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(-) Description

Title :  CRYSTAL STRUCTURE OF TYPE III RUBISCO SP4 MUTANT COMPLEXED WITH 2-CABP
 
Authors :  Y. Nishitani, M. Fujihashi, T. Doi, S. Yoshida, H. Atomi, T. Imanaka, K.
Date :  23 Oct 09  (Deposition) - 06 Oct 10  (Release) - 02 Feb 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.09
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F,G,H,I,J
Keywords :  Ribulose-1, 5-Bisphosphate Carboxylase/Oxygenase, Rubisco, Carbon Dioxide Fixation, Lyase, Magnesium, Metal-Binding, Monooxygenase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Nishitani, S. Yoshida, M. Fujihashi, K. Kitagawa, T. Doi, H. Atomi, T. Imanaka, K. Miki
Structure-Based Catalytic Optimization Of A Type Iii Rubisc From A Hyperthermophile
J. Biol. Chem. V. 285 39339 2010
PubMed-ID: 20926376  |  Reference-DOI: 10.1074/JBC.M110.147587

(-) Compounds

Molecule 1 - RIBULOSE BISPHOSPHATE CARBOXYLASE
    Chains: A, B, C, D, E, F, G, H, I, J
    EC Number: 4.1.1.39
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET-21A(+)
    Expression System Strain: ROSETTA2(DE3)PLYSS
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: RBCL, TK2290
    Mutation: YES
    Organism Scientific: THERMOCOCCUS KODAKARAENSIS
    Organism Taxid: 69014
    Strain: KOD1
    Synonym: RUBISCO

 Structural Features

(-) Chains, Units

  12345678910
Asymmetric/Biological Unit : ABCDEFGHIJ

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 30)

Asymmetric/Biological Unit (3, 30)
No.NameCountTypeFull Name
1CAP10Ligand/Ion2-CARBOXYARABINITOL-1,5-DIPHOSPHATE
2KCX10Mod. Amino AcidLYSINE NZ-CARBOXYLIC ACID
3MG10Ligand/IonMAGNESIUM ION

(-) Sites  (20, 20)

