peptidases                                                                                                                                                                                                                                                                                         CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....-----..hhhhhhhhhhhhhh.eeeee......-----..eeee...hhhhhhhhhhh.-........hhhhhhhhhh.----.............hhhhhhhhhhhhhhhh...eeeeeeee.....eeeeeee....---..eeeee.......hhhhhhhhhhhhhhhhh..............eeeee...hhhhhhhhhh....................hhhhh...........................hhhhhhhhhhhhhhh..eeeeeee......eee..........hhhhhhhhhhhhhhhhh.....---.eee..........hhhhhhhhh....eeee.......hhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3dgv C   2A QRGQV-----RTSRQVQILQNVTTTYKIVLWQPVAAEY-----EVHFFVNASDVSNVKAHLNAS-IPFRVLVENVEDLIRQQTS----SPRASSSYYEQYHSLNEIYSWIEVMTERYPDMVEKIHIGSSYEKYPLYVLKVSKKE---KNAMWIDCGIHAREWISPAFCLWFVGSVTYYYGKEKMHTNLLKHMDFYIMPVVNVDGYDYTWKKDRMWRKNRSLHEKNACVGTDLNRNFASKHWCGEGASSSSCSEIYCGTYPESEPEVKAVADFLRRNIKHIKAYISMHSYSQKIVFPYSYSRSRSKDHEELSLVAREAVFAMENIHRN---THGSGSESLYLAPGGSDDWIYDLGIKYSFTFELRDKGKYGFLLPESYIRPTCSEALVAVAKIASHVVKNV  308
                            |||||    -|||||||21A|||||||31A|||||||| -   ||||51A|||||||61A|||| ||71A|||||||81A||||   91A||      12        22        32        42        52   |   |61        71        81        91       101       111       121       131       141      150B       160       170       180       189       199       209       219       229      |  -|      248       258       268       278       288       298       308
                           2A||||   12A||||||21A||||||30A||||||39A   45A||||||54A||||||63A|| ||||73A||||||82A|||  90A|||                                                  56  59                                                                                        150B                                   188B                                            235B 239                                                                     
                            3A|||    13A||||||22A||||||31A|||||||     46A||||||55A||||||64A| |||||74A||||||83A||   91A||                                                                                                                                                                                                                                                                                                                    
                             4A||     14A||||||23A||||||32A||||||      47A||||||56A||||||65A ||||||75A||||||84A|    92A|                                                                                                                                                                                                                                                                                                                    
                              5A|      15A||||| 24A||||| 33A|||||       48A||||| 57A|||||  67A||||| 76A||||| 85A       4                                                                                                                                                                                                                                                                                                                    
                               6A       16A||||  25A||||  34A||||        49A||||  58A||||   68A||||  77A||||                                                                                                                                                                                                                                                                                                                                
                                         17A|||   26A|||   35A|||         50A|||   59A|||    69A|||   78A|||                                                                                                                                                                                                                                                                                                                                
                                          18A||    27A||    36A||          51A||    60A||     70A||    79A||                                                                                                                                                                                                                                                                                                                                
                                           19A|     28A|     37A|           52A|     61A|      71A|     80A|                                                                                                                                                                                                                                                                                                                                
                                            20A      29A      38A            53A      62A       72A      81A
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3DGV)

(-) CATH Domains  (1, 3)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3DGV)

(-) Gene Ontology  (14, 14)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C   (CBPB2_BOVIN | Q2KIG3)
molecular function
    GO:0004180    carboxypeptidase activity    Catalysis of the hydrolysis of the terminal or penultimate peptide bond at the C-terminal end of a peptide or polypeptide.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0004181    metallocarboxypeptidase activity    Catalysis of the hydrolysis of C-terminal amino acid residues from a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions.
    GO:0008237    metallopeptidase activity    Catalysis of the hydrolysis of peptide bonds by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions.
    GO:0008233    peptidase activity    Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid.
    GO:0008270    zinc ion binding    Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
    GO:0007596    blood coagulation    The sequential process in which the multiple coagulation factors of the blood interact, ultimately resulting in the formation of an insoluble fibrin clot; it may be divided into three stages: stage 1, the formation of intrinsic and extrinsic prothrombin converting principle; stage 2, the formation of thrombin; stage 3, the formation of stable fibrin polymers.
    GO:0042730    fibrinolysis    A process that solubilizes fibrin in the bloodstream of a multicellular organism, chiefly by the proteolytic action of plasmin.
    GO:0007599    hemostasis    The stopping of bleeding (loss of body fluid) or the arrest of the circulation to an organ or part.
    GO:0006508    proteolysis    The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
cellular component
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
    GO:0005615    extracellular space    That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid.

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  3dgv
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  3.4.17.20
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CBPB2_BOVIN | Q2KIG3: 3d4u 3osl

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 3DGV)