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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF THROMBIN ACTIVATABLE FIBRINOLYSIS INHIB (TAFI)
Keywords BLOOD COAGULATION, FIBRINOLYSIS, CARBOXYPEPTIDASE, PROTEIN S GLYCOPROTEIN, HYDROLASE, METAL-BINDING, METALLOPROTEASE, PR SECRETED, ZYMOGEN
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   3DGV     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   CARBOXYPEPTIDASE B2  A 401 3278 0
2  Protein   CARBOXYPEPTIDASE B2  B 401 3275 0
3  Protein   CARBOXYPEPTIDASE B2  C 379 3068 0
4  Ligand    D 2 0 28
5  Ligand    E 2 0 24
6  Ligand    F 2 0 28
7  Ligand    G 3 0 38
8  Ligand    H 3 0 39
9  Ligand    I 2 0 28
10  Ligand    J 2 0 28
11  Ligand   CARBOXYPEPTIDASE B2  A 11 0 53
12  Ligand   CARBOXYPEPTIDASE B2  B 14 0 77
13  Ligand   CARBOXYPEPTIDASE B2  C 5 0 32
14 Water     1019 0 1019
total       2246 9621 1394
Proteins
Unit 1 PHE1A GLN2A ARG3A ALA4 GLY4A SER5 GLN5A SER6 VAL6A SER7 LEU7A TYR8 SER8A TYR9 ALA9A GLU10 LEU10A GLN11 PRO11A TYR12 ARG12A HIS13 THR13A SER14 SER14A LEU15 ARG15A ASN16 GLN16A GLU17 VAL17A ILE18 GLN18A TYR19 ILE19A SER20 LEU20A TRP21 GLN21A ILE22 ASN22A GLU23 VAL23A VAL24 THR24A MET25 THR25A THR26 THR26A GLU27 TYR27A ARG28 LYS28A TYR29 ILE29A PRO30 VAL30A ASP31 LEU31A MET32 TRP32A VAL33 GLN33A GLU34 PRO34A LYS35 VAL35A ILE36 ALA36A HIS37 ALA37A ILE38 GLU38A GLY39 TYR39A SER40 ILE40A SER41 VAL41A TYR42 LYS42A GLU43 GLY43A LYS44 TYR44A TYR45 GLU45A PRO46 VAL46A LEU47 HIS47A TYR48 PHE48A VAL49 PHE49A LEU50 VAL50A LYS51 ASN51A VAL52 ALA52A SER53 SER53A LYS54 ASP54A LYS55 VAL55A GLU56 SER56A GLN57 ASN57A ARG57B ALA58 VAL58A LYS59 LYS59A ASN60 ALA60A ALA61 HIS61A MET62 LEU62A TRP63 ASN63A ILE64 ALA64A ASP65 SER65A CYS66 ARG66A GLY67 ILE67A ILE68 PRO68A HIS69 PHE69A ALA70 ARG70A ARG71 VAL71A GLU72 LEU72A TRP73 VAL73A ILE74 GLU74A SER75 ASN75A PRO76 VAL76A ALA77 GLU77A PHE78 ASP78A CYS79 LEU79A LEU80 ILE80A TRP81 ARG81A PHE82 GLN82A VAL83 GLN83A GLY84 THR84A SER85 SER85A VAL86 ASN86A THR87 ASP87A TYR88 THR88A TYR89 ILE89A TYR90 SER90A GLY91 PRO91A LYS92 ARG92A GLU93 LYS94 MET95 HIS96 THR97 ASN98 LEU99 LEU100 LYS101 HIS102 MET103 ASP104 PHE105 TYR106 ILE107 MET108 PRO109 VAL110 VAL111 ASN112 VAL113 ASP114 GLY115 TYR116 ASP117 TYR118 THR119 TRP120 LYS121 LYS122 ASP123 ARG124 MET125 TRP126 ARG127 LYS128 