Asymmetric Unit (20, 20)
No.NameEvidenceResiduesDescription
01AC1SOFTWARELYS A:165 , KCX A:189 , ASP A:191 , GLU A:192 , CAP A:600 , ASN H:111BINDING SITE FOR RESIDUE MG A 500
02AC2SOFTWAREVAL A:161 , LYS A:163 , LYS A:165 , KCX A:189 , ASP A:191 , GLU A:192 , HIS A:281 , ARG A:282 , HIS A:314 , LYS A:322 , LEU A:323 , SER A:367 , GLY A:368 , GLY A:369 , GLN A:389 , GLY A:391 , GLY A:392 , HOH A:495 , MG A:500 , HOH A:645 , HOH A:1278 , HOH A:1893 , HOH A:2850 , THR H:54 , TRP H:55 , ASN H:111BINDING SITE FOR RESIDUE CAP A 600
03AC3SOFTWAREKCX B:189 , ASP B:191 , GLU B:192 , CAP B:600BINDING SITE FOR RESIDUE MG B 500
04AC4SOFTWARELYS B:163 , LYS B:165 , KCX B:189 , ASP B:191 , GLU B:192 , HIS B:281 , ARG B:282 , HIS B:314 , LYS B:322 , LEU B:323 , SER B:367 , GLY B:368 , GLY B:369 , GLN B:389 , GLY B:391 , GLY B:392 , HOH B:467 , HOH B:468 , HOH B:472 , HOH B:499 , MG B:500 , HOH B:2398 , HOH B:2720 , HOH B:2839 , GLU G:49 , TRP G:55 , ASN G:111 , HOH G:466BINDING SITE FOR RESIDUE CAP B 600
05AC5SOFTWAREKCX C:189 , ASP C:191 , GLU C:192 , CAP C:600 , ASN F:111BINDING SITE FOR RESIDUE MG C 500
06AC6SOFTWARELYS C:163 , LYS C:165 , KCX C:189 , ASP C:191 , GLU C:192 , HIS C:281 , ARG C:282 , HIS C:314 , LYS C:322 , LEU C:323 , SER C:367 , GLY C:368 , GLY C:369 , GLN C:389 , GLY C:391 , GLY C:392 , HOH C:445 , HOH C:457 , HOH C:461 , HOH C:487 , MG C:500 , HOH C:616 , HOH C:691 , HOH C:2321 , GLU F:49 , TRP F:55 , ASN F:111 , HOH F:503 , HOH F:1009BINDING SITE FOR RESIDUE CAP C 600
07AC7SOFTWAREKCX D:189 , ASP D:191 , GLU D:192 , CAP D:600BINDING SITE FOR RESIDUE MG D 500
08AC8SOFTWARELYS D:163 , LYS D:165 , KCX D:189 , ASP D:191 , GLU D:192 , HIS D:281 , ARG D:282 , HIS D:314 , LYS D:322 , LEU D:323 , SER D:367 , GLY D:368 , GLY D:369 , GLN D:389 , GLY D:391 , GLY D:392 , HOH D:445 , HOH D:452 , HOH D:458 , MG D:500 , HOH D:510 , HOH D:1721 , HOH D:2695 , HOH D:2855 , GLU J:49 , TRP J:55 , ASN J:111 , HOH J:2762BINDING SITE FOR RESIDUE CAP D 600
09AC9SOFTWAREKCX E:189 , ASP E:191 , GLU E:192 , CAP E:600BINDING SITE FOR RESIDUE MG E 500
10BC1SOFTWARELYS E:163 , LYS E:165 , KCX E:189 , ASP E:191 , GLU E:192 , HIS E:281 , ARG E:282 , HIS E:314 , LYS E:322 , LEU E:323 , SER E:367 , GLY E:368 , GLY E:369 , GLN E:389 , GLY E:391 , GLY E:392 , HOH E:483 , HOH E:494 , MG E:500 , HOH E:654 , HOH E:676 , HOH E:1879 , HOH E:2240 , GLU I:49 , TRP I:55 , ASN I:111 , HOH I:463 , HOH I:465BINDING SITE FOR RESIDUE CAP E 600
11BC2SOFTWAREASN C:111 , KCX F:189 , ASP F:191 , GLU F:192 , CAP F:600BINDING SITE FOR RESIDUE MG F 500
12BC3SOFTWAREGLU C:49 , THR C:54 , TRP C:55 , ASN C:111 , HOH C:451 , HOH C:478 , LYS F:163 , LYS F:165 , KCX F:189 , ASP F:191 , GLU F:192 , HIS F:281 , ARG F:282 , HIS F:314 , LYS F:322 , LEU F:323 , SER F:367 , GLY F:368 , GLY F:369 , GLN F:389 , GLY F:391 , GLY F:392 , HOH F:445 , HOH F:464 , HOH F:490 , HOH F:495 , HOH F:498 , MG F:500BINDING SITE FOR RESIDUE CAP F 600
13BC4SOFTWAREASN B:111 , KCX G:189 , ASP G:191 , GLU G:192 , CAP G:600BINDING SITE FOR RESIDUE MG G 500
14BC5SOFTWAREGLU B:49 , TRP B:55 , ASN B:111 , HOH B:448 , HOH B:454 , LYS G:163 , LYS G:165 , KCX G:189 , ASP G:191 , GLU G:192 , HIS G:281 , ARG G:282 , HIS G:314 , LYS G:322 , LEU G:323 , SER G:367 , GLY G:368 , GLY G:369 , GLN G:389 , GLY G:391 , GLY G:392 , HOH G:446 , HOH G:456 , HOH G:469 , HOH G:485 , MG G:500 , HOH G:530 , HOH G:1761BINDING SITE FOR RESIDUE CAP G 600
15BC6SOFTWAREKCX H:189 , ASP H:191 , GLU H:192 , CAP H:600BINDING SITE FOR RESIDUE MG H 500
16BC7SOFTWARETRP A:55 , ASN A:111 , HOH A:1659 , LYS H:163 , LYS H:165 , KCX H:189 , ASP H:191 , GLU H:192 , HIS H:281 , ARG H:282 , HIS H:314 , LYS H:322 , LEU H:323 , SER H:367 , GLY H:368 , GLY H:369 , GLN H:389 , GLY H:391 , GLY H:392 , HOH H:457 , MG H:500 , HOH H:1169 , HOH H:1230 , HOH H:2657 , HOH H:2710BINDING SITE FOR RESIDUE CAP H 600
17BC8SOFTWAREKCX I:189 , ASP I:191 , GLU I:192 , CAP I:600BINDING SITE FOR RESIDUE MG I 500
18BC9SOFTWAREGLU E:49 , TRP E:55 , ASN E:111 , HOH E:505 , LYS I:163 , LYS I:165 , KCX I:189 , ASP I:191 , GLU I:192 , HIS I:281 , ARG I:282 , HIS I:314 , LYS I:322 , LEU I:323 , SER I:367 , GLY I:368 , GLY I:369 , GLN I:389 , GLY I:391 , GLY I:392 , HOH I:445 , HOH I:451 , HOH I:471 , HOH I:478 , HOH I:482 , HOH I:483 , HOH I:491 , MG I:500BINDING SITE FOR RESIDUE CAP I 600
19CC1SOFTWAREASN D:111 , KCX J:189 , ASP J:191 , GLU J:192 , CAP J:600BINDING SITE FOR RESIDUE MG J 500
20CC2SOFTWAREGLU D:49 , TRP D:55 , ASN D:111 , HOH D:482 , HOH D:484 , LYS J:163 , LYS J:165 , KCX J:189 , ASP J:191 , GLU J:192 , HIS J:281 , ARG J:282 , HIS J:314 , LYS J:322 , LEU J:323 , SER J:367 , GLY J:368 , GLY J:369 , GLN J:389 , GLY J:391 , GLY J:392 , HOH J:445 , HOH J:481 , MG J:500 , HOH J:578 , HOH J:602 , HOH J:1892 , HOH J:1895BINDING SITE FOR RESIDUE CAP J 600

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3KDN)

(-) Cis Peptide Bonds  (10, 10)

Asymmetric/Biological Unit
No.Residues
1Lys A:163 -Pro A:164
2Lys B:163 -Pro B:164
3Lys C:163 -Pro C:164
4Lys D:163 -Pro D:164
5Lys E:163 -Pro E:164
6Lys F:163 -Pro F:164
7Lys G:163 -Pro G:164
8Lys H:163 -Pro H:164
9Lys I:163 -Pro I:164
10Lys J:163 -Pro J:164

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3KDN)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3KDN)

(-) Exons   (0, 0)

(no "Exon" information available for 3KDN)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:437
 aligned with RBL_THEKO | O93627 from UniProtKB/Swiss-Prot  Length:444

