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3DGV
Biol. Unit 4
Info
Asym.Unit (231 KB)
Biol.Unit 1 (160 KB)
Biol.Unit 2 (83 KB)
Biol.Unit 3 (82 KB)
Biol.Unit 4 (68 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THROMBIN ACTIVATABLE FIBRINOLYSIS INHIBITOR (TAFI)
Authors
:
K. Anand, I. Pallares, Z. Valnickova, T. Christensen, H. Schreuder, J.
Date
:
16 Jun 08 (Deposition) - 22 Jul 08 (Release) - 08 Feb 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B (1x)
Biol. Unit 2: A (1x)
Biol. Unit 3: B (1x)
Biol. Unit 4: C (1x)
Keywords
:
Blood Coagulation, Fibrinolysis, Carboxypeptidase, Protein Stability, Glycoprotein, Hydrolase, Metal-Binding, Metalloprotease, Protease, Secreted, Zymogen
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
K. Anand, I. Pallares, Z. Valnickova, T. Christensen, J. Vendrell, K. U. Wendt, H. A. Schreuder, J. J. Enghild, F. X. Avil S
The Crystal Structure Of Tafi Provides The Structural Basis For The Intrinsic Activity Of The Proenzyme And Short Half-Life Of Tafia
To Be Published
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Hetero Components
(3, 4)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
2a: BETA-L-FUCOSE (FULa)
2b: BETA-L-FUCOSE (FULb)
3a: MALONATE ION (MLIa)
3b: MALONATE ION (MLIb)
3c: MALONATE ION (MLIc)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4c: N-ACETYL-D-GLUCOSAMINE (NAGc)
4d: N-ACETYL-D-GLUCOSAMINE (NAGd)
4e: N-ACETYL-D-GLUCOSAMINE (NAGe)
4f: N-ACETYL-D-GLUCOSAMINE (NAGf)
4g: N-ACETYL-D-GLUCOSAMINE (NAGg)
4h: N-ACETYL-D-GLUCOSAMINE (NAGh)
4i: N-ACETYL-D-GLUCOSAMINE (NAGi)
4j: N-ACETYL-D-GLUCOSAMINE (NAGj)
4k: N-ACETYL-D-GLUCOSAMINE (NAGk)
5a: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGa)
5b: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGb)
5c: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGc)
5d: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGd)
6a: SULFATE ION (SO4a)
6b: SULFATE ION (SO4b)
6c: SULFATE ION (SO4c)
6d: SULFATE ION (SO4d)
6e: SULFATE ION (SO4e)
6f: SULFATE ION (SO4f)
6g: SULFATE ION (SO4g)
6h: SULFATE ION (SO4h)
6i: SULFATE ION (SO4i)
6j: SULFATE ION (SO4j)
6k: SULFATE ION (SO4k)
6l: SULFATE ION (SO4l)
6m: SULFATE ION (SO4m)
6n: SULFATE ION (SO4n)
6o: SULFATE ION (SO4o)
6p: SULFATE ION (SO4p)
6q: SULFATE ION (SO4q)
6r: SULFATE ION (SO4r)
6s: SULFATE ION (SO4s)
6t: SULFATE ION (SO4t)
6u: SULFATE ION (SO4u)
6v: SULFATE ION (SO4v)
7a: ZINC ION (ZNa)
7b: ZINC ION (ZNb)
7c: ZINC ION (ZNc)
View:
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Label:
No.
Name
Count
Type
Full Name
1
BMA
-1
Ligand/Ion
BETA-D-MANNOSE
2
FUL
-1
Ligand/Ion
BETA-L-FUCOSE
3
MLI
1
Ligand/Ion
MALONATE ION
4
NAG
-1
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
5
NDG
1
Ligand/Ion
2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
6
SO4
2
Ligand/Ion
SULFATE ION
7
ZN
-1
Ligand/Ion
ZINC ION
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Sites
(5, 5)
Info
All Sites
1: BC5 (SOFTWARE)
2: BC8 (SOFTWARE)
3: DC1 (SOFTWARE)
4: EC2 (SOFTWARE)
5: EC6 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
BC5
SOFTWARE
GLN C:2A , ARG C:3A , ASN C:51A , SER C:53A
BINDING SITE FOR RESIDUE NDG C 309
2
BC8
SOFTWARE
HIS C:69 , GLU C:72 , HIS C:196
BINDING SITE FOR RESIDUE ZN C 310
3
DC1
SOFTWARE
HIS C:133 , GLU C:134
BINDING SITE FOR RESIDUE SO4 C 311
4
EC2
SOFTWARE
LYS C:122 , ASN C:136 , ALA C:137 , SER C:159 , SER C:160
BINDING SITE FOR RESIDUE SO4 C 312
5
EC6
SOFTWARE
HIS C:69 , ARG C:127 , ASN C:144 , ARG C:145 , TYR C:248
BINDING SITE FOR RESIDUE MLI C 313
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(0, 0)
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CATH Domains
(1, 3)
Info
all CATH domains
1a: CATH_3dgvC02 (C:4-308)
1b: CATH_3dgvA02 (A:4-308)
1c: CATH_3dgvB02 (B:4-308)
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Organisms
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Aminopeptidase
(284)
Homologous Superfamily
:
Zn peptidases
(137)
Bovine,cow,domestic cattle,domestic cow (Bos taurus)
(1)
1a
3dgvC02
C:4-308
1b
3dgvA02
A:4-308
1c
3dgvB02
B:4-308
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Pfam Domains
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Chain C
Asymmetric Unit 1
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Show PDB file:
Asym.Unit (231 KB)
Header - Asym.Unit
Biol.Unit 1 (160 KB)
Header - Biol.Unit 1
Biol.Unit 2 (83 KB)
Header - Biol.Unit 2
Biol.Unit 3 (82 KB)
Header - Biol.Unit 3
Biol.Unit 4 (68 KB)
Header - Biol.Unit 4
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