3TXF - JenaLib

Asymmetric Unit (46, 46)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	TYR A:23 , ASN A:113 , DMS A:133	BINDING SITE FOR RESIDUE CL A 1130
02	AC2	SOFTWARE	SER A:24 , GLY A:26 , GLN A:121 , GOL A:146 , GOL A:156	BINDING SITE FOR RESIDUE CL A 1131
03	AC3	SOFTWARE	GLY A:67 , ARG A:68 , THR A:69 , SER A:72 , DMS A:148 , DMS A:153 , HOH A:2029	BINDING SITE FOR RESIDUE CL A 1132
04	AC4	SOFTWARE	PHE A:38 , DMS A:135 , GOL A:159	BINDING SITE FOR RESIDUE CL A 1134
05	AC5	SOFTWARE	ASN A:65 , PRO A:79 , GOL A:165	BINDING SITE FOR RESIDUE CL A 1135
06	AC6	SOFTWARE	ARG A:73 , ASN A:74	BINDING SITE FOR RESIDUE CL A 1136
07	AC7	SOFTWARE	ALA A:42 , ARG A:68 , GOL A:142 , HOH A:2044	BINDING SITE FOR RESIDUE CL A 1137
08	AC8	SOFTWARE	SER A:60 , CYS A:64 , SER A:72 , ARG A:73 , DMS A:148	BINDING SITE FOR RESIDUE NA A 1138
09	AC9	SOFTWARE	HIS A:15 , GOL A:143	BINDING SITE FOR RESIDUE CPT A 130
10	BC1	SOFTWARE	ARG A:5 , TRP A:123 , GOL A:139 , GOL A:147 , DMS A:149 , GOL A:159 , GOL A:162 , HOH A:2048	BINDING SITE FOR RESIDUE DMS A 131
11	BC2	SOFTWARE	ALA A:10 , LYS A:13 , ARG A:14 , ARG A:128 , LEU A:129	BINDING SITE FOR RESIDUE DMS A 132
12	BC3	SOFTWARE	ARG A:21 , GLU A:35 , GOL A:141 , CL A:1130 , HOH A:2038 , HOH A:2041 , HOH A:2043	BINDING SITE FOR RESIDUE DMS A 133
13	BC4	SOFTWARE	ARG A:45 , ASN A:46 , ARG A:128 , DMS A:136 , GOL A:143	BINDING SITE FOR RESIDUE DMS A 134
14	BC5	SOFTWARE	LYS A:33 , ASN A:37 , TRP A:62 , ARG A:73 , DMS A:155 , GOL A:156 , GOL A:157 , GOL A:159 , GOL A:163 , CL A:1134 , HOH A:2045 , HOH A:2046	BINDING SITE FOR RESIDUE DMS A 135
15	BC6	SOFTWARE	GLY A:16 , LYS A:96 , DMS A:134 , GOL A:143	BINDING SITE FOR RESIDUE DMS A 136
16	BC7	SOFTWARE	PRO A:79 , SER A:86 , DMS A:151 , GOL A:165	BINDING SITE FOR RESIDUE DMS A 137
17	BC8	SOFTWARE	GLN A:57 , ILE A:58 , ASN A:59 , TRP A:63 , ILE A:98 , ALA A:107 , HOH A:2069 , HOH A:2112	BINDING SITE FOR RESIDUE DMS A 138
18	BC9	SOFTWARE	ARG A:61 , TRP A:62 , GLY A:71 , GOL A:146 , GOL A:156 , HOH A:2046 , HOH A:2072 , HOH A:2083	BINDING SITE FOR RESIDUE GOL A 801
19	CC1	SOFTWARE	ARG A:5 , SER A:100 , ASP A:101 , GLY A:102 , DMS A:131 , GOL A:141 , GOL A:145 , GOL A:147 , DMS A:152 , GOL A:166 , HOH A:2133	BINDING SITE FOR RESIDUE GOL A 139
20	CC2	SOFTWARE	TRP A:63 , LEU A:75 , ASP A:101 , DMS A:155 , GOL A:159 , GOL A:160 , GOL A:163	BINDING SITE FOR RESIDUE GOL A 140
21	CC3	SOFTWARE	ARG A:21 , VAL A:99 , GLY A:102 , VAL A:109 , DMS A:133 , GOL A:139 , GOL A:145 , HOH A:2109	BINDING SITE FOR RESIDUE GOL A 141
22	CC4	SOFTWARE	ASN A:19 , ARG A:45 , ARG A:68 , DMS A:150 , GOL A:164 , CL A:1137 , HOH A:2024	BINDING SITE FOR RESIDUE GOL A 142
23	CC5	SOFTWARE	ARG A:14 , GLY A:16 , ARG A:128 , CPT A:130 , DMS A:134 , DMS A:136	BINDING SITE FOR RESIDUE GOL A 143
24	CC6	SOFTWARE	LYS A:13 , PRO A:70 , LEU A:129 , GOL A:158	BINDING SITE FOR RESIDUE GOL A 144
25	CC7	SOFTWARE	ARG A:21 , ARG A:125 , GLY A:126 , GOL A:139 , GOL A:141 , DMS A:152	BINDING SITE FOR RESIDUE GOL A 145
26	CC8	SOFTWARE	GLN A:121 , ILE A:124 , DMS A:150 , GOL A:156 , GOL A:164 , GOL A:801 , CL A:1131	BINDING SITE FOR RESIDUE GOL A 146
27	CC9	SOFTWARE	ASP A:101 , ASN A:103 , ASP A:119 , DMS A:131 , GOL A:139 , GOL A:159 , GOL A:162 , GOL A:166	BINDING SITE FOR RESIDUE GOL A 147
28	DC1	SOFTWARE	SER A:60 , CYS A:64 , ASN A:65 , ASP A:66 , GLY A:67 , ARG A:68 , THR A:69 , SER A:72 , CL A:1132 , NA A:1138	BINDING SITE FOR RESIDUE DMS A 148
29	DC2	SOFTWARE	PHE A:34 , THR A:118 , DMS A:131 , GOL A:157 , GOL A:159 , GOL A:162 , HOH A:2125 , HOH A:2128 , HOH A:2131	BINDING SITE FOR RESIDUE DMS A 149
30	DC3	SOFTWARE	ASN A:37 , ARG A:68 , GOL A:142 , GOL A:146 , GOL A:164 , HOH A:2078	BINDING SITE FOR RESIDUE DMS A 150
31	DC4	SOFTWARE	ILE A:78 , PRO A:79 , DMS A:137 , HOH A:2034 , HOH A:2088	BINDING SITE FOR RESIDUE DMS A 151
32	DC5	SOFTWARE	ARG A:5 , SER A:100 , GOL A:139 , GOL A:145 , GOL A:160	BINDING SITE FOR RESIDUE DMS A 152
33	DC6	SOFTWARE	SER A:72 , CL A:1132 , HOH A:2029 , HOH A:2075 , HOH A:2079 , HOH A:2081	BINDING SITE FOR RESIDUE DMS A 153
34	DC7	SOFTWARE	ASN A:103 , ASN A:106 , ALA A:107	BINDING SITE FOR RESIDUE DMS A 154
35	DC8	SOFTWARE	GLY A:4 , ARG A:5 , LEU A:75 , DMS A:135 , GOL A:140 , GOL A:160	BINDING SITE FOR RESIDUE DMS A 155
36	DC9	SOFTWARE	SER A:24 , ASN A:37 , VAL A:120 , GLN A:121 , DMS A:135 , GOL A:146 , GOL A:157 , GOL A:163 , GOL A:164 , GOL A:801 , CL A:1131 , HOH A:2046	BINDING SITE FOR RESIDUE GOL A 156
37	EC1	SOFTWARE	SER A:24 , LYS A:33 , PHE A:34 , ASN A:37 , DMS A:135 , DMS A:149 , GOL A:156 , GOL A:159 , GOL A:164 , HOH A:2031 , HOH A:2036 , HOH A:2116	BINDING SITE FOR RESIDUE GOL A 157
38	EC2	SOFTWARE	ASP A:48 , ARG A:61 , THR A:69 , PRO A:70 , SER A:72 , GOL A:144	BINDING SITE FOR RESIDUE GOL A 158
39	EC3	SOFTWARE	TRP A:123 , DMS A:131 , DMS A:135 , GOL A:140 , GOL A:147 , DMS A:149 , GOL A:157 , GOL A:163 , CL A:1134	BINDING SITE FOR RESIDUE GOL A 159
40	EC4	SOFTWARE	LEU A:75 , LYS A:97 , GOL A:140 , DMS A:152 , DMS A:155 , HOH A:2008	BINDING SITE FOR RESIDUE GOL A 160
41	EC5	SOFTWARE	TYR A:20 , LYS A:96 , LYS A:97 , SER A:100 , HOH A:2103	BINDING SITE FOR RESIDUE GOL A 161
42	EC6	SOFTWARE	GLY A:117 , THR A:118 , ASP A:119 , DMS A:131 , GOL A:147 , DMS A:149 , GOL A:166 , HOH A:2124	BINDING SITE FOR RESIDUE GOL A 162
43	EC7	SOFTWARE	TRP A:62 , ASP A:119 , GLN A:121 , ARG A:125 , DMS A:135 , GOL A:140 , GOL A:156 , GOL A:159	BINDING SITE FOR RESIDUE GOL A 163
44	EC8	SOFTWARE	ASN A:19 , GLY A:22 , SER A:24 , ASN A:37 , GOL A:142 , GOL A:146 , DMS A:150 , GOL A:156 , GOL A:157 , HOH A:2036 , HOH A:2116	BINDING SITE FOR RESIDUE GOL A 164
45	EC9	SOFTWARE	LYS A:1 , DMS A:137 , CL A:1135 , HOH A:2003 , HOH A:2076	BINDING SITE FOR RESIDUE GOL A 165
46	FC1	SOFTWARE	GLY A:102 , ASN A:103 , ARG A:112 , GOL A:139 , GOL A:147 , GOL A:162	BINDING SITE FOR RESIDUE GOL A 166

