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3DGV
Biol. Unit 3
Info
Asym.Unit (231 KB)
Biol.Unit 1 (160 KB)
Biol.Unit 2 (83 KB)
Biol.Unit 3 (82 KB)
Biol.Unit 4 (68 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THROMBIN ACTIVATABLE FIBRINOLYSIS INHIBITOR (TAFI)
Authors
:
K. Anand, I. Pallares, Z. Valnickova, T. Christensen, H. Schreuder, J.
Date
:
16 Jun 08 (Deposition) - 22 Jul 08 (Release) - 08 Feb 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B (1x)
Biol. Unit 2: A (1x)
Biol. Unit 3: B (1x)
Biol. Unit 4: C (1x)
Keywords
:
Blood Coagulation, Fibrinolysis, Carboxypeptidase, Protein Stability, Glycoprotein, Hydrolase, Metal-Binding, Metalloprotease, Protease, Secreted, Zymogen
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. Anand, I. Pallares, Z. Valnickova, T. Christensen, J. Vendrell, K. U. Wendt, H. A. Schreuder, J. J. Enghild, F. X. Avil S
The Crystal Structure Of Tafi Provides The Structural Basis For The Intrinsic Activity Of The Proenzyme And Short Half-Life Of Tafia
To Be Published
[
close entry info
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Hetero Components
(5, 20)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
2a: BETA-L-FUCOSE (FULa)
2b: BETA-L-FUCOSE (FULb)
3a: MALONATE ION (MLIa)
3b: MALONATE ION (MLIb)
3c: MALONATE ION (MLIc)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4c: N-ACETYL-D-GLUCOSAMINE (NAGc)
4d: N-ACETYL-D-GLUCOSAMINE (NAGd)
4e: N-ACETYL-D-GLUCOSAMINE (NAGe)
4f: N-ACETYL-D-GLUCOSAMINE (NAGf)
4g: N-ACETYL-D-GLUCOSAMINE (NAGg)
4h: N-ACETYL-D-GLUCOSAMINE (NAGh)
4i: N-ACETYL-D-GLUCOSAMINE (NAGi)
4j: N-ACETYL-D-GLUCOSAMINE (NAGj)
4k: N-ACETYL-D-GLUCOSAMINE (NAGk)
5a: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGa)
5b: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGb)
5c: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGc)
5d: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGd)
6a: SULFATE ION (SO4a)
6b: SULFATE ION (SO4b)
6c: SULFATE ION (SO4c)
6d: SULFATE ION (SO4d)
6e: SULFATE ION (SO4e)
6f: SULFATE ION (SO4f)
6g: SULFATE ION (SO4g)
6h: SULFATE ION (SO4h)
6i: SULFATE ION (SO4i)
6j: SULFATE ION (SO4j)
6k: SULFATE ION (SO4k)
6l: SULFATE ION (SO4l)
6m: SULFATE ION (SO4m)
6n: SULFATE ION (SO4n)
6o: SULFATE ION (SO4o)
6p: SULFATE ION (SO4p)
6q: SULFATE ION (SO4q)
6r: SULFATE ION (SO4r)
6s: SULFATE ION (SO4s)
6t: SULFATE ION (SO4t)
6u: SULFATE ION (SO4u)
6v: SULFATE ION (SO4v)
7a: ZINC ION (ZNa)
7b: ZINC ION (ZNb)
7c: ZINC ION (ZNc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
1
Ligand/Ion
BETA-D-MANNOSE
2
FUL
-1
Ligand/Ion
BETA-L-FUCOSE
3
MLI
1
Ligand/Ion
MALONATE ION
4
NAG
6
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
5
NDG
1
Ligand/Ion
2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
6
SO4
11
Ligand/Ion
SULFATE ION
7
ZN
-1
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(21, 21)
Info
All Sites
01: AC5 (SOFTWARE)
02: AC6 (SOFTWARE)
03: AC7 (SOFTWARE)
04: AC8 (SOFTWARE)
05: AC9 (SOFTWARE)
06: BC4 (SOFTWARE)
07: BC7 (SOFTWARE)
08: BC9 (SOFTWARE)
09: CC1 (SOFTWARE)
10: CC3 (SOFTWARE)
11: CC4 (SOFTWARE)
12: CC8 (SOFTWARE)
13: DC2 (SOFTWARE)