ASN129 ARG130 SER131 LEU132 HIS133 GLU134 LYS135 ASN136 ALA137 CYS138 VAL139 GLY140 THR141 ASP142 LEU143 ASN144 ARG145 ASN146 PHE147 ALA148 SER149 LYS150 HIS150B TRP151 CYS152 GLY153 GLU154 GLY155 ALA156 SER157 SER158 SER159 SER160 CYS161 SER162 GLU163 ILE164 TYR165 CYS166 GLY167 THR168 TYR169 PRO170 GLU171 SER172 GLU173 PRO174 GLU175 VAL176 LYS177 ALA178 VAL179 ALA180 ASP181 PHE182 LEU183 ARG184 ARG185 ASN186 ILE187 LYS188 HIS188B ILE189 LYS190 ALA191 TYR192 ILE193 SER194 MET195 HIS196 SER197 TYR198 SER199 GLN200 LYS201 ILE202 VAL203 PHE204 PRO205 TYR206 SER207 TYR208 SER209 ARG210 SER211 ARG212 SER213 LYS214 ASP215 HIS216 GLU217 GLU218 LEU219 SER220 LEU221 VAL222 ALA223 ARG224 GLU225 ALA226 VAL227 PHE228 ALA229 MET230 GLU231 ASN232 ILE233 HIS234 ARG235 ASN235B ILE236 ARG237 TYR238 THR239 HIS240 GLY241 SER242 GLY243 SER244 GLU245 SER246 LEU247 TYR248 LEU249 ALA250 PRO251 GLY252 GLY253 SER254 ASP255 ASP256 TRP257 ILE258 TYR259 ASP260 LEU261 GLY262 ILE263 LYS264 TYR265 SER266 PHE267 THR268 PHE269 GLU270 LEU271 ARG272 ASP273 LYS274 GLY275 LYS276 TYR277 GLY278 PHE279 LEU280 LEU281 PRO282 GLU283 SER284 TYR285 ILE286 ARG287 PRO288 THR289 CYS290 SER291 GLU292 ALA293 LEU294 VAL295 ALA296 VAL297 ALA298 LYS299 ILE300 ALA301 SER302 HIS303 VAL304 VAL305 LYS306 ASN307 VAL308
Unit 2 PHE1A GLN2A ARG3A ALA4 GLY4A SER5 GLN5A SER6 VAL6A SER7 LEU7A TYR8 SER8A TYR9 ALA9A GLU10 LEU10A GLN11 PRO11A TYR12 ARG12A HIS13 THR13A SER14 SER14A LEU15 ARG15A ASN16 GLN16A GLU17 VAL17A ILE18 GLN18A TYR19 ILE19A SER20 LEU20A TRP21 GLN21A ILE22 ASN22A GLU23 VAL23A VAL24 THR24A MET25 THR25A THR26 THR26A GLU27 TYR27A ARG28 LYS28A TYR29 ILE29A PRO30 VAL30A ASP31 LEU31A MET32 TRP32A VAL33 GLN33A GLU34 PRO34A LYS35 VAL35A ILE36 ALA36A HIS37 ALA37A ILE38 GLU38A GLY39 TYR39A SER40 ILE40A SER41 VAL41A TYR42 LYS42A GLU43 GLY43A LYS44 TYR44A TYR45 GLU45A PRO46 VAL46A LEU47 HIS47A TYR48 PHE48A VAL49 PHE49A LEU50 VAL50A LYS51 ASN51A VAL52 ALA52A SER53 SER53A LYS54 ASP54A LYS55 VAL55A GLU56 SER56A GLN57 ASN57A ARG57B ALA58 VAL58A LYS59 LYS59A ASN60 ALA60A ALA61 HIS61A MET62 LEU62A TRP63 ASN63A ILE64 ALA64A ASP65 SER65A CYS66 ARG66A GLY67 ILE67A ILE68 PRO68A HIS69 PHE69A ALA70 ARG70A ARG71 VAL71A GLU72 LEU72A TRP73 VAL73A ILE74 GLU74A SER75 ASN75A PRO76 VAL76A ALA77 GLU77A PHE78 ASP78A CYS79 LEU79A LEU80 ILE80A TRP81 ARG81A PHE82 