SS Bonds (4, 4)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (2, 2)

Exons (4, 4)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:129
 aligned with LYSC_CHICK | P00698 from UniProtKB/Swiss-Prot  Length:147

    Alignment length:129
                                    28        38        48        58        68        78        88        98       108       118       128       138         
           LYSC_CHICK    19 KVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNRNTDGSTDYGILQINSRWWCNDGRTPGSRNLCNIPCSALLSSDITASVNCAKKIVSDGNGMNAWVAWRNRCKGTDVQAWIRGCRL 147
               SCOP domains d3txfa_ A: Lysozyme                                                                                                               SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh.....eee.....eee....ee...................hhhhhhh..hhhhhhhhhhhhh..hhhhhhhhhhhhh...hhhhhhh.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) LACTALBUMIN_LYSOZYME_2  PDB: A:1-129 UniProt: 19-147                                                                              PROSITE (1)
                PROSITE (2) ---------------------------------------------------------------------------LACTALBUMIN_LYSOZYM----------------------------------- PROSITE (2)
           Transcript 1 (1) Exon 1.1a  PDB: A:1-28      -----------------------------------------------------Exon 1.3  PDB: A:82-108    --------------------- Transcript 1 (1)
           Transcript 1 (2) ---------------------------Exon 1.2  PDB: A:28-82 UniProt: 46-100                 -------------------------Exon 1.4a              Transcript 1 (2)
                 3txf A   1 KVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNRNTDGSTDYGILQINSRWWCNDGRTPGSRNLCNIPCSALLSSDITASVNCAKKIVSDGNGMNAWVAWRNRCKGTDVQAWIRGCRL 129
                                    10        20        30        40        50        60        70        80        90       100       110       120

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (1, 1)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (13, 13)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A (LYSC_CHICK | P00698)

molecular function
	GO:0003824	catalytic activity	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
	GO:0016798	hydrolase activity, acting on glycosyl bonds	Catalysis of the hydrolysis of any glycosyl bond.
	GO:0042802	identical protein binding	Interacting selectively and non-covalently with an identical protein or proteins.
	GO:0003796	lysozyme activity	Catalysis of the hydrolysis of the beta-(1->4) linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues in a peptidoglycan.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
	GO:0019835	cytolysis	The rupture of cell membranes and the loss of cytoplasm.
	GO:0042742	defense response to bacterium	Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism.
	GO:0008152	metabolic process	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
	GO:0001895	retina homeostasis	A tissue homeostatic process involved in the maintenance of an internal equilibrium within the retina of the eye, including control of cellular proliferation and death and control of metabolic function.
cellular component
	GO:0070062	extracellular exosome	A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
	GO:0005576	extracellular region	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
	GO:0005615	extracellular space	That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid.

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	Cis Peptide Bonds
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	3txf
		Family and Domain Information	:	ProDom \| SYSTERS
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	LYSC_CHICK \| P00698
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	3.2.1.17
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Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (5, 46)

Sites (46, 46)