14: DC3 (SOFTWARE)
15: DC4 (SOFTWARE)
16: DC7 (SOFTWARE)
17: DC8 (SOFTWARE)
18: DC9 (SOFTWARE)
19: EC1 (SOFTWARE)
20: EC3 (SOFTWARE)
21: EC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC5
SOFTWARE
ARG B:3A , LYS B:28A , ASN B:51A , SER B:53A
BINDING SITE FOR RESIDUE NAG B 309
02
AC6
SOFTWARE
ARG B:3A
BINDING SITE FOR RESIDUE NAG B 310
03
AC7
SOFTWARE
ASN B:63A , ALA B:64A
BINDING SITE FOR RESIDUE NAG B 312
04
AC8
SOFTWARE
SER B:85A , ASN B:86A , ILE B:89A
BINDING SITE FOR RESIDUE NAG B 314
05
AC9
SOFTWARE
ARG B:81A , GLN B:82A
BINDING SITE FOR RESIDUE NAG B 315
06
BC4
SOFTWARE
ASN B:22A
BINDING SITE FOR RESIDUE NAG B 316
07
BC7
SOFTWARE
HIS B:69 , GLU B:72 , HIS B:196
BINDING SITE FOR RESIDUE ZN B 317
08
BC9
SOFTWARE
LYS A:122 , ASN B:136 , ALA B:137 , SER B:159 , SER B:160
BINDING SITE FOR RESIDUE SO4 B 318
09
CC1
SOFTWARE
ALA A:137 , SER A:159 , SER A:160 , LYS B:122
BINDING SITE FOR RESIDUE SO4 A 319
10
CC3
SOFTWARE
ARG A:237 , TYR B:44A , GLU B:45A
BINDING SITE FOR RESIDUE SO4 B 319
11
CC4
SOFTWARE
HIS B:133 , GLU B:134
BINDING SITE FOR RESIDUE SO4 B 320
12
CC8
SOFTWARE
THR B:13A , SER B:14A , LYS B:42A
BINDING SITE FOR RESIDUE SO4 B 321
13
DC2
SOFTWARE
HIS B:150B , TYR B:208 , SER B:209
BINDING SITE FOR RESIDUE SO4 B 322
14
DC3
SOFTWARE
LYS A:276 , ILE B:233 , HIS B:234 , ARG B:235 , ASN B:235B
BINDING SITE FOR RESIDUE SO4 B 323
15
DC4
SOFTWARE
HIS B:216 , SER B:220 , ARG B:224 , GLU B:245
BINDING SITE FOR RESIDUE SO4 B 324
16
DC7
SOFTWARE
ARG A:237 , ARG B:237 , LYS B:274
BINDING SITE FOR RESIDUE SO4 B 325
17
DC8
SOFTWARE
LYS A:274 , ARG B:237
BINDING SITE FOR RESIDUE SO4 B 326
18
DC9
SOFTWARE
THR B:13A , ARG B:15A , GLN B:16A , ARG B:66A
BINDING SITE FOR RESIDUE SO4 B 327
19
EC1
SOFTWARE
ILE A:233 , HIS A:234 , ARG A:235 , LYS B:276
BINDING SITE FOR RESIDUE SO4 A 327
20
EC3
SOFTWARE
LYS A:306 , ARG B:12A , ARG B:66A
BINDING SITE FOR RESIDUE SO4 B 328
21
EC5
SOFTWARE
HIS B:69 , GLU B:72 , ARG B:127 , ASN B:144 , ARG B:145 , HIS B:196 , GLU B:270
BINDING SITE FOR RESIDUE MLI B 329
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
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Sorry, no Info available
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CATH Domains
(1, 3)
Info
all CATH domains
1a: CATH_3dgvC02 (C:4-308)
1b: CATH_3dgvA02 (A:4-308)
1c: CATH_3dgvB02 (B:4-308)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Aminopeptidase
(284)
Homologous Superfamily
:
Zn peptidases
(137)
Bovine,cow,domestic cattle,domestic cow (Bos taurus)
(1)
1a
3dgvC02
C:4-308
1b
3dgvA02
A:4-308
1c
3dgvB02
B:4-308
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
[
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Atom Selection
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Protein
Nucleic
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All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain B
Asymmetric Unit 1
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Asym.Unit (231 KB)
Header - Asym.Unit
Biol.Unit 1 (160 KB)
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Biol.Unit 3 (82 KB)
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