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3TXF
Asym. Unit
Info
Asym.Unit (55 KB)
Biol.Unit 1 (49 KB)
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(1)
Title
:
HEWL CO-CRYSTALLIZATION WITH CISPLATIN IN DMSO MEDIA WITH GLYCEROL AS THE CRYOPROTECTANT
Authors
:
S. W. M. Tanley, A. M. M. Schreurs, J. R. Helliwell, L. M. J. Kroon-Batenb
Date
:
23 Sep 11 (Deposition) - 30 Jan 13 (Release) - 27 Mar 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.69
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Hen Egg White Lysozyme (Hewl), Bacterial Cell Wall Lysis, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. W. Tanley, A. M. Schreurs, J. R. Helliwell, L. M. Kroon-Batenburg
Experience With Exchange And Archiving Of Raw Data: Comparison Of Data From Two Diffractometers And Four Software Packages On A Series Of Lysozyme Crystals.
J. Appl. Crystallogr. V. 46 108 2013
[
close entry info
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Hetero Components
(5, 46)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
1e: CHLORIDE ION (CLe)
1f: CHLORIDE ION (CLf)
1g: CHLORIDE ION (CLg)
2a: CISPLATIN (CPTa)
3a: DIMETHYL SULFOXIDE (DMSa)
3b: DIMETHYL SULFOXIDE (DMSb)
3c: DIMETHYL SULFOXIDE (DMSc)
3d: DIMETHYL SULFOXIDE (DMSd)
3e: DIMETHYL SULFOXIDE (DMSe)
3f: DIMETHYL SULFOXIDE (DMSf)
3g: DIMETHYL SULFOXIDE (DMSg)
3h: DIMETHYL SULFOXIDE (DMSh)
3i: DIMETHYL SULFOXIDE (DMSi)
3j: DIMETHYL SULFOXIDE (DMSj)
3k: DIMETHYL SULFOXIDE (DMSk)
3l: DIMETHYL SULFOXIDE (DMSl)
3m: DIMETHYL SULFOXIDE (DMSm)
3n: DIMETHYL SULFOXIDE (DMSn)
3o: DIMETHYL SULFOXIDE (DMSo)
3p: DIMETHYL SULFOXIDE (DMSp)
4a: GLYCEROL (GOLa)
4b: GLYCEROL (GOLb)
4c: GLYCEROL (GOLc)
4d: GLYCEROL (GOLd)
4e: GLYCEROL (GOLe)
4f: GLYCEROL (GOLf)
4g: GLYCEROL (GOLg)
4h: GLYCEROL (GOLh)
4i: GLYCEROL (GOLi)
4j: GLYCEROL (GOLj)
4k: GLYCEROL (GOLk)
4l: GLYCEROL (GOLl)
4m: GLYCEROL (GOLm)
4n: GLYCEROL (GOLn)
4o: GLYCEROL (GOLo)
4p: GLYCEROL (GOLp)
4q: GLYCEROL (GOLq)
4r: GLYCEROL (GOLr)
4s: GLYCEROL (GOLs)
4t: GLYCEROL (GOLt)
4u: GLYCEROL (GOLu)
5a: SODIUM ION (NAa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
7
Ligand/Ion
CHLORIDE ION
2
CPT
1
Ligand/Ion
CISPLATIN
3
DMS
16
Ligand/Ion
DIMETHYL SULFOXIDE
4
GOL
21
Ligand/Ion
GLYCEROL
5
NA
1
Ligand/Ion
SODIUM ION
[
close Hetero Component info
]
Sites
(46, 46)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
43: EC7 (SOFTWARE)
44: EC8 (SOFTWARE)
45: EC9 (SOFTWARE)
46: FC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TYR A:23 , ASN A:113 , DMS A:133