    Alignment length:437
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       
            RBL_THEKO     8 IYDYYVDKGYEPSKKRDIIAVFRVTPAEGYTIEQAAGAVAAESSTGTWTTLYPWYEQERWADLSAKAYDFHDMGDGSWIVRIAYPFHAFEEANLPGLLASIAGNIFGMKRVKGLRLEDLYFPEKLIREFDGPAFGIEGVRKMLEIKDRPIYGVVPKPKVGYSPEEFEKLAYDLLSNGADYMKDDENLTSPWYNRFEERAEIMAKIIDKVENETGEKKTWFANITADLLEMEQRLEVLADLGLKHAMVDVVITGWGALRYIRDLAADYGLAIHGHRAMHAAFTRNPYHGISMFVLAKLYRLIGIDQLHVGTAGAGKLEGGKWDVIQNARILRESHYKPDENDVFHLEQKFYSIKAAFPTSSGGLHPGNIQPVIEALGTDIVLQLGGGTLGHPDGPAAGARAVRQAIDAIMQGIPLDEYAKTHKELARALEKWGHVTPV 444
               SCOP domains d3kdna1 A:8-135 automated matches                                                                                               d3kdna2 A:136-444 automated matches                                                                                                                                                                                                                                                                                   SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhh..........eeeeeeeeee....hhhhhhhhhhhhh............hhhhhhhhh.eeeeeee.....eeeeeeee.hhh...hhhhhhhhhhhhhhhh..eeeeeeeeee.hhhhhh......hhhhhhhhhhh.....eeee........hhhhhhhhhhhhhhh...eee...........hhhhhhhhhhhhhhhhhhhhh...eeeee...hhhhhhhhhhhhhhhh..eeeeehhhhhhhhhhhhhhhhhhhh.eeeee...hhhhhh....eehhhhhhhhhhhhh..eee...........hhhhhhhhhhhhhh.ee...........ee.......eeeee.......hhhhhhhhh...eee.hhhhhh...hhhhhhhhhhhhhhhhh...hhhhhhh.hhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3kdn A   8 IYDYYVDKGYEPSKKRDIIAVFRVTPAEGYTIEQAAGAVAAESSTGTWTTLYPWYEQERWADLSAKAYDFHDMGDGSWIVRIAYPFHAFEEANLPGLLASIAGNIFGMKRVKGLRLEDLYFPEKLIREFDGPAFGIEGVRKMLEIKDRPIYGVVPKPKVGYSPEEFEKLAYDLLSNGADYMkDDENLTSPWYNRFEERAEIMAKIIDKVENETGEKKTWFANITADLLEMEQRLEVLADLGLKHAMVDVVITGWGALRYIRDLAADYGLAIHGHRAMHAAFTRNPYHGISMFVLAKLYRLIGIDQLHVGTAGAGKLEGERDITIQNARILRESHYKPDENDVFHLEQKFYSIKAAFPTSSGGLHPGNIQPVIEALGTDIVLQLGGGTLGHPDGPAAGARAVRQAIDAIMQGIPLDEYAKTHKELARALEKWGHVTPV 444
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187 |     197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       
                                                                                                                                                                                                               189-KCX                                                                                                                                                                                                                                                           


Chain B from PDB  Type:PROTEIN  Length:437
 aligned with RBL_THEKO | O93627 from UniProtKB/Swiss-Prot  Length:444

    Alignment length:437
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       
            RBL_THEKO     8 IYDYYVDKGYEPSKKRDIIAVFRVTPAEGYTIEQAAGAVAAESSTGTWTTLYPWYEQERWADLSAKAYDFHDMGDGSWIVRIAYPFHAFEEANLPGLLASIAGNIFGMKRVKGLRLEDLYFPEKLIREFDGPAFGIEGVRKMLEIKDRPIYGVVPKPKVGYSPEEFEKLAYDLLSNGADYMKDDENLTSPWYNRFEERAEIMAKIIDKVENETGEKKTWFANITADLLEMEQRLEVLADLGLKHAMVDVVITGWGALRYIRDLAADYGLAIHGHRAMHAAFTRNPYHGISMFVLAKLYRLIGIDQLHVGTAGAGKLEGGKWDVIQNARILRESHYKPDENDVFHLEQKFYSIKAAFPTSSGGLHPGNIQPVIEALGTDIVLQLGGGTLGHPDGPAAGARAVRQAIDAIMQGIPLDEYAKTHKELARALEKWGHVTPV 444
               SCOP domains d3kdnb1 B:8-135 automated matches                                                                                               d3kdnb2 B:136-444 automated matches                                                                                                                                                                                                                                                                                   SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhh..........eeeeeeeeee....hhhhhhhhhhhhh............hhhhhhhhh.eeeeeee.....eeeeeeee.hhh...hhhhhhhhhhhhhhhh..eeeeeeeeee.hhhhhh......hhhhhhhhhhh.....eeee........hhhhhhhhhhhhhhh...eee...........hhhhhhhhhhhhhhhhhhhhh...eeeee...hhhhhhhhhhhhhhh...eeeeehhhhhhhhhhhhhhhhhhh..eeeee...hhhhhh....eehhhhhhhhhhhhh..eee...........hhhhhhhhhhhhhh.ee...........ee.......eeeee.......hhhhhhhhh...eee.hhhhhh...hhhhhhhhhhhhhhhhhhh.hhhhhh..hhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3kdn B   8 IYDYYVDKGYEPSKKRDIIAVFRVTPAEGYTIEQAAGAVAAESSTGTWTTLYPWYEQERWADLSAKAYDFHDMGDGSWIVRIAYPFHAFEEANLPGLLASIAGNIFGMKRVKGLRLEDLYFPEKLIREFDGPAFGIEGVRKMLEIKDRPIYGVVPKPKVGYSPEEFEKLAYDLLSNGADYMkDDENLTSPWYNRFEERAEIMAKIIDKVENETGEKKTWFANITADLLEMEQRLEVLADLGLKHAMVDVVITGWGALRYIRDLAADYGLAIHGHRAMHAAFTRNPYHGISMFVLAKLYRLIGIDQLHVGTAGAGKLEGERDITIQNARILRESHYKPDENDVFHLEQKFYSIKAAFPTSSGGLHPGNIQPVIEALGTDIVLQLGGGTLGHPDGPAAGARAVRQAIDAIMQGIPLDEYAKTHKELARALEKWGHVTPV 444
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187 |     197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       
                                                                                                                                                                                                               189-KCX                                                                                                                                                                                                                                                           