GLN82A VAL83 GLN83A GLY84 THR84A SER85 SER85A VAL86 ASN86A THR87 ASP87A TYR88 THR88A TYR89 ILE89A TYR90 SER90A GLY91 PRO91A LYS92 ARG92A GLU93 LYS94 MET95 HIS96 THR97 ASN98 LEU99 LEU100 LYS101 HIS102 MET103 ASP104 PHE105 TYR106 ILE107 MET108 PRO109 VAL110 VAL111 ASN112 VAL113 ASP114 GLY115 TYR116 ASP117 TYR118 THR119 TRP120 LYS121 LYS122 ASP123 ARG124 MET125 TRP126 ARG127 LYS128 ASN129 ARG130 SER131 LEU132 HIS133 GLU134 LYS135 ASN136 ALA137 CYS138 VAL139 GLY140 THR141 ASP142 LEU143 ASN144 ARG145 ASN146 PHE147 ALA148 SER149 LYS150 HIS150B TRP151 CYS152 GLY153 GLU154 GLY155 ALA156 SER157 SER158 SER159 SER160 CYS161 SER162 GLU163 ILE164 TYR165 CYS166 GLY167 THR168 TYR169 PRO170 GLU171 SER172 GLU173 PRO174 GLU175 VAL176 LYS177 ALA178 VAL179 ALA180 ASP181 PHE182 LEU183 ARG184 ARG185 ASN186 ILE187 LYS188 HIS188B ILE189 LYS190 ALA191 TYR192 ILE193 SER194 MET195 HIS196 SER197 TYR198 SER199 GLN200 LYS201 ILE202 VAL203 PHE204 PRO205 TYR206 SER207 TYR208 SER209 ARG210 SER211 ARG212 SER213 LYS214 ASP215 HIS216 GLU217 GLU218 LEU219 SER220 LEU221 VAL222 ALA223 ARG224 GLU225 ALA226 VAL227 PHE228 ALA229 MET230 GLU231 ASN232 ILE233 HIS234 ARG235 ASN235B ILE236 ARG237 TYR238 THR239 HIS240 GLY241 SER242 GLY243 SER244 GLU245 SER246 LEU247 TYR248 LEU249 ALA250 PRO251 GLY252 GLY253 SER254 ASP255 ASP256 TRP257 ILE258 TYR259 ASP260 LEU261 GLY262 ILE263 LYS264 TYR265 SER266 PHE267 THR268 PHE269 GLU270 LEU271 ARG272 ASP273 LYS274 GLY275 LYS276 TYR277 GLY278 PHE279 LEU280 LEU281 PRO282 GLU283 SER284 TYR285 ILE286 ARG287 PRO288 THR289 CYS290 SER291 GLU292 ALA293 LEU294 VAL295 ALA296 VAL297 ALA298 LYS299 ILE300 ALA301 SER302 HIS303 VAL304 VAL305 LYS306 ASN307 VAL308
Unit 3 GLN2A ARG3A ALA4 GLY4A SER5 GLN5A SER6 VAL6A SER7 TYR8 TYR9 GLU10 GLN11 TYR12 ARG12A HIS13 THR13A SER14 SER14A LEU15 ARG15A ASN16 GLN16A GLU17 VAL17A ILE18 GLN18A TYR19 ILE19A SER20 LEU20A TRP21 GLN21A ILE22 ASN22A GLU23 VAL23A VAL24 THR24A MET25 THR25A THR26 THR26A GLU27 TYR27A ARG28 LYS28A TYR29 ILE29A PRO30 VAL30A ASP31 LEU31A MET32 TRP32A VAL33 GLN33A GLU34 PRO34A LYS35 VAL35A ILE36 ALA36A HIS37 ALA37A ILE38 GLU38A GLY39 TYR39A SER40 SER41 TYR42 GLU43 LYS44 TYR45 GLU45A PRO46 VAL46A LEU47 HIS47A TYR48 PHE48A VAL49 PHE49A LEU50 VAL50A LYS51 ASN51A VAL52 ALA52A SER53 SER53A LYS54 ASP54A LYS55 VAL55A GLU56 SER56A ASN57A VAL58A LYS59 LYS59A ASN60 