BINDING SITE FOR RESIDUE CL A 1130
02
AC2
SOFTWARE
SER A:24 , GLY A:26 , GLN A:121 , GOL A:146 , GOL A:156
BINDING SITE FOR RESIDUE CL A 1131
03
AC3
SOFTWARE
GLY A:67 , ARG A:68 , THR A:69 , SER A:72 , DMS A:148 , DMS A:153 , HOH A:2029
BINDING SITE FOR RESIDUE CL A 1132
04
AC4
SOFTWARE
PHE A:38 , DMS A:135 , GOL A:159
BINDING SITE FOR RESIDUE CL A 1134
05
AC5
SOFTWARE
ASN A:65 , PRO A:79 , GOL A:165
BINDING SITE FOR RESIDUE CL A 1135
06
AC6
SOFTWARE
ARG A:73 , ASN A:74
BINDING SITE FOR RESIDUE CL A 1136
07
AC7
SOFTWARE
ALA A:42 , ARG A:68 , GOL A:142 , HOH A:2044
BINDING SITE FOR RESIDUE CL A 1137
08
AC8
SOFTWARE
SER A:60 , CYS A:64 , SER A:72 , ARG A:73 , DMS A:148
BINDING SITE FOR RESIDUE NA A 1138
09
AC9
SOFTWARE
HIS A:15 , GOL A:143
BINDING SITE FOR RESIDUE CPT A 130
10
BC1
SOFTWARE
ARG A:5 , TRP A:123 , GOL A:139 , GOL A:147 , DMS A:149 , GOL A:159 , GOL A:162 , HOH A:2048
BINDING SITE FOR RESIDUE DMS A 131
11
BC2
SOFTWARE
ALA A:10 , LYS A:13 , ARG A:14 , ARG A:128 , LEU A:129
BINDING SITE FOR RESIDUE DMS A 132
12
BC3
SOFTWARE
ARG A:21 , GLU A:35 , GOL A:141 , CL A:1130 , HOH A:2038 , HOH A:2041 , HOH A:2043
BINDING SITE FOR RESIDUE DMS A 133
13
BC4
SOFTWARE
ARG A:45 , ASN A:46 , ARG A:128 , DMS A:136 , GOL A:143
BINDING SITE FOR RESIDUE DMS A 134
14
BC5
SOFTWARE
LYS A:33 , ASN A:37 , TRP A:62 , ARG A:73 , DMS A:155 , GOL A:156 , GOL A:157 , GOL A:159 , GOL A:163 , CL A:1134 , HOH A:2045 , HOH A:2046
BINDING SITE FOR RESIDUE DMS A 135
15
BC6
SOFTWARE
GLY A:16 , LYS A:96 , DMS A:134 , GOL A:143
BINDING SITE FOR RESIDUE DMS A 136
16
BC7
SOFTWARE
PRO A:79 , SER A:86 , DMS A:151 , GOL A:165
BINDING SITE FOR RESIDUE DMS A 137
17
BC8
SOFTWARE
GLN A:57 , ILE A:58 , ASN A:59 , TRP A:63 , ILE A:98 , ALA A:107 , HOH A:2069 , HOH A:2112
BINDING SITE FOR RESIDUE DMS A 138
18
BC9
SOFTWARE
ARG A:61 , TRP A:62 , GLY A:71 , GOL A:146 , GOL A:156 , HOH A:2046 , HOH A:2072 , HOH A:2083
BINDING SITE FOR RESIDUE GOL A 801
19
CC1
SOFTWARE
ARG A:5 , SER A:100 , ASP A:101 , GLY A:102 , DMS A:131 , GOL A:141 , GOL A:145 , GOL A:147 , DMS A:152 , GOL A:166 , HOH A:2133
BINDING SITE FOR RESIDUE GOL A 139
20
CC2
SOFTWARE
TRP A:63 , LEU A:75 , ASP A:101 , DMS A:155 , GOL A:159 , GOL A:160 , GOL A:163
BINDING SITE FOR RESIDUE GOL A 140
21
CC3
SOFTWARE
ARG A:21 , VAL A:99 , GLY A:102 , VAL A:109 , DMS A:133 , GOL A:139 , GOL A:145 , HOH A:2109
BINDING SITE FOR RESIDUE GOL A 141
22
CC4
SOFTWARE
ASN A:19 , ARG A:45 , ARG A:68 , DMS A:150 , GOL A:164 , CL A:1137 , HOH A:2024
BINDING SITE FOR RESIDUE GOL A 142