Chain C from PDB  Type:PROTEIN  Length:437
 aligned with RBL_THEKO | O93627 from UniProtKB/Swiss-Prot  Length:444

    Alignment length:437
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       
            RBL_THEKO     8 IYDYYVDKGYEPSKKRDIIAVFRVTPAEGYTIEQAAGAVAAESSTGTWTTLYPWYEQERWADLSAKAYDFHDMGDGSWIVRIAYPFHAFEEANLPGLLASIAGNIFGMKRVKGLRLEDLYFPEKLIREFDGPAFGIEGVRKMLEIKDRPIYGVVPKPKVGYSPEEFEKLAYDLLSNGADYMKDDENLTSPWYNRFEERAEIMAKIIDKVENETGEKKTWFANITADLLEMEQRLEVLADLGLKHAMVDVVITGWGALRYIRDLAADYGLAIHGHRAMHAAFTRNPYHGISMFVLAKLYRLIGIDQLHVGTAGAGKLEGGKWDVIQNARILRESHYKPDENDVFHLEQKFYSIKAAFPTSSGGLHPGNIQPVIEALGTDIVLQLGGGTLGHPDGPAAGARAVRQAIDAIMQGIPLDEYAKTHKELARALEKWGHVTPV 444
               SCOP domains d3kdnc1 C:8-135 automated matches                                                                                               d3kdnc2 C:136-444 automated matches                                                                                                                                                                                                                                                                                   SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhh..........eeeeeeeeee....hhhhhhhhhhhhh............hhhhhhhh..eeeeeee.....eeeeeeee.hhh...hhhhhhhhhhhhhhhh..eeeeeeeeee.hhhhhh......hhhhhhhhhhh.....eeee........hhhhhhhhhhhhhhh...eee...........hhhhhhhhhhhhhhhhhhhhh...eeeee...hhhhhhhhhhhhhhhh..eeeeehhhhhhhhhhhhhhhhhhh..eeeee...hhhhhh....eehhhhhhhhhhhhh..eee...........hhhhhhhhhhhhhh.ee...........ee.......eeeee...hhhhhhhhhhhhh...eee.hhhhhh...hhhhhhhhhhhhhhhhhh..hhhhhhh.hhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3kdn C   8 IYDYYVDKGYEPSKKRDIIAVFRVTPAEGYTIEQAAGAVAAESSTGTWTTLYPWYEQERWADLSAKAYDFHDMGDGSWIVRIAYPFHAFEEANLPGLLASIAGNIFGMKRVKGLRLEDLYFPEKLIREFDGPAFGIEGVRKMLEIKDRPIYGVVPKPKVGYSPEEFEKLAYDLLSNGADYMkDDENLTSPWYNRFEERAEIMAKIIDKVENETGEKKTWFANITADLLEMEQRLEVLADLGLKHAMVDVVITGWGALRYIRDLAADYGLAIHGHRAMHAAFTRNPYHGISMFVLAKLYRLIGIDQLHVGTAGAGKLEGERDITIQNARILRESHYKPDENDVFHLEQKFYSIKAAFPTSSGGLHPGNIQPVIEALGTDIVLQLGGGTLGHPDGPAAGARAVRQAIDAIMQGIPLDEYAKTHKELARALEKWGHVTPV 444
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187 |     197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       
                                                                                                                                                                                                               189-KCX                                                                                                                                                                                                                                                           


Chain D from PDB  Type:PROTEIN  Length:437
 aligned with RBL_THEKO | O93627 from UniProtKB/Swiss-Prot  Length:444

    Alignment length:437
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       
            RBL_THEKO     8 IYDYYVDKGYEPSKKRDIIAVFRVTPAEGYTIEQAAGAVAAESSTGTWTTLYPWYEQERWADLSAKAYDFHDMGDGSWIVRIAYPFHAFEEANLPGLLASIAGNIFGMKRVKGLRLEDLYFPEKLIREFDGPAFGIEGVRKMLEIKDRPIYGVVPKPKVGYSPEEFEKLAYDLLSNGADYMKDDENLTSPWYNRFEERAEIMAKIIDKVENETGEKKTWFANITADLLEMEQRLEVLADLGLKHAMVDVVITGWGALRYIRDLAADYGLAIHGHRAMHAAFTRNPYHGISMFVLAKLYRLIGIDQLHVGTAGAGKLEGGKWDVIQNARILRESHYKPDENDVFHLEQKFYSIKAAFPTSSGGLHPGNIQPVIEALGTDIVLQLGGGTLGHPDGPAAGARAVRQAIDAIMQGIPLDEYAKTHKELARALEKWGHVTPV 444
               SCOP domains d3kdnd1 D:8-135 automated matches                                                                                               d3kdnd2 D:136-444 automated matches                                                                                                                                                                                                                                                                                   SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhh..........eeeeeeeeee....hhhhhhhhhhhhh............hhhhhhhhh.eeeeeee.....eeeeeeee.hhh...hhhhhhhhhhhhhhhh..eeeeeeeeee.hhhhhh......hhhhhhhhhhh.....eeee........hhhhhhhhhhhhhhh...eee...........hhhhhhhhhhhhhhhhhhhhh...eeeee...hhhhhhhhhhhhhhhh..eeeeehhhhhhhhhhhhhhhhhhh..eeeee...hhhhhh....eehhhhhhhhhhhhh..eee...........hhhhhhhhhhhhhh.ee...........ee.......eeeee...hhhhhhhhhhhhh...eee.hhhhhh...hhhhhhhhhhhhhhhhhhh.hhhhhh..hhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3kdn D   8 IYDYYVDKGYEPSKKRDIIAVFRVTPAEGYTIEQAAGAVAAESSTGTWTTLYPWYEQERWADLSAKAYDFHDMGDGSWIVRIAYPFHAFEEANLPGLLASIAGNIFGMKRVKGLRLEDLYFPEKLIREFDGPAFGIEGVRKMLEIKDRPIYGVVPKPKVGYSPEEFEKLAYDLLSNGADYMkDDENLTSPWYNRFEERAEIMAKIIDKVENETGEKKTWFANITADLLEMEQRLEVLADLGLKHAMVDVVITGWGALRYIRDLAADYGLAIHGHRAMHAAFTRNPYHGISMFVLAKLYRLIGIDQLHVGTAGAGKLEGERDITIQNARILRESHYKPDENDVFHLEQKFYSIKAAFPTSSGGLHPGNIQPVIEALGTDIVLQLGGGTLGHPDGPAAGARAVRQAIDAIMQGIPLDEYAKTHKELARALEKWGHVTPV 444
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187 |     197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       
                                                                                                                                                                                                               189-KCX                                                                                                                                                                                                                                                           


Chain E from PDB  Type:PROTEIN  Length:438
 aligned with RBL_THEKO | O93627 from UniProtKB/Swiss-Prot  Length:444

    Alignment length:438
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436        
            RBL_THEKO     7 TIYDYYVDKGYEPSKKRDIIAVFRVTPAEGYTIEQAAGAVAAESSTGTWTTLYPWYEQERWADLSAKAYDFHDMGDGSWIVRIAYPFHAFEEANLPGLLASIAGNIFGMKRVKGLRLEDLYFPEKLIREFDGPAFGIEGVRKMLEIKDRPIYGVVPKPKVGYSPEEFEKLAYDLLSNGADYMKDDENLTSPWYNRFEERAEIMAKIIDKVENETGEKKTWFANITADLLEMEQRLEVLADLGLKHAMVDVVITGWGALRYIRDLAADYGLAIHGHRAMHAAFTRNPYHGISMFVLAKLYRLIGIDQLHVGTAGAGKLEGGKWDVIQNARILRESHYKPDENDVFHLEQKFYSIKAAFPTSSGGLHPGNIQPVIEALGTDIVLQLGGGTLGHPDGPAAGARAVRQAIDAIMQGIPLDEYAKTHKELARALEKWGHVTPV 444
               SCOP domains d3kdne1 E:7-135 automated matches                                                                                                d3kdne2 E:136-444 automated matches                                                                                                                                                                                                                                                                                   SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhh..........eeeeeeeeee....hhhhhhhhhhhhh............hhhhhhhhh.eeeeeee.....eeeeeeee.hhh...hhhhhhhhhhhhhhhh..eeeeeeeeee.hhhhhh......hhhhhhhhhhh.....eeee........hhhhhhhhhhhhhhh...eee...........hhhhhhhhhhhhhhhhhhhhh...eeeee...hhhhhhhhhhhhhhh...eeeeehhhhhhhhhhhhhhhhhhhh.eeeee...hhhhhh....eehhhhhhhhhhhhh..eee...........hhhhhhhhhhhhhh.ee...........ee.......eeeee......hhhhhhhhhh...eee.hhhhhh...hhhhhhhhhhhhhhhhhh..hhhhhhh.hhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3kdn E   7 TIYDYYVDKGYEPSKKRDIIAVFRVTPAEGYTIEQAAGAVAAESSTGTWTTLYPWYEQERWADLSAKAYDFHDMGDGSWIVRIAYPFHAFEEANLPGLLASIAGNIFGMKRVKGLRLEDLYFPEKLIREFDGPAFGIEGVRKMLEIKDRPIYGVVPKPKVGYSPEEFEKLAYDLLSNGADYMkDDENLTSPWYNRFEERAEIMAKIIDKVENETGEKKTWFANITADLLEMEQRLEVLADLGLKHAMVDVVITGWGALRYIRDLAADYGLAIHGHRAMHAAFTRNPYHGISMFVLAKLYRLIGIDQLHVGTAGAGKLEGERDITIQNARILRESHYKPDENDVFHLEQKFYSIKAAFPTSSGGLHPGNIQPVIEALGTDIVLQLGGGTLGHPDGPAAGARAVRQAIDAIMQGIPLDEYAKTHKELARALEKWGHVTPV 444
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186  |    196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436        
                                                                                                                                                                                                                189-KCX                                                                                                                                                                                                                                                           


Chain F from PDB  Type:PROTEIN  Length:437
 aligned with RBL_THEKO | O93627 from UniProtKB/Swiss-Prot  Length:444

    Alignment length:437
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       
            RBL_THEKO     8 IYDYYVDKGYEPSKKRDIIAVFRVTPAEGYTIEQAAGAVAAESSTGTWTTLYPWYEQERWADLSAKAYDFHDMGDGSWIVRIAYPFHAFEEANLPGLLASIAGNIFGMKRVKGLRLEDLYFPEKLIREFDGPAFGIEGVRKMLEIKDRPIYGVVPKPKVGYSPEEFEKLAYDLLSNGADYMKDDENLTSPWYNRFEERAEIMAKIIDKVENETGEKKTWFANITADLLEMEQRLEVLADLGLKHAMVDVVITGWGALRYIRDLAADYGLAIHGHRAMHAAFTRNPYHGISMFVLAKLYRLIGIDQLHVGTAGAGKLEGGKWDVIQNARILRESHYKPDENDVFHLEQKFYSIKAAFPTSSGGLHPGNIQPVIEALGTDIVLQLGGGTLGHPDGPAAGARAVRQAIDAIMQGIPLDEYAKTHKELARALEKWGHVTPV 444
               SCOP domains d3kdnf1 F:8-135 automated matches                                                                                               d3kdnf2 F:136-444 automated matches                                                                                                                                                                                                                                                                                   SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhh..........eeeeeeeeee....hhhhhhhhhhhhh............hhhhhhhh..eeeeeee.....eeeeeeee.hhh...hhhhhhhhhhhhhhhh..eeeeeeeeee.hhhhhh......hhhhhhhhhhh.....eeee........hhhhhhhhhhhhhhh...eee...........hhhhhhhhhhhhhhhhhhhhh...eeeee...hhhhhhhhhhhhhhh...eeeeehhhhhhhhhhhhhhhhhhh..eeeee...hhhhhh....eehhhhhhhhhhhhh..eee...........hhhhhhhhhhhhhh.ee...........ee.......eeeee...hhhhhhhhhhhhh...eee.hhhhhh...hhhhhhhhhhhhhhhhhh..hhhhhhh.hhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3kdn F   8 IYDYYVDKGYEPSKKRDIIAVFRVTPAEGYTIEQAAGAVAAESSTGTWTTLYPWYEQERWADLSAKAYDFHDMGDGSWIVRIAYPFHAFEEANLPGLLASIAGNIFGMKRVKGLRLEDLYFPEKLIREFDGPAFGIEGVRKMLEIKDRPIYGVVPKPKVGYSPEEFEKLAYDLLSNGADYMkDDENLTSPWYNRFEERAEIMAKIIDKVENETGEKKTWFANITADLLEMEQRLEVLADLGLKHAMVDVVITGWGALRYIRDLAADYGLAIHGHRAMHAAFTRNPYHGISMFVLAKLYRLIGIDQLHVGTAGAGKLEGERDITIQNARILRESHYKPDENDVFHLEQKFYSIKAAFPTSSGGLHPGNIQPVIEALGTDIVLQLGGGTLGHPDGPAAGARAVRQAIDAIMQGIPLDEYAKTHKELARALEKWGHVTPV 444
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187 |     197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       
                                                                                                                                                                                                               189-KCX                                                                                                                                                                                                                                                           


Chain G from PDB  Type:PROTEIN  Length:437
 aligned with RBL_THEKO | O93627 from UniProtKB/Swiss-Prot  Length:444

    Alignment length:437
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       
            RBL_THEKO     8 IYDYYVDKGYEPSKKRDIIAVFRVTPAEGYTIEQAAGAVAAESSTGTWTTLYPWYEQERWADLSAKAYDFHDMGDGSWIVRIAYPFHAFEEANLPGLLASIAGNIFGMKRVKGLRLEDLYFPEKLIREFDGPAFGIEGVRKMLEIKDRPIYGVVPKPKVGYSPEEFEKLAYDLLSNGADYMKDDENLTSPWYNRFEERAEIMAKIIDKVENETGEKKTWFANITADLLEMEQRLEVLADLGLKHAMVDVVITGWGALRYIRDLAADYGLAIHGHRAMHAAFTRNPYHGISMFVLAKLYRLIGIDQLHVGTAGAGKLEGGKWDVIQNARILRESHYKPDENDVFHLEQKFYSIKAAFPTSSGGLHPGNIQPVIEALGTDIVLQLGGGTLGHPDGPAAGARAVRQAIDAIMQGIPLDEYAKTHKELARALEKWGHVTPV 444
               SCOP domains d3kdng1 G:8-135 automated matches                                                                                               d3kdng2 G:136-444 automated matches                                                                                                                                                                                                                                                                                   SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhh..........eeeeeeeeee....hhhhhhhhhhhhh............hhhhhhhhh.eeeeeee.....eeeeeeee.hhh...hhhhhhhhhhhhhhhh..eeeeeeeeee.hhhhhh......hhhhhhhhhhh.....eeee........hhhhhhhhhhhhhhh...eee...........hhhhhhhhhhhhhhhhhhhhh...eeeee...hhhhhhhhhhhhhhh...eeeeehhhhhhhhhhhhhhhhhhh..eeeee...hhhhhh....eehhhhhhhhhhhhh..eee...........hhhhhhhhhhhhhh.ee...........ee.......eeeee...hhhhhhhhhhhhh...eee.hhhhhh...hhhhhhhhhhhhhhhhhhh.hhhhhh..hhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3kdn G   8 IYDYYVDKGYEPSKKRDIIAVFRVTPAEGYTIEQAAGAVAAESSTGTWTTLYPWYEQERWADLSAKAYDFHDMGDGSWIVRIAYPFHAFEEANLPGLLASIAGNIFGMKRVKGLRLEDLYFPEKLIREFDGPAFGIEGVRKMLEIKDRPIYGVVPKPKVGYSPEEFEKLAYDLLSNGADYMkDDENLTSPWYNRFEERAEIMAKIIDKVENETGEKKTWFANITADLLEMEQRLEVLADLGLKHAMVDVVITGWGALRYIRDLAADYGLAIHGHRAMHAAFTRNPYHGISMFVLAKLYRLIGIDQLHVGTAGAGKLEGERDITIQNARILRESHYKPDENDVFHLEQKFYSIKAAFPTSSGGLHPGNIQPVIEALGTDIVLQLGGGTLGHPDGPAAGARAVRQAIDAIMQGIPLDEYAKTHKELARALEKWGHVTPV 444
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187 |     197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       
                                                                                                                                                                                                               189-KCX                                                                                                                                                                                                                                                           


Chain H from PDB  Type:PROTEIN  Length:438
 aligned with RBL_THEKO | O93627 from UniProtKB/Swiss-Prot  Length:444

