3KBO - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Title :   2.14 ANGSTROM CRYSTAL STRUCTURE OF PUTATIVE OXIDOREDUCTASE (YCDW) FROM SALMONELLA TYPHIMURIUM IN COMPLEX WITH NADP

Authors :   G. Minasov, Z. Wawrzak, T. Skarina, O. Onopriyenko, L. Papazisi, A. Sav W. F. Anderson, Center For Structural Genomics Of Infectious (Csgid)

Date :   20 Oct 09 (Deposition) - 27 Oct 09 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.14

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A,D  (1x)
Biol. Unit 2: B,C  (1x)

Keywords :   Nadp, Nad, Structural Genomics, Center For Structural Genomics Of Infectious Diseases, Csgid, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   G. Minasov, Z. Wawrzak, T. Skarina, O. Onopriyenko, L. Papazisi, A. Savchenko, W. F. Anderson, Center For Structural Genomics Of Infectious Diseases (Csgid)
2. 14 Angstrom Crystal Structure Of Putative Oxidoreductase (Ycdw) From Salmonella Typhimurium In Complex With Nadp.
To Be Published
PubMed: search

Molecule 1 - GLYOXYLATE/HYDROXYPYRUVATE REDUCTASE A
	Chains	:	A, B, C, D
	EC Number	:	1.1.1.79, 1.1.1.81
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PMCSG7
	Expression System Strain	:	BL21-DE3
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	GHRA, STM1135, YCDW
	Organism Scientific	:	SALMONELLA ENTERICA SUBSP. ENTERICA SEROVAR TYPHIMURIUM
	Organism Taxid	:	90371
	Strain	:	LT2
	Synonym	:	2-KETOACID REDUCTASE

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A			D
Biological Unit 2 (1x)	:		B	C

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (5, 47)

No.	Name	Count	Type	Full Name
1	CL	8	Ligand/Ion	CHLORIDE ION
2	EPE	2	Ligand/Ion	4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
3	MSE	32	Mod. Amino Acid	SELENOMETHIONINE
4	NDB	1	Ligand/Ion	N-(2-HYDROXYETHYL)-N,N-DIMETHYL-3-SULFOPROPAN-1-AMINIUM
5	NDP	4	Ligand/Ion	NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE

Biological Unit 1 (4, 20)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	EPE	1	Ligand/Ion	4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
3	MSE	16	Mod. Amino Acid	SELENOMETHIONINE
4	NDB	1	Ligand/Ion	N-(2-HYDROXYETHYL)-N,N-DIMETHYL-3-SULFOPROPAN-1-AMINIUM
5	NDP	2	Ligand/Ion	NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE

Biological Unit 2 (3, 19)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	EPE	1	Ligand/Ion	4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
3	MSE	16	Mod. Amino Acid	SELENOMETHIONINE
4	NDB	-1	Ligand/Ion	N-(2-HYDROXYETHYL)-N,N-DIMETHYL-3-SULFOPROPAN-1-AMINIUM
5	NDP	2	Ligand/Ion	NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE

Asymmetric Unit (15, 15)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ARG A:89 , MSE A:99 , GLY A:143 , ALA A:144 , GLY A:145 , VAL A:146 , LEU A:147 , TRP A:165 , SER A:166 , ARG A:167 , SER A:168 , LYS A:170 , LEU A:197 , LEU A:198 , PRO A:199 , LEU A:225 , ALA A:226 , ARG A:227 , ASP A:251 , VAL A:252 , HIS A:275 , ALA A:278 , ARG A:310 , TYR A:312 , CL A:315 , HOH A:317 , HOH A:333 , HOH A:336 , HOH A:344 , HOH A:358 , HOH A:375 , HOH A:387 , HOH A:446 , HOH A:467 , HOH A:539	BINDING SITE FOR RESIDUE NDP A 313
02	AC2	SOFTWARE	ASN A:36 , PRO A:38 , GLU A:50 , MSE A:51 , ALA A:53 , ARG A:55 , ARG A:56 , HOH A:323 , HOH A:343 , HOH A:499 , HOH A:546 , ASN C:36 , GLU C:50 , ALA C:53	BINDING SITE FOR RESIDUE NDB A 314
03	AC3	SOFTWARE	TRP A:45 , GLY A:66 , ARG A:227 , NDP A:313	BINDING SITE FOR RESIDUE CL A 315
04	AC4	SOFTWARE	ASN A:11 , HOH A:369	BINDING SITE FOR RESIDUE CL A 316
05	AC5	SOFTWARE	ARG B:89 , MSE B:99 , GLY B:143 , ALA B:144 , GLY B:145 , VAL B:146 , LEU B:147 , TRP B:165 , SER B:166 , ARG B:167 , SER B:168 , LYS B:170 , LEU B:197 , LEU B:198 , PRO B:199 , THR B:204 , LEU B:225 , ALA B:226 , ARG B:227 , ASP B:251 , VAL B:252 , HIS B:275 , ALA B:277 , ALA B:278 , TYR B:312 , CL B:315 , HOH B:324 , HOH B:333 , HOH B:380 , HOH B:395 , HOH B:430 , HOH B:438 , HOH B:488 , HOH B:489	BINDING SITE FOR RESIDUE NDP B 313
06	AC6	SOFTWARE	GLN B:100 , SER B:154 , TRP B:158 , HOH B:547 , HOH B:554 , GLN C:100 , ALA C:157	BINDING SITE FOR RESIDUE EPE B 314
07	AC7	SOFTWARE	TRP B:45 , GLY B:66 , ARG B:227 , NDP B:313 , HOH B:375	BINDING SITE FOR RESIDUE CL B 315
08	AC8	SOFTWARE	PHE B:10 , ASN B:11 , TRP B:15 , HOH B:542	BINDING SITE FOR RESIDUE CL B 316
09	AC9	SOFTWARE	ARG C:89 , MSE C:99 , GLY C:143 , ALA C:144 , GLY C:145 , VAL C:146 , LEU C:147 , TRP C:165 , SER C:166 , ARG C:167 , SER C:168 , LYS C:170 , LEU C:197 , LEU C:198 , PRO C:199 , LEU C:225 , ALA C:226 , ARG C:227 , ASP C:251 , HIS C:275 , ALA C:277 , ALA C:278 , TYR C:312 , HOH C:326 , HOH C:330 , HOH C:371 , HOH C:375 , HOH C:395 , HOH C:421 , HOH C:443 , HOH C:448 , HOH C:454	BINDING SITE FOR RESIDUE NDP C 313
10	BC1	SOFTWARE	ARG A:56 , ARG C:56 , HOH C:379	BINDING SITE FOR RESIDUE CL C 314
11	BC2	SOFTWARE	ASN C:11 , TRP C:15 , HOH C:323	BINDING SITE FOR RESIDUE CL C 315
12	BC3	SOFTWARE	ALA D:65 , ARG D:89 , MSE D:99 , GLY D:143 , ALA D:144 , GLY D:145 , VAL D:146 , LEU D:147 , TRP D:165 , SER D:166 , ARG D:167 , SER D:168 , LYS D:170 , LEU D:197 , LEU D:198 , PRO D:199 , THR D:204 , LEU D:225 , ALA D:226 , ARG D:227 , ASP D:251 , VAL D:252 , HIS D:275 , ALA D:277 , ALA D:278 , TYR D:312 , CL D:315 , HOH D:325 , HOH D:334 , HOH D:360 , HOH D:362 , HOH D:386 , HOH D:418 , HOH D:483 , HOH D:508	BINDING SITE FOR RESIDUE NDP D 313
13	BC4	SOFTWARE	GLN D:100 , SER D:154 , TRP D:158	BINDING SITE FOR RESIDUE EPE D 314
14	BC5	SOFTWARE	ALA D:65 , GLY D:66 , NDP D:313 , HOH D:379	BINDING SITE FOR RESIDUE CL D 315
15	BC6	SOFTWARE	PHE D:10 , ASN D:11 , TRP D:15	BINDING SITE FOR RESIDUE CL D 316

(no "SS Bond" information available for 3KBO)

Asymmetric Unit

No.	Residues
1	Glu A:256	-	Pro A:257
2	Glu B:256	-	Pro B:257
3	Glu C:256	-	Pro C:257
4	Thr C:303	-	Gly C:304
5	Glu D:256	-	Pro D:257

(no "SAP(SNP)/Variant" information available for 3KBO)

(no "PROSITE Motif" information available for 3KBO)

(no "Exon" information available for 3KBO)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:312
 aligned with GHRA_SALTY | Q8ZQ30 from UniProtKB/Swiss-Prot  Length:312

    Alignment length:312
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310  
           GHRA_SALTY     1 MEIIFYHPTFNAAWWVNALEKALPHARVREWKVGDNNPADYALVWQPPVEMLAGRRLKAVFVLGAGVDAILSKLNAHPEMLDASIPLFRLEDTGMGLQMQEYAVSQVLHWFRRFDDYQALKNQALWKPLPEYTREEFSVGIMGAGVLGAKVAESLQAWGFPLRCWSRSRKSWPGVESYVGREELRAFLNQTRVLINLLPNTAQTVGIINSELLDQLPDGAYVLNLARGVHVQEADLLAALDSGKLKGAMLDVFSQEPLPQESPLWRHPRVAMTPHIAAVTRPAEAIDYISRTITQLEKGEPVTGQVDRARGY 312
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeee....hhhhhhhhhhhhh...eeee..........eeee...hhhhhh.....eeee....hhhhhh....hhhhh.....ee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..........hhhhh.eeee..hhhhhhhhhhhhh....eeeee........eeeee...hhhhhhhh..eeee............hhhhhh.....eeeee..hhhhhhhhhhhhhhhhh.eeeeee...........hhhhhh..eee........hhhhhhhhhhhhhhhhhh.............. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3kbo A   1 mEIIFYHPTFNAAWWVNALEKALPHARVREWKVGDNNPADYALVWQPPVEmLAGRRLKAVFVLGAGVDAILSKLNAHPEmLDASIPLFRLEDTGmGLQmQEYAVSQVLHWFRRFDDYQALKNQALWKPLPEYTREEFSVGImGAGVLGAKVAESLQAWGFPLRCWSRSRKSWPGVESYVGREELRAFLNQTRVLINLLPNTAQTVGIINSELLDQLPDGAYVLNLARGVHVQEADLLAALDSGKLKGAmLDVFSQEPLPQESPLWRHPRVAmTPHIAAVTRPAEAIDYISRTITQLEKGEPVTGQVDRARGY 312
                            |       10        20        30        40        50|       60        70        80        90    |  100       110       120       130       140 |     150       160       170       180       190       200       210       220       230       240       250       260       270 |     280       290       300       310  
                            |                                                51-MSE                       80-MSE         95-MSE                                        142-MSE                                                                                                    249-MSE                272-MSE                                    
                            1-MSE                                                                                            99-MSE

Chain B from PDB  Type:PROTEIN  Length:312
 aligned with GHRA_SALTY | Q8ZQ30 from UniProtKB/Swiss-Prot  Length:312

    Alignment length:312
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