23
CC5
SOFTWARE
ARG A:14 , GLY A:16 , ARG A:128 , CPT A:130 , DMS A:134 , DMS A:136
BINDING SITE FOR RESIDUE GOL A 143
24
CC6
SOFTWARE
LYS A:13 , PRO A:70 , LEU A:129 , GOL A:158
BINDING SITE FOR RESIDUE GOL A 144
25
CC7
SOFTWARE
ARG A:21 , ARG A:125 , GLY A:126 , GOL A:139 , GOL A:141 , DMS A:152
BINDING SITE FOR RESIDUE GOL A 145
26
CC8
SOFTWARE
GLN A:121 , ILE A:124 , DMS A:150 , GOL A:156 , GOL A:164 , GOL A:801 , CL A:1131
BINDING SITE FOR RESIDUE GOL A 146
27
CC9
SOFTWARE
ASP A:101 , ASN A:103 , ASP A:119 , DMS A:131 , GOL A:139 , GOL A:159 , GOL A:162 , GOL A:166
BINDING SITE FOR RESIDUE GOL A 147
28
DC1
SOFTWARE
SER A:60 , CYS A:64 , ASN A:65 , ASP A:66 , GLY A:67 , ARG A:68 , THR A:69 , SER A:72 , CL A:1132 , NA A:1138
BINDING SITE FOR RESIDUE DMS A 148
29
DC2
SOFTWARE
PHE A:34 , THR A:118 , DMS A:131 , GOL A:157 , GOL A:159 , GOL A:162 , HOH A:2125 , HOH A:2128 , HOH A:2131
BINDING SITE FOR RESIDUE DMS A 149
30
DC3
SOFTWARE
ASN A:37 , ARG A:68 , GOL A:142 , GOL A:146 , GOL A:164 , HOH A:2078
BINDING SITE FOR RESIDUE DMS A 150
31
DC4
SOFTWARE
ILE A:78 , PRO A:79 , DMS A:137 , HOH A:2034 , HOH A:2088
BINDING SITE FOR RESIDUE DMS A 151
32
DC5
SOFTWARE
ARG A:5 , SER A:100 , GOL A:139 , GOL A:145 , GOL A:160
BINDING SITE FOR RESIDUE DMS A 152
33
DC6
SOFTWARE
SER A:72 , CL A:1132 , HOH A:2029 , HOH A:2075 , HOH A:2079 , HOH A:2081
BINDING SITE FOR RESIDUE DMS A 153
34
DC7
SOFTWARE
ASN A:103 , ASN A:106 , ALA A:107
BINDING SITE FOR RESIDUE DMS A 154
35
DC8
SOFTWARE
GLY A:4 , ARG A:5 , LEU A:75 , DMS A:135 , GOL A:140 , GOL A:160
BINDING SITE FOR RESIDUE DMS A 155
36
DC9
SOFTWARE
SER A:24 , ASN A:37 , VAL A:120 , GLN A:121 , DMS A:135 , GOL A:146 , GOL A:157 , GOL A:163 , GOL A:164 , GOL A:801 , CL A:1131 , HOH A:2046
BINDING SITE FOR RESIDUE GOL A 156
37
EC1
SOFTWARE
SER A:24 , LYS A:33 , PHE A:34 , ASN A:37 , DMS A:135 , DMS A:149 , GOL A:156 , GOL A:159 , GOL A:164 , HOH A:2031 , HOH A:2036 , HOH A:2116
BINDING SITE FOR RESIDUE GOL A 157
38
EC2
SOFTWARE
ASP A:48 , ARG A:61 , THR A:69 , PRO A:70 , SER A:72 , GOL A:144
BINDING SITE FOR RESIDUE GOL A 158
39
EC3
SOFTWARE
TRP A:123 , DMS A:131 , DMS A:135 , GOL A:140 , GOL A:147 , DMS A:149 , GOL A:157 , GOL A:163 , CL A:1134
BINDING SITE FOR RESIDUE GOL A 159
40
EC4
SOFTWARE
LEU A:75 , LYS A:97 , GOL A:140 , DMS A:152 , DMS A:155 , HOH A:2008
BINDING SITE FOR RESIDUE GOL A 160
41
EC5
SOFTWARE
TYR A:20 , LYS A:96 , LYS A:97 , SER A:100 , HOH A:2103
BINDING SITE FOR RESIDUE GOL A 161
42
EC6
SOFTWARE