    Alignment length:438
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436        
            RBL_THEKO     7 TIYDYYVDKGYEPSKKRDIIAVFRVTPAEGYTIEQAAGAVAAESSTGTWTTLYPWYEQERWADLSAKAYDFHDMGDGSWIVRIAYPFHAFEEANLPGLLASIAGNIFGMKRVKGLRLEDLYFPEKLIREFDGPAFGIEGVRKMLEIKDRPIYGVVPKPKVGYSPEEFEKLAYDLLSNGADYMKDDENLTSPWYNRFEERAEIMAKIIDKVENETGEKKTWFANITADLLEMEQRLEVLADLGLKHAMVDVVITGWGALRYIRDLAADYGLAIHGHRAMHAAFTRNPYHGISMFVLAKLYRLIGIDQLHVGTAGAGKLEGGKWDVIQNARILRESHYKPDENDVFHLEQKFYSIKAAFPTSSGGLHPGNIQPVIEALGTDIVLQLGGGTLGHPDGPAAGARAVRQAIDAIMQGIPLDEYAKTHKELARALEKWGHVTPV 444
               SCOP domains d3kdnh1 H:7-135 automated matches                                                                                                d3kdnh2 H:136-444 automated matches                                                                                                                                                                                                                                                                                   SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhh..........eeeeeeeeee....hhhhhhhhhhhhh............hhhhhhhhh.eeeeeee.....eeeeeeee.hhh...hhhhhhhhhhhhhhhh..eeeeeeeeee.hhhhhh......hhhhhhhhhhh.....eeee........hhhhhhhhhhhhhhh...eee...........hhhhhhhhhhhhhhhhhhhhh...eeeee...hhhhhhhhhhhhhhh...eeeeehhhhhhhhhhhhhhhhhhh..eeeee...hhhhhh....eehhhhhhhhhhhhh..eee...........hhhhhhhhhhhhhh.ee...........ee.......eeeee.......hhhhhhhhh...eee.hhhhhh...hhhhhhhhhhhhhhhhhh..hhhhhhh.hhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3kdn H   7 TIYDYYVDKGYEPSKKRDIIAVFRVTPAEGYTIEQAAGAVAAESSTGTWTTLYPWYEQERWADLSAKAYDFHDMGDGSWIVRIAYPFHAFEEANLPGLLASIAGNIFGMKRVKGLRLEDLYFPEKLIREFDGPAFGIEGVRKMLEIKDRPIYGVVPKPKVGYSPEEFEKLAYDLLSNGADYMkDDENLTSPWYNRFEERAEIMAKIIDKVENETGEKKTWFANITADLLEMEQRLEVLADLGLKHAMVDVVITGWGALRYIRDLAADYGLAIHGHRAMHAAFTRNPYHGISMFVLAKLYRLIGIDQLHVGTAGAGKLEGERDITIQNARILRESHYKPDENDVFHLEQKFYSIKAAFPTSSGGLHPGNIQPVIEALGTDIVLQLGGGTLGHPDGPAAGARAVRQAIDAIMQGIPLDEYAKTHKELARALEKWGHVTPV 444
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186  |    196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436        
                                                                                                                                                                                                                189-KCX                                                                                                                                                                                                                                                           


Chain I from PDB  Type:PROTEIN  Length:436
 aligned with RBL_THEKO | O93627 from UniProtKB/Swiss-Prot  Length:444

    Alignment length:436
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438      
            RBL_THEKO     9 YDYYVDKGYEPSKKRDIIAVFRVTPAEGYTIEQAAGAVAAESSTGTWTTLYPWYEQERWADLSAKAYDFHDMGDGSWIVRIAYPFHAFEEANLPGLLASIAGNIFGMKRVKGLRLEDLYFPEKLIREFDGPAFGIEGVRKMLEIKDRPIYGVVPKPKVGYSPEEFEKLAYDLLSNGADYMKDDENLTSPWYNRFEERAEIMAKIIDKVENETGEKKTWFANITADLLEMEQRLEVLADLGLKHAMVDVVITGWGALRYIRDLAADYGLAIHGHRAMHAAFTRNPYHGISMFVLAKLYRLIGIDQLHVGTAGAGKLEGGKWDVIQNARILRESHYKPDENDVFHLEQKFYSIKAAFPTSSGGLHPGNIQPVIEALGTDIVLQLGGGTLGHPDGPAAGARAVRQAIDAIMQGIPLDEYAKTHKELARALEKWGHVTPV 444
               SCOP domains d3kdni1 I:9-135 automated matches                                                                                              d3kdni2 I:136-444 automated matches                                                                                                                                                                                                                                                                                   SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhh..........eeeeeeeeee....hhhhhhhhhhhhh............hhhhhhhhh.eeeeeee.....eeeeeeee.hhh...hhhhhhhhhhhhhhhh..eeeeeeeeee.hhhhhh......hhhhhhhhhhh.....eeee........hhhhhhhhhhhhhhh...eee...........hhhhhhhhhhhhhhhhhhhhh...eeeee...hhhhhhhhhhhhhhhh..eeeeehhhhhhhhhhhhhhhhhhh..eeeee...hhhhhh....eehhhhhhhhhhhhh..eee...........hhhhhhhhhhhhhh.ee...........ee.......eeeee...hhhhhhhhhhhhh...eee.hhhhhh...hhhhhhhhhhhhhhhhhhh.hhhhhh..hhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3kdn I   9 YDYYVDKGYEPSKKRDIIAVFRVTPAEGYTIEQAAGAVAAESSTGTWTTLYPWYEQERWADLSAKAYDFHDMGDGSWIVRIAYPFHAFEEANLPGLLASIAGNIFGMKRVKGLRLEDLYFPEKLIREFDGPAFGIEGVRKMLEIKDRPIYGVVPKPKVGYSPEEFEKLAYDLLSNGADYMkDDENLTSPWYNRFEERAEIMAKIIDKVENETGEKKTWFANITADLLEMEQRLEVLADLGLKHAMVDVVITGWGALRYIRDLAADYGLAIHGHRAMHAAFTRNPYHGISMFVLAKLYRLIGIDQLHVGTAGAGKLEGERDITIQNARILRESHYKPDENDVFHLEQKFYSIKAAFPTSSGGLHPGNIQPVIEALGTDIVLQLGGGTLGHPDGPAAGARAVRQAIDAIMQGIPLDEYAKTHKELARALEKWGHVTPV 444
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188|      198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438      
                                                                                                                                                                                                              189-KCX                                                                                                                                                                                                                                                           