ALA60A ALA61 HIS61A MET62 LEU62A TRP63 ASN63A ILE64 ALA64A ASP65 SER65A CYS66 GLY67 ILE67A ILE68 PRO68A HIS69 PHE69A ALA70 ARG70A ARG71 VAL71A GLU72 LEU72A TRP73 VAL73A ILE74 GLU74A SER75 ASN75A PRO76 VAL76A ALA77 GLU77A PHE78 ASP78A CYS79 LEU79A LEU80 ILE80A TRP81 ARG81A PHE82 GLN82A VAL83 GLN83A GLY84 THR84A SER85 SER85A VAL86 THR87 TYR88 TYR89 TYR90 SER90A GLY91 PRO91A LYS92 ARG92A GLU93 LYS94 MET95 HIS96 THR97 ASN98 LEU99 LEU100 LYS101 HIS102 MET103 ASP104 PHE105 TYR106 ILE107 MET108 PRO109 VAL110 VAL111 ASN112 VAL113 ASP114 GLY115 TYR116 ASP117 TYR118 THR119 TRP120 LYS121 LYS122 ASP123 ARG124 MET125 TRP126 ARG127 LYS128 ASN129 ARG130 SER131 LEU132 HIS133 GLU134 LYS135 ASN136 ALA137 CYS138 VAL139 GLY140 THR141 ASP142 LEU143 ASN144 ARG145 ASN146 PHE147 ALA148 SER149 LYS150 HIS150B TRP151 CYS152 GLY153 GLU154 GLY155 ALA156 SER157 SER158 SER159 SER160 CYS161 SER162 GLU163 ILE164 TYR165 CYS166 GLY167 THR168 TYR169 PRO170 GLU171 SER172 GLU173 PRO174 GLU175 VAL176 LYS177 ALA178 VAL179 ALA180 ASP181 PHE182 LEU183 ARG184 ARG185 ASN186 ILE187 LYS188 HIS188B ILE189 LYS190 ALA191 TYR192 ILE193 SER194 MET195 HIS196 SER197 TYR198 SER199 GLN200 LYS201 ILE202 VAL203 PHE204 PRO205 TYR206 SER207 TYR208 SER209 ARG210 SER211 ARG212 SER213 LYS214 ASP215 HIS216 GLU217 GLU218 LEU219 SER220 LEU221 VAL222 ALA223 ARG224 GLU225 ALA226 VAL227 PHE228 ALA229 MET230 GLU231 ASN232 ILE233 HIS234 ARG235 ASN235B THR239 HIS240 GLY241 SER242 GLY243 SER244 GLU245 SER246 LEU247 TYR248 LEU249 ALA250 PRO251 GLY252 GLY253 SER254 ASP255 ASP256 TRP257 ILE258 TYR259 ASP260 LEU261 GLY262 ILE263 LYS264 TYR265 SER266 PHE267 THR268 PHE269 GLU270 LEU271 ARG272 ASP273 LYS274 GLY275 LYS276 TYR277 GLY278 PHE279 LEU280 LEU281 PRO282 GLU283 SER284 TYR285 ILE286 ARG287 PRO288 THR289 CYS290 SER291 GLU292 ALA293 LEU294 VAL295 ALA296 VAL297 ALA298 LYS299 ILE300 ALA301 SER302 HIS303 VAL304 VAL305 LYS306 ASN307 VAL308
Ligands
Unit 4 NAG1 NDG2
Unit 5 NAG1 FUL2
Unit 6 NAG1 NAG2
Unit 7 NAG1 NAG2 FUL3
Unit 8 NAG1 NAG2 BMA3
Unit 9 NAG1 NDG2
Unit 10 NAG1 NAG2
Unit 11 ZN318 SO4319 SO4320 SO4321 SO4322 SO4323 SO4324 SO4325 SO4326 SO4327 MLI328
Unit 12 NAG316 ZN317 SO4318 SO4319 SO4320 SO4321 SO4322 SO4323 SO4324 SO4325 SO4326 SO4327 SO4328 MLI329
Unit 13 NAG309 ZN310 SO4311 SO4312 MLI313
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany