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(-) Description

Title :  CRYSTAL STRUCTURE OF THE BIR DOMAIN OF MLIAP BOUND TO GDC0152
 
Authors :  B. Maurer, S. G. Hymowitz
Date :  30 Nov 11  (Deposition) - 22 Feb 12  (Release) - 23 May 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.71
Chains :  Asym. Unit :  A,B,Y,Z
Biol. Unit 1:  A,Z  (1x)
Biol. Unit 2:  B,Y  (1x)
Keywords :  Apoptosis Inhibitor, Bir Domain (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  J. A. Flygare, M. Beresini, N. Budha, H. Chan, I. T. Chan, S. Cheeti, F. Cohen, K. Deshayes, K. Doerner, S. G. Eckhardt, L. O. Elliott, B. Feng, M. C. Franklin, S. F. Reisner, L. Gazzard, J. Halladay, S. G. Hymowitz, H. La, P. Lorusso, B. Maurer, L. Murray, E. Plise, C. Quan, J. P. Stephan, S. G. Young, J. Tom, V. Tsui, J. Um, E. Varfolomeev, D. Vucic, A. J. Wagner, H. J. Wallweber, L. Wang, J. Ware, Z. Wen, H. Wong, J. M. Wong, M. Wong, S. Wong, R. Yu, K. Zobel, W. J. Fairbrother
Discovery Of A Potent Small-Molecule Antagonist Of Inhibito Of Apoptosis (Iap) Proteins And Clinical Candidate For The Treatment Of Cancer (Gdc-0152).
J. Med. Chem. V. 55 4101 2012
PubMed-ID: 22413863  |  Reference-DOI: 10.1021/JM300060K

(-) Compounds

Molecule 1 - BACULOVIRAL IAP REPEAT-CONTAINING PROTEIN 7, BACULOVIRAL IAP REPEAT-CONTAINING PROTEIN 4
    ChainsA, B
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPET15B
    Expression System StrainBL21(DE3)
    Expression System Taxid562
    Expression System Vector TypePLASMID
    FragmentBIR DOMAIN 63-179
    GeneBIRC7, KIAP, LIVIN, MLIAP, RNF50, UNQ5800/PRO19607/PRO21344, API3, BIRC4, IAP3, XIAP
    MutationYES
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymKIDNEY INHIBITOR OF APOPTOSIS PROTEIN, KIAP, LIVIN, MELANOMA INHIBITOR OF APOPTOSIS PROTEIN, ML-IAP, RING FINGER PROTEIN 50, E3 UBIQUITIN-PROTEIN LIGASE XIAP, IAP-LIKE PROTEIN, ILP, HILP, INHIBITOR OF APOPTOSIS PROTEIN 3, IAP-3, HIAP-3, HIAP3, X-LINKED INHIBITOR OF APOPTOSIS PROTEIN, X-LINKED IAP
 
Molecule 2 - GDC-0152
    ChainsZ, Y
    EngineeredYES
    Other DetailsSYNTHETIC MIMETIC
    SyntheticYES

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit ABYZ
Biological Unit 1 (1x)A  Z
Biological Unit 2 (1x) BY 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 10)

Asymmetric Unit (5, 10)
No.NameCountTypeFull Name
10DQ2Mod. Amino Acid4-PHENYL-1,2,3-THIADIAZOL-5-AMINE
2CHG2Mod. Amino AcidCYCLOHEXYL-GLYCINE
3MAA2Mod. Amino AcidN-METHYL-L-ALANINE
4SO42Ligand/IonSULFATE ION
5ZN2Ligand/IonZINC ION
Biological Unit 1 (4, 4)
No.NameCountTypeFull Name
10DQ1Mod. Amino Acid4-PHENYL-1,2,3-THIADIAZOL-5-AMINE
2CHG1Mod. Amino AcidCYCLOHEXYL-GLYCINE
3MAA1Mod. Amino AcidN-METHYL-L-ALANINE
4SO41Ligand/IonSULFATE ION
5ZN-1Ligand/IonZINC ION
Biological Unit 2 (4, 4)
No.NameCountTypeFull Name
10DQ1Mod. Amino Acid4-PHENYL-1,2,3-THIADIAZOL-5-AMINE
2CHG1Mod. Amino AcidCYCLOHEXYL-GLYCINE
3MAA1Mod. Amino AcidN-METHYL-L-ALANINE
4SO41Ligand/IonSULFATE ION
5ZN-1Ligand/IonZINC ION

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECYS A:124 , CYS A:127 , HIS A:144 , CYS A:151BINDING SITE FOR RESIDUE ZN A 1001
2AC2SOFTWAREARG A:123 , HOH A:210 , ARG B:136 , HOH B:196BINDING SITE FOR RESIDUE SO4 A 205
3AC3SOFTWARECYS B:124 , CYS B:127 , HIS B:144 , CYS B:151BINDING SITE FOR RESIDUE ZN B 1001
4AC4SOFTWAREGLY B:117 , HIS B:118 , GLN B:119 , LYS B:121 , HOH B:175 , HOH B:180 , HOH B:201 , HOH B:203BINDING SITE FOR RESIDUE SO4 B 206
5AC5SOFTWAREGLU A:106 , LEU A:107 , LYS B:121 , VAL B:122 , ARG B:123 , GLY B:130 , LEU B:131 , GLN B:132 , SER B:133 , TRP B:134 , ASP B:138 , GLU B:143 , TRP B:147 , HOH B:202 , HOH Y:123 , HOH Y:139BINDING SITE FOR CHAIN Y OF GDC-0152
6AC6SOFTWAREVAL A:122 , ARG A:123 , GLY A:130 , LEU A:131 , GLN A:132 , SER A:133 , TRP A:134 , ASP A:138 , GLU A:143 , TRP A:147 , ARG B:136 , HOH Z:160BINDING SITE FOR CHAIN Z OF GDC-0152

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3UW5)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3UW5)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3UW5)

(-) PROSITE Motifs  (2, 12)

Asymmetric Unit (2, 12)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1BIR_REPEAT_1PS01282 BIR repeat.XIAP_HUMAN26-93
163-230
 
265-330
 
  4-
A:87-105
B:87-105
A:106-154
B:106-154
BIRC7_HUMAN87-154
 
  2A:87-154
B:87-154
2BIR_REPEAT_2PS50143 BIR repeat profile.XIAP_HUMAN29-94
166-231
 
268-331
 
  4-
A:90-105
B:90-105
A:106-155
B:106-155
BIRC7_HUMAN90-155
 
  2A:90-155
B:90-155
Biological Unit 1 (2, 6)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1BIR_REPEAT_1PS01282 BIR repeat.XIAP_HUMAN26-93
163-230
 
265-330
 
  2-
A:87-105
-
A:106-154
-
BIRC7_HUMAN87-154
 
  1A:87-154
-
2BIR_REPEAT_2PS50143 BIR repeat profile.XIAP_HUMAN29-94
166-231
 
268-331
 
  2-
A:90-105
-
A:106-155
-
BIRC7_HUMAN90-155
 
  1A:90-155
-
Biological Unit 2 (2, 6)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1BIR_REPEAT_1PS01282 BIR repeat.XIAP_HUMAN26-93
163-230
 
265-330
 
  2-
-
B:87-105
-
B:106-154
BIRC7_HUMAN87-154
 
  1-
B:87-154
2BIR_REPEAT_2PS50143 BIR repeat profile.XIAP_HUMAN29-94
166-231
 
268-331
 
  2-
-
B:90-105
-
B:106-155
BIRC7_HUMAN90-155
 
  1-
B:90-155

(-) Exons   (3, 6)

Asymmetric Unit (3, 6)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.2aENST000003711992aENSE00001810722X:122993877-122994143267XIAP_HUMAN-00--
1.3cENST000003711993cENSE00002176074X:123019481-123020389909XIAP_HUMAN1-2932932A:78-117 (gaps)
B:78-117 (gaps)
150
150
1.4bENST000003711994bENSE00001649641X:123022469-123022568100XIAP_HUMAN293-326342A:117-150
B:117-150
34
34
1.5bENST000003711995bENSE00001630752X:123025088-12302516679XIAP_HUMAN326-352272A:150-167
B:150-169
18
20
1.6ENST000003711996ENSE00001714518X:123026581-12302662343XIAP_HUMAN353-367150--
1.7bENST000003711997bENSE00001653318X:123034343-123034543201XIAP_HUMAN367-434680--
1.8eENST000003711998eENSE00001454620X:123040838-1230478296992XIAP_HUMAN434-497640--

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:90
 aligned with BIRC7_HUMAN | Q96CA5 from UniProtKB/Swiss-Prot  Length:298

    Alignment length:90
                                    87        97       107       117       127       137       147       157       167
          BIRC7_HUMAN    78 GPAFPGMGSEELRLASFYDWPLTAEVPPELLAAAGFFHTGHQDKVRCFFCYGGLQSWKRGDDPWTEHAKWFPSCQFLLRSKGRDFVHSVQ 167
               SCOP domains ------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhh......hhhhhhhh.eee......eee.....ee.......hhhhhhhhhh..hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (1) ---------BIR_REPEAT_1  PDB: A:87-154 UniProt: 87-154                         ------------- PROSITE (1)
                PROSITE (2) ------------BIR_REPEAT_2  PDB: A:90-155 UniProt: 90-155                       ------------ PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------ Transcript
                 3uw5 A  78 GPAFPGMGSEELRLASFYDWPLTAEVPPELLAAAGFFHTGHQDKVRCFFCYGGLQSWKRGDDPWTEHAKWFPGCQFLLRSKGQEYINNIH 167
                                    87        97       107       117       127       137       147       157       167

Chain A from PDB  Type:PROTEIN  Length:90
 aligned with XIAP_HUMAN | P98170 from UniProtKB/Swiss-Prot  Length:497

    Alignment length:200
                                   153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343
           XIAP_HUMAN   144 GQVVDISDTIYPRNPAMYSEEARLKSFQNWPDYAHLTPRELASAGLYYTGIGDQVQCFCCGGKLKNWEPCDRAWSEHRRHFPNCFFVLGRNLNIRSESDAVSSDRNFPNSTNLPRNPSMADYEARIFTFGTWIYSVNKEQLARAGFYALGEGDKVKCFHCGGGLTDWKPSEDPWEQHAKWYPGCKYLLEQKGQEYINNIH 343
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .----------..hhhhhhhhhhhhhhhhh......hh----------------------------------------------------------------------------------------------------hhhhhh.eee......eee.....ee.......hhhhhhhhhh..hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -------------------BIR_REPEAT_1  PDB: A:87-105 UniProt: 163-230                        ----------------------------------BIR_REPEAT_1  PDB: A:106-154 UniProt: 265-330                     ------------- PROSITE (1)
                PROSITE (2) ----------------------BIR_REPEAT_2  PDB: A:90-105 UniProt: 166-231                      ------------------------------------BIR_REPEAT_2  PDB: A:106-155 UniProt: 268-331                   ------------ PROSITE (2)
           Transcript 1 (1) Exon 1.3c  PDB: A:78-117 (gaps) UniProt: 1-293 [INCOMPLETE]                                                                                           --------------------------------Exon 1.5b          Transcript 1 (1)
           Transcript 1 (2) -----------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.4b  PDB: A:117-150         ----------------- Transcript 1 (2)
                 3uw5 A  78 G----------PAFPGMGSEELRLASFYDWPLTAEVPP----------------------------------------------------------------------------------------------------ELLAAAGFFHTGHQDKVRCFFCYGGLQSWKRGDDPWTEHAKWFPGCQFLLRSKGQEYINNIH 167
                            |        - |      87        97       | -         -         -         -         -         -         -         -         -         -       107       117       127       137       147       157       167
                           78         79                       105                                                                                                  106                                                             

Chain B from PDB  Type:PROTEIN  Length:92
 aligned with BIRC7_HUMAN | Q96CA5 from UniProtKB/Swiss-Prot  Length:298

    Alignment length:92
                                    87        97       107       117       127       137       147       157       167  
          BIRC7_HUMAN    78 GPAFPGMGSEELRLASFYDWPLTAEVPPELLAAAGFFHTGHQDKVRCFFCYGGLQSWKRGDDPWTEHAKWFPSCQFLLRSKGRDFVHSVQET 169
               SCOP domains -------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhh......hhhhhhhh.eee......eee.....ee.......hhhhhhhhhh..hhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ---------BIR_REPEAT_1  PDB: B:87-154 UniProt: 87-154                         --------------- PROSITE (1)
                PROSITE (2) ------------BIR_REPEAT_2  PDB: B:90-155 UniProt: 90-155                       -------------- PROSITE (2)
                 Transcript -------------------------------------------------------------------------------------------- Transcript
                 3uw5 B  78 GPAFPGMGSEELRLASFYDWPLTAEVPPELLAAAGFFHTGHQDKVRCFFCYGGLQSWKRGDDPWTEHAKWFPGCQFLLRSKGQEYINNIHLT 169
                                    87        97       107       117       127       137       147       157       167  

Chain B from PDB  Type:PROTEIN  Length:92
 aligned with XIAP_HUMAN | P98170 from UniProtKB/Swiss-Prot  Length:497

    Alignment length:202
                                   153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343  
           XIAP_HUMAN   144 GQVVDISDTIYPRNPAMYSEEARLKSFQNWPDYAHLTPRELASAGLYYTGIGDQVQCFCCGGKLKNWEPCDRAWSEHRRHFPNCFFVLGRNLNIRSESDAVSSDRNFPNSTNLPRNPSMADYEARIFTFGTWIYSVNKEQLARAGFYALGEGDKVKCFHCGGGLTDWKPSEDPWEQHAKWYPGCKYLLEQKGQEYINNIHLT 345
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .----------..hhhhhhhhhhhhhhhhh......hh----------------------------------------------------------------------------------------------------hhhhhh.eee......eee.....ee.......hhhhhhhhhh..hhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -------------------BIR_REPEAT_1  PDB: B:87-105 UniProt: 163-230                        ----------------------------------BIR_REPEAT_1  PDB: B:106-154 UniProt: 265-330                     --------------- PROSITE (1)
                PROSITE (2) ----------------------BIR_REPEAT_2  PDB: B:90-105 UniProt: 166-231                      ------------------------------------BIR_REPEAT_2  PDB: B:106-155 UniProt: 268-331                   -------------- PROSITE (2)
           Transcript 1 (1) Exon 1.3c  PDB: B:78-117 (gaps) UniProt: 1-293 [INCOMPLETE]                                                                                           --------------------------------Exon 1.5b            Transcript 1 (1)
           Transcript 1 (2) -----------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.4b  PDB: B:117-150         ------------------- Transcript 1 (2)
                 3uw5 B  78 G----------PAFPGMGSEELRLASFYDWPLTAEVPP----------------------------------------------------------------------------------------------------ELLAAAGFFHTGHQDKVRCFFCYGGLQSWKRGDDPWTEHAKWFPGCQFLLRSKGQEYINNIHLT 169
                            |        - |      87        97       | -         -         -         -         -         -         -         -         -         -       107       117       127       137       147       157       167  
                           78         79                       105                                                                                                  106                                                               

Chain Y from PDB  Type:PROTEIN  Length:4
                                    
               SCOP domains ---- SCOP domains
               CATH domains ---- CATH domains
               Pfam domains ---- Pfam domains
         Sec.struct. author .... Sec.struct. author
                 SAPs(SNPs) ---- SAPs(SNPs)
                    PROSITE ---- PROSITE
                 Transcript ---- Transcript
                 3uw5 Y   1 axPx   4
                            || |
                            1-MAA
                             2-CHG
                               4-0DQ

Chain Z from PDB  Type:PROTEIN  Length:4
                                    
               SCOP domains ---- SCOP domains
               CATH domains ---- CATH domains
               Pfam domains ---- Pfam domains
         Sec.struct. author .... Sec.struct. author
                 SAPs(SNPs) ---- SAPs(SNPs)
                    PROSITE ---- PROSITE
                 Transcript ---- Transcript
                 3uw5 Z   1 axPx   4
                            || |
                            || |
                            1-MAA
                             2-CHG
                               4-0DQ

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3UW5)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3UW5)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3UW5)

(-) Gene Ontology  (37, 54)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (BIRC7_HUMAN | Q96CA5)
molecular function
    GO:0004869    cysteine-type endopeptidase inhibitor activity    Stops, prevents or reduces the activity of a cysteine-type endopeptidase, any enzyme that hydrolyzes peptide bonds in polypeptides by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile.
    GO:0019899    enzyme binding    Interacting selectively and non-covalently with any enzyme.
    GO:0016874    ligase activity    Catalysis of the joining of two substances, or two groups within a single molecule, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0030414    peptidase inhibitor activity    Stops, prevents or reduces the activity of a peptidase, any enzyme that catalyzes the hydrolysis peptide bonds.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0004842    ubiquitin-protein transferase activity    Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages.
    GO:0008270    zinc ion binding    Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
    GO:0007257    activation of JUN kinase activity    The initiation of the activity of the inactive enzyme JUN kinase (JNK).
    GO:0006915    apoptotic process    A programmed cell death process which begins when a cell receives an internal (e.g. DNA damage) or external signal (e.g. an extracellular death ligand), and proceeds through a series of biochemical events (signaling pathway phase) which trigger an execution phase. The execution phase is the last step of an apoptotic process, and is typically characterized by rounding-up of the cell, retraction of pseudopodes, reduction of cellular volume (pyknosis), chromatin condensation, nuclear fragmentation (karyorrhexis), plasma membrane blebbing and fragmentation of the cell into apoptotic bodies. When the execution phase is completed, the cell has died.
    GO:1990001    inhibition of cysteine-type endopeptidase activity involved in apoptotic process    Any process that prevents the activation of an inactive cysteine-type endopeptidase involved in an apoptotic process.
    GO:0090307    mitotic spindle assembly    The aggregation, arrangement and bonding together of a set of components to form the spindle that contributes to the process of mitosis.
    GO:0043066    negative regulation of apoptotic process    Any process that stops, prevents, or reduces the frequency, rate or extent of cell death by apoptotic process.
    GO:0010466    negative regulation of peptidase activity    Any process that stops or reduces the rate of peptidase activity, the hydrolysis of peptide bonds within proteins.
    GO:0016567    protein ubiquitination    The process in which one or more ubiquitin groups are added to a protein.
    GO:0042127    regulation of cell proliferation    Any process that modulates the frequency, rate or extent of cell proliferation.
    GO:0070247    regulation of natural killer cell apoptotic process    Any process that modulates the occurrence or rate of natural killer cell death by apoptotic process.
    GO:0009966    regulation of signal transduction    Any process that modulates the frequency, rate or extent of signal transduction.
cellular component
    GO:0005794    Golgi apparatus    A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions.
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
    GO:0005876    spindle microtubule    Any microtubule that is part of a mitotic or meiotic spindle; anchored at one spindle pole.

Chain A,B   (XIAP_HUMAN | P98170)
molecular function
    GO:0004869    cysteine-type endopeptidase inhibitor activity    Stops, prevents or reduces the activity of a cysteine-type endopeptidase, any enzyme that hydrolyzes peptide bonds in polypeptides by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile.
    GO:0043027    cysteine-type endopeptidase inhibitor activity involved in apoptotic process    Stops, prevents or reduces the activity of a cysteine-type endopeptidase involved in the apoptotic process.
    GO:0016874    ligase activity    Catalysis of the joining of two substances, or two groups within a single molecule, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0030414    peptidase inhibitor activity    Stops, prevents or reduces the activity of a peptidase, any enzyme that catalyzes the hydrolysis peptide bonds.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0061630    ubiquitin protein ligase activity    Catalysis of the transfer of ubiquitin to a substrate protein via the reaction X-ubiquitin + S -> X + S-ubiquitin, where X is either an E2 or E3 enzyme, the X-ubiquitin linkage is a thioester bond, and the S-ubiquitin linkage is an amide bond: an isopeptide bond between the C-terminal glycine of ubiquitin and the epsilon-amino group of lysine residues in the substrate or, in the linear extension of ubiquitin chains, a peptide bond the between the C-terminal glycine and N-terminal methionine of ubiquitin residues.
    GO:0004842    ubiquitin-protein transferase activity    Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages.
    GO:0008270    zinc ion binding    Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
    GO:0016055    Wnt signaling pathway    The series of molecular signals initiated by binding of a Wnt protein to a frizzled family receptor on the surface of the target cell and ending with a change in cell state.
    GO:0006915    apoptotic process    A programmed cell death process which begins when a cell receives an internal (e.g. DNA damage) or external signal (e.g. an extracellular death ligand), and proceeds through a series of biochemical events (signaling pathway phase) which trigger an execution phase. The execution phase is the last step of an apoptotic process, and is typically characterized by rounding-up of the cell, retraction of pseudopodes, reduction of cellular volume (pyknosis), chromatin condensation, nuclear fragmentation (karyorrhexis), plasma membrane blebbing and fragmentation of the cell into apoptotic bodies. When the execution phase is completed, the cell has died.
    GO:0006974    cellular response to DNA damage stimulus    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism.
    GO:0055070    copper ion homeostasis    Any process involved in the maintenance of an internal steady state of copper ions within an organism or cell.
    GO:1990001    inhibition of cysteine-type endopeptidase activity involved in apoptotic process    Any process that prevents the activation of an inactive cysteine-type endopeptidase involved in an apoptotic process.
    GO:0090307    mitotic spindle assembly    The aggregation, arrangement and bonding together of a set of components to form the spindle that contributes to the process of mitosis.
    GO:0043066    negative regulation of apoptotic process    Any process that stops, prevents, or reduces the frequency, rate or extent of cell death by apoptotic process.
    GO:0043154    negative regulation of cysteine-type endopeptidase activity involved in apoptotic process    Any process that stops, prevents, or reduces the frequency, rate or extent of a cysteine-type endopeptidase activity involved in the apoptotic process.
    GO:0010466    negative regulation of peptidase activity    Any process that stops or reduces the rate of peptidase activity, the hydrolysis of peptide bonds within proteins.
    GO:0090263    positive regulation of canonical Wnt signaling pathway    Any process that increases the rate, frequency, or extent of the Wnt signaling pathway through beta-catenin, the series of molecular signals initiated by binding of a Wnt protein to a frizzled family receptor on the surface of the target cell, followed by propagation of the signal via beta-catenin, and ending with a change in transcription of target genes.
    GO:1902530    positive regulation of protein linear polyubiquitination    Any process that activates or increases the frequency, rate or extent of protein linear polyubiquitination.
    GO:0031398    positive regulation of protein ubiquitination    Any process that activates or increases the frequency, rate or extent of the addition of ubiquitin groups to a protein.
    GO:0016567    protein ubiquitination    The process in which one or more ubiquitin groups are added to a protein.
    GO:0030510    regulation of BMP signaling pathway    Any process that modulates the frequency, rate or extent of the activity of any BMP receptor signaling pathway.
    GO:0042127    regulation of cell proliferation    Any process that modulates the frequency, rate or extent of cell proliferation.
    GO:0050727    regulation of inflammatory response    Any process that modulates the frequency, rate or extent of the inflammatory response, the immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents.
    GO:0045088    regulation of innate immune response    Any process that modulates the frequency, rate or extent of the innate immune response, the organism's first line of defense against infection.
    GO:0070424    regulation of nucleotide-binding oligomerization domain containing signaling pathway    Any process that modulates the frequency, rate, or extent of a nucleotide-binding oligomerization domain containing (NOD) pathway.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0005654    nucleoplasm    That part of the nuclear content other than the chromosomes or the nucleolus.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
    GO:0005876    spindle microtubule    Any microtubule that is part of a mitotic or meiotic spindle; anchored at one spindle pole.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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        BIRC7_HUMAN | Q96CA51oxn 1oxq 1oy7 1tw6 2i3h 2i3i 3f7g 3f7h 3f7i 3gt9 3gta 4auq
        XIAP_HUMAN | P981701c9q 1f9x 1g3f 1g73 1i3o 1i4o 1i51 1kmc 1nw9 1tfq 1tft 2ecg 2jk7 2kna 2opy 2opz 2poi 2pop 2qra 2vsl 3clx 3cm2 3cm7 3eyl 3g76 3hl5 3uw4 4ec4 4hy0 4ic2 4ic3 4j3y 4j44 4j45 4j46 4j47 4j48 4kju 4kjv 4kmp 4mtz 4oxc 4wvs 4wvt 4wvu 5c0k 5c0l 5c3h 5c3k 5c7a 5c7b 5c7c 5c7d 5c83 5c84 5m6e 5m6f 5m6h 5m6l 5m6m

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 3UW5)