GLY A:117 , THR A:118 , ASP A:119 , DMS A:131 , GOL A:147 , DMS A:149 , GOL A:166 , HOH A:2124
BINDING SITE FOR RESIDUE GOL A 162
43
EC7
SOFTWARE
TRP A:62 , ASP A:119 , GLN A:121 , ARG A:125 , DMS A:135 , GOL A:140 , GOL A:156 , GOL A:159
BINDING SITE FOR RESIDUE GOL A 163
44
EC8
SOFTWARE
ASN A:19 , GLY A:22 , SER A:24 , ASN A:37 , GOL A:142 , GOL A:146 , DMS A:150 , GOL A:156 , GOL A:157 , HOH A:2036 , HOH A:2116
BINDING SITE FOR RESIDUE GOL A 164
45
EC9
SOFTWARE
LYS A:1 , DMS A:137 , CL A:1135 , HOH A:2003 , HOH A:2076
BINDING SITE FOR RESIDUE GOL A 165
46
FC1
SOFTWARE
GLY A:102 , ASN A:103 , ARG A:112 , GOL A:139 , GOL A:147 , GOL A:162
BINDING SITE FOR RESIDUE GOL A 166
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: LACTALBUMIN_LYSOZYME_2 (A:1-129)
2: LACTALBUMIN_LYSOZYME_1 (A:76-94)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
LACTALBUMIN_LYSOZYME_2
PS51348
Alpha-lactalbumin / lysozyme C family profile.
LYSC_CHICK
19-147
1
A:1-129
2
LACTALBUMIN_LYSOZYME_1
PS00128
Alpha-lactalbumin / lysozyme C signature.
LYSC_CHICK
94-112
1
A:76-94
[
close PROSITE info
]
Exons
(4, 4)
Info
All Exons
Exon 1.1a (A:1-28)
Exon 1.2 (A:28-82)
Exon 1.3 (A:82-108)
Exon 1.4a (A:108-129)
View:
Select:
Label:
All Exon Boundaries
1: Boundary -/1.1a
2: Boundary 1.1a/1.2
3: Boundary 1.2/1.3
4: Boundary 1.3/1.4a
5: Boundary 1.4a/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENSGALT00000016196
1a
ENSGALE00000107726
chr1:
37298007-37298210
204
LYSC_CHICK
1-46
46
1
A:1-28
28
1.2
ENSGALT00000016196
2
ENSGALE00000107723
chr1:
37299463-37299624
162
LYSC_CHICK
46-100
55
1
A:28-82
55
1.3
ENSGALT00000016196
3
ENSGALE00000107724
chr1:
37301396-37301474
79
LYSC_CHICK
100-126
27
1
A:82-108
27
1.4a
ENSGALT00000016196
4a
ENSGALE00000107725
chr1:
37301556-37301734
179
LYSC_CHICK
126-147
22
1
A:108-129
22
[
close EXON info
]
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d3txfa_ (A:)
View:
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Classes
(
)
(
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(
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(
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(
)
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Lysozyme-like
(1361)
Superfamily
:
Lysozyme-like
(1361)
Family
:
C-type lysozyme
(738)
Protein domain
:
Lysozyme
(696)
Chicken (Gallus gallus) [TaxId: 9031]
(459)
1a
d3txfa_
A:
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
[
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)
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