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3DGV
Asym. Unit
Info
Asym.Unit (231 KB)
Biol.Unit 1 (160 KB)
Biol.Unit 2 (83 KB)
Biol.Unit 3 (82 KB)
Biol.Unit 4 (68 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THROMBIN ACTIVATABLE FIBRINOLYSIS INHIBITOR (TAFI)
Authors
:
K. Anand, I. Pallares, Z. Valnickova, T. Christensen, H. Schreuder, J.
Date
:
16 Jun 08 (Deposition) - 22 Jul 08 (Release) - 08 Feb 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B (1x)
Biol. Unit 2: A (1x)
Biol. Unit 3: B (1x)
Biol. Unit 4: C (1x)
Keywords
:
Blood Coagulation, Fibrinolysis, Carboxypeptidase, Protein Stability, Glycoprotein, Hydrolase, Metal-Binding, Metalloprotease, Protease, Secreted, Zymogen
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. Anand, I. Pallares, Z. Valnickova, T. Christensen, J. Vendrell, K. U. Wendt, H. A. Schreuder, J. J. Enghild, F. X. Avil S
The Crystal Structure Of Tafi Provides The Structural Basis For The Intrinsic Activity Of The Proenzyme And Short Half-Life Of Tafia
To Be Published
[
close entry info
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Hetero Components
(7, 46)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
2a: BETA-L-FUCOSE (FULa)
2b: BETA-L-FUCOSE (FULb)
3a: MALONATE ION (MLIa)
3b: MALONATE ION (MLIb)
3c: MALONATE ION (MLIc)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4c: N-ACETYL-D-GLUCOSAMINE (NAGc)
4d: N-ACETYL-D-GLUCOSAMINE (NAGd)
4e: N-ACETYL-D-GLUCOSAMINE (NAGe)
4f: N-ACETYL-D-GLUCOSAMINE (NAGf)
4g: N-ACETYL-D-GLUCOSAMINE (NAGg)
4h: N-ACETYL-D-GLUCOSAMINE (NAGh)
4i: N-ACETYL-D-GLUCOSAMINE (NAGi)
4j: N-ACETYL-D-GLUCOSAMINE (NAGj)
4k: N-ACETYL-D-GLUCOSAMINE (NAGk)
5a: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGa)
5b: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGb)
5c: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGc)
5d: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGd)
6a: SULFATE ION (SO4a)
6b: SULFATE ION (SO4b)
6c: SULFATE ION (SO4c)
6d: SULFATE ION (SO4d)
6e: SULFATE ION (SO4e)
6f: SULFATE ION (SO4f)
6g: SULFATE ION (SO4g)
6h: SULFATE ION (SO4h)
6i: SULFATE ION (SO4i)
6j: SULFATE ION (SO4j)
6k: SULFATE ION (SO4k)
6l: SULFATE ION (SO4l)
6m: SULFATE ION (SO4m)
6n: SULFATE ION (SO4n)
6o: SULFATE ION (SO4o)
6p: SULFATE ION (SO4p)
6q: SULFATE ION (SO4q)
6r: SULFATE ION (SO4r)
6s: SULFATE ION (SO4s)
6t: SULFATE ION (SO4t)
6u: SULFATE ION (SO4u)
6v: SULFATE ION (SO4v)
7a: ZINC ION (ZNa)
7b: ZINC ION (ZNb)
7c: ZINC ION (ZNc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
1
Ligand/Ion
BETA-D-MANNOSE
2
FUL
2
Ligand/Ion
BETA-L-FUCOSE
3
MLI
3
Ligand/Ion
MALONATE ION
4
NAG
11
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
5
NDG
4
Ligand/Ion
2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
6
SO4
22