Chain J from PDB  Type:PROTEIN  Length:437
 aligned with RBL_THEKO | O93627 from UniProtKB/Swiss-Prot  Length:444

    Alignment length:437
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       
            RBL_THEKO     8 IYDYYVDKGYEPSKKRDIIAVFRVTPAEGYTIEQAAGAVAAESSTGTWTTLYPWYEQERWADLSAKAYDFHDMGDGSWIVRIAYPFHAFEEANLPGLLASIAGNIFGMKRVKGLRLEDLYFPEKLIREFDGPAFGIEGVRKMLEIKDRPIYGVVPKPKVGYSPEEFEKLAYDLLSNGADYMKDDENLTSPWYNRFEERAEIMAKIIDKVENETGEKKTWFANITADLLEMEQRLEVLADLGLKHAMVDVVITGWGALRYIRDLAADYGLAIHGHRAMHAAFTRNPYHGISMFVLAKLYRLIGIDQLHVGTAGAGKLEGGKWDVIQNARILRESHYKPDENDVFHLEQKFYSIKAAFPTSSGGLHPGNIQPVIEALGTDIVLQLGGGTLGHPDGPAAGARAVRQAIDAIMQGIPLDEYAKTHKELARALEKWGHVTPV 444
               SCOP domains d3kdnj1 J:8-135 automated matches                                                                                               d3kdnj2 J:136-444 automated matches                                                                                                                                                                                                                                                                                   SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhh..........eeeeeeeeee....hhhhhhhhhhhhh............hhhhhhhhh.eeeeeee.....eeeeeeee.hhh...hhhhhhhhhhhhhhhh..eeeeeeeeee.hhhhhh......hhhhhhhhhhh.....eeee........hhhhhhhhhhhhhhh...eee...........hhhhhhhhhhhhhhhhhhhhh...eeeee...hhhhhhhhhhhhhhh...eeeeehhhhhhhhhhhhhhhhhhh..eeeee...hhhhhh....eehhhhhhhhhhhhh..eee...........hhhhhhhhhhhhhh.ee...........ee.......eeeee......hhhhhhhhhh...eee.hhhhhh...hhhhhhhhhhhhhhhhhh..hhhhhhh.hhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3kdn J   8 IYDYYVDKGYEPSKKRDIIAVFRVTPAEGYTIEQAAGAVAAESSTGTWTTLYPWYEQERWADLSAKAYDFHDMGDGSWIVRIAYPFHAFEEANLPGLLASIAGNIFGMKRVKGLRLEDLYFPEKLIREFDGPAFGIEGVRKMLEIKDRPIYGVVPKPKVGYSPEEFEKLAYDLLSNGADYMkDDENLTSPWYNRFEERAEIMAKIIDKVENETGEKKTWFANITADLLEMEQRLEVLADLGLKHAMVDVVITGWGALRYIRDLAADYGLAIHGHRAMHAAFTRNPYHGISMFVLAKLYRLIGIDQLHVGTAGAGKLEGERDITIQNARILRESHYKPDENDVFHLEQKFYSIKAAFPTSSGGLHPGNIQPVIEALGTDIVLQLGGGTLGHPDGPAAGARAVRQAIDAIMQGIPLDEYAKTHKELARALEKWGHVTPV 444
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187 |     197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       
                                                                                                                                                                                                               189-KCX
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 20)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)
(-)
Class: Alpha and beta proteins (a/b) (23833)
(-)
Fold: TIM beta/alpha-barrel (3956)
(-)
Superfamily: RuBisCo, C-terminal domain (66)
(-)
Family: automated matches (10)
(-)
Protein domain: automated matches (10)
(-)
Thermococcus kodakaraensis [TaxId: 69014] (2)
2ad3kdna2A:136-444
2bd3kdnb2B:136-444
2cd3kdnc2C:136-444
2dd3kdnd2D:136-444
2ed3kdne2E:136-444
2fd3kdnf2F:136-444
2gd3kdng2G:136-444
2hd3kdnh2H:136-444
2id3kdni2I:136-444
2jd3kdnj2J:136-444

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3KDN)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3KDN)

(-) Gene Ontology  (8, 8)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H,I,J   (RBL_THEKO | O93627)
molecular function
    GO:0016829    lyase activity    Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring.
    GO:0000287    magnesium ion binding    Interacting selectively and non-covalently with magnesium (Mg) ions.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0016984    ribulose-bisphosphate carboxylase activity    Catalysis of the reaction: D-ribulose 1,5-bisphosphate + CO2 + H2O = 2 3-phospho-D-glycerate.
biological process
    GO:0006196    AMP catabolic process    The chemical reactions and pathways resulting in the breakdown of AMP, adenosine monophosphate.
    GO:0015977    carbon fixation    A metabolic process in which carbon (usually derived from carbon dioxide) is incorporated into organic compounds (usually carbohydrates).
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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        RBL_THEKO | O93627: 1geh 3a12 3a13 3kdo 3wqp

(-) Related Entries Specified in the PDB File

1geh THE APO-FORM ABOUT THE SAME ENZYME
3a12
3a13
3kbo