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(-) Description

Authors :  T. Karlberg, A. G. Thorsell, C. H. Arrowsmith, C. Bountra, A. M. Edwards T. Ekblad, J. Weigelt, H. Schuler, Structural Genomics Consortium
Date :  10 Jan 12  (Deposition) - 13 Mar 13  (Release) - 20 Mar 13  (Revision)
Resolution :  2.80
Chains :  Asym./Biol. Unit :  A
Keywords :  Transferase, Adp-Ribose, Parp14, Macro, Bal2, Artd8, Structural Genomics, Structural Genomics Consortium, Sgc (Keyword Search: [Gene Ontology, PubMed, Web (Google))
Reference :  A. H. Forst, T. Karlberg, N. Herzog, A. G. Thorsell, A. Gross, K. L. Feijs, P. Verheugd, P. Kursula, B. Nijmeijer, E. Kremmer, H. Kleine, A. G. Ladurner, H. Schuler, B. Luscher
Recognition Of Mono-Adp-Ribosylated Artd10 Substrates By Artd8 Macrodomains.
Structure V. 21 462 2013
PubMed-ID: 23473667  |  Reference-DOI: 10.1016/J.STR.2012.12.019

(-) Compounds

    EC Number2.4.2.30
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPNIC-BSA4
    Expression System StrainBL21(DE3)PRARE
    Expression System Taxid562
    Expression System Vector TypePLASMID
    FragmentMACRO DOMAINS 1 AND 2 (UNP RESIDUES 784-1196)
    GeneBAL2, KIAA1268, PARP14
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606

 Structural Features

(-) Chains, Units

Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
1AC1SOFTWAREGLY A:1022 , VAL A:1023 , GLN A:1024 , SER A:1034 , PRO A:1036 , GLY A:1044 , PRO A:1045 , LEU A:1046 , SER A:1049 , ALA A:1131 , ILE A:1132 , GLY A:1133 , THR A:1134 , GLY A:1135 , ASN A:1136 , LEU A:1137 , HIS A:1172 , ASP A:1175 , ASN A:1178BINDING SITE FOR RESIDUE AR6 A 1201

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3VFQ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3VFQ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3VFQ)

(-) PROSITE Motifs  (1, 2)

Asymmetric/Biological Unit (1, 2)
1MACROPS51154 Macro domain profile.PAR14_HUMAN791-978

(-) Exons   (0, 0)

(no "Exon" information available for 3VFQ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:375
 aligned with PAR14_HUMAN | Q460N5 from UniProtKB/Swiss-Prot  Length:1801

    Alignment length:401
                                   800       810       820       830       840       850       860       870       880       890       900       910       920       930       940       950       960       970       980       990      1000      1010      1020      1030      1040      1050      1060      1070      1080      1090      1100      1110      1120      1130      1140      1150      1160      1170      1180      1190 
               SCOP domains d3vfqa1 A:791-974 automated matches                                                                                                                                                     ----------------------------------------d3vfqa2 A:1015-1191 automated matches                                                                                                                                             SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeee..eeeeeee.........eeeeee........hhhhhhhhhhhhhhhhhhhhhhhhh......eeeeee.......eeeeee.......hhhhhhhhhhhhhhhhhhhhhhh...eeee..........hhhhhhhhhhhhhhhhhhh........eeeeee.hhhhhhhhhhhhhhhh--------------------------..eee.....eeeee..hhhhh...eeeee.........hhhhhhhhhhhhhhhhhhhhhhh.........eeeee.......eeeee........hhhhhhhhhhhhhhhhhhhhhh...eeeee.........hhhhhhhhhhhhhhhhhhhh......eeeee....hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE MACRO  PDB: A:791-978 UniProt: 791-978                                                                                                                                                      ------------------------MACRO  PDB: A:1005-1190 UniProt: 1003-1190                                                                                                                                                  - PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                                   800       810       820       830       840       850       860       870       880       890       900       910       920       930       940       950       960       970       | -         -         -    | 1010      1020      1030      1040      1050      1060      1070      1080      1090      1100      1110      1120      1130      1140      1150      1160      1170      1180      1190 
                                                                                                                                                                                                                     978                       1005                                                                                                                                                                                          

   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3VFQ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3VFQ)

(-) Gene Ontology  (8, 8)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (PAR14_HUMAN | Q460N5)
molecular function
    GO:0003950    NAD+ ADP-ribosyltransferase activity    Catalysis of the reaction: NAD+ + (ADP-D-ribosyl)(n)-acceptor = nicotinamide + (ADP-D-ribosyl)(n+1)-acceptor.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
    GO:0016757    transferase activity, transferring glycosyl groups    Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor).
biological process
    GO:0006355    regulation of transcription, DNA-templated    Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.


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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

        PAR14_HUMAN | Q460N53goy 3q6z 3q71 3se2 3smi 3smj 4abk 4abl 4d86 4f1l 4f1q 4py4 5lxp 5lyh 5nqe 5v7t 5v7w

(-) Related Entries Specified in the PDB File