Ligand/Ion
SULFATE ION
7
ZN
3
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(41, 41)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC3 (SOFTWARE)
12: BC4 (SOFTWARE)
13: BC5 (SOFTWARE)
14: BC6 (SOFTWARE)
15: BC7 (SOFTWARE)
16: BC8 (SOFTWARE)
17: BC9 (SOFTWARE)
18: CC1 (SOFTWARE)
19: CC2 (SOFTWARE)
20: CC3 (SOFTWARE)
21: CC4 (SOFTWARE)
22: CC5 (SOFTWARE)
23: CC6 (SOFTWARE)
24: CC7 (SOFTWARE)
25: CC8 (SOFTWARE)
26: CC9 (SOFTWARE)
27: DC1 (SOFTWARE)
28: DC2 (SOFTWARE)
29: DC3 (SOFTWARE)
30: DC4 (SOFTWARE)
31: DC5 (SOFTWARE)
32: DC6 (SOFTWARE)
33: DC7 (SOFTWARE)
34: DC8 (SOFTWARE)
35: DC9 (SOFTWARE)
36: EC1 (SOFTWARE)
37: EC2 (SOFTWARE)
38: EC3 (SOFTWARE)
39: EC4 (SOFTWARE)
40: EC5 (SOFTWARE)
41: EC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:51A , SER A:53A
BINDING SITE FOR RESIDUE NAG A 309
02
AC2
SOFTWARE
ARG A:3A
BINDING SITE FOR RESIDUE NDG A 310
03
AC3
SOFTWARE
ASN A:63A
BINDING SITE FOR RESIDUE NAG A 311
04
AC4
SOFTWARE
SER A:85A , ASN A:86A , ILE A:89A
BINDING SITE FOR RESIDUE NAG A 313
05
AC5
SOFTWARE
ARG B:3A , LYS B:28A , ASN B:51A , SER B:53A
BINDING SITE FOR RESIDUE NAG B 309
06
AC6
SOFTWARE
ARG B:3A
BINDING SITE FOR RESIDUE NAG B 310
07
AC7
SOFTWARE
ASN B:63A , ALA B:64A
BINDING SITE FOR RESIDUE NAG B 312
08
AC8
SOFTWARE
SER B:85A , ASN B:86A , ILE B:89A
BINDING SITE FOR RESIDUE NAG B 314
09
AC9
SOFTWARE
ARG B:81A , GLN B:82A
BINDING SITE FOR RESIDUE NAG B 315
10
BC1
SOFTWARE
GLN A:18A , ILE A:19A , ASN A:22A
BINDING SITE FOR RESIDUE NDG A 315
11
BC3
SOFTWARE
ASN A:22A , THR A:26A
BINDING SITE FOR RESIDUE FUL A 317
12
BC4
SOFTWARE
ASN B:22A
BINDING SITE FOR RESIDUE NAG B 316
13
BC5
SOFTWARE
GLN C:2A , ARG C:3A , ASN C:51A , SER C:53A
BINDING SITE FOR RESIDUE NDG C 309
14
BC6
SOFTWARE
HIS A:69 , GLU A:72 , HIS A:196
BINDING SITE FOR RESIDUE ZN A 318
15
BC7
SOFTWARE
HIS B:69 , GLU B:72 , HIS B:196
BINDING SITE FOR RESIDUE ZN B 317
16
BC8
SOFTWARE
HIS C:69 , GLU C:72 , HIS C:196
BINDING SITE FOR RESIDUE ZN C 310
17
BC9
SOFTWARE
LYS A:122 , ASN B:136 , ALA B:137 , SER B:159 , SER B:160
BINDING SITE FOR RESIDUE SO4 B 318
18
CC1
SOFTWARE
ALA A:137 , SER A:159 , SER A:160 , LYS B:122
BINDING SITE FOR RESIDUE SO4 A 319
19
CC2
SOFTWARE
LYS A:150 , HIS A:150B , SER A:209 , SER A:211 , LYS A:214
BINDING SITE FOR RESIDUE SO4 A 320
20
CC3
SOFTWARE
ARG A:237 , TYR B:44A , GLU B:45A
BINDING SITE FOR RESIDUE SO4 B 319
21
CC4
SOFTWARE
HIS B:133 , GLU B:134
BINDING SITE FOR RESIDUE SO4 B 320
22
CC5
SOFTWARE
TYR A:44A , GLU A:45A
BINDING SITE FOR RESIDUE SO4 A 321
23
CC6
SOFTWARE
HIS A:216 , SER A:220 , ARG A:224
BINDING SITE FOR RESIDUE SO4 A 322
24
CC7
SOFTWARE
HIS A:133 , GLU A:134
BINDING SITE FOR RESIDUE SO4 A 323
25
CC8
SOFTWARE
THR B:13A , SER B:14A , LYS B:42A
BINDING SITE FOR RESIDUE SO4 B 321
26
CC9
SOFTWARE
THR A:13A , ARG A:15A , GLN A:16A , ARG A:66A
BINDING SITE FOR RESIDUE SO4 A 324
27
DC1
SOFTWARE
HIS C:133 , GLU C:134
BINDING SITE FOR RESIDUE SO4 C 311
28
DC2
SOFTWARE
HIS B:150B , TYR B:208 , SER B:209
BINDING SITE FOR RESIDUE SO4 B 322
29
DC3
SOFTWARE
LYS A:276 , ILE B:233 , HIS B:234 , ARG B:235 , ASN B:235B
BINDING SITE FOR RESIDUE SO4 B 323
30
DC4
SOFTWARE
HIS B:216 , SER B:220 , ARG B:224 , GLU B:245
BINDING SITE FOR RESIDUE SO4 B 324
31
DC5
SOFTWARE
THR A:13A , SER A:14A , LYS A:42A
BINDING SITE FOR RESIDUE SO4 A 325
32
DC6
SOFTWARE
GLY A:39 , SER A:40
BINDING SITE FOR RESIDUE SO4 A 326
33
DC7
SOFTWARE
ARG A:237 , ARG B:237 , LYS B:274
BINDING SITE FOR RESIDUE SO4 B 325
34
DC8
SOFTWARE
LYS A:274 , ARG B:237
BINDING SITE FOR RESIDUE SO4 B 326
35
DC9
SOFTWARE
THR B:13A , ARG B:15A , GLN B:16A , ARG B:66A
BINDING SITE FOR RESIDUE SO4 B 327
36
EC1
SOFTWARE
ILE A:233 , HIS A:234 , ARG A:235 , LYS B:276
BINDING SITE FOR RESIDUE SO4 A 327
37
EC2
SOFTWARE
LYS C:122 , ASN C:136 , ALA C:137 , SER C:159 , SER C:160
BINDING SITE FOR RESIDUE SO4 C 312
38
EC3
SOFTWARE
LYS A:306 , ARG B:12A , ARG B:66A
BINDING SITE FOR RESIDUE SO4 B 328
39
EC4
SOFTWARE
HIS A:69 , GLU A:72 , ARG A:127 , ARG A:145 , GLU A:270
BINDING SITE FOR RESIDUE MLI A 328
40
EC5
SOFTWARE
HIS B:69 , GLU B:72 , ARG B:127 , ASN B:144 , ARG B:145 , HIS B:196 , GLU B:270
BINDING SITE FOR RESIDUE MLI B 329
41
EC6
SOFTWARE
HIS C:69 , ARG C:127 , ASN C:144 , ARG C:145 , TYR C:248
BINDING SITE FOR RESIDUE MLI C 313
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
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]
Exons
(0, 0)
Info
All Exons
View:
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
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Label:
Sorry, no Info available
[
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CATH Domains
(1, 3)
Info
all CATH domains
1a: CATH_3dgvC02 (C:4-308)
1b: CATH_3dgvA02 (A:4-308)
1c: CATH_3dgvB02 (B:4-308)
View:
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Classes
(
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Homologous Superfamilies
(
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Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Aminopeptidase
(284)
Homologous Superfamily
:
Zn peptidases
(137)
Bovine,cow,domestic cattle,domestic cow (Bos taurus)
(1)
1a
3dgvC02
C:4-308
1b
3dgvA02
A:4-308
1c
3dgvB02
B:4-308
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
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]
Atom Selection
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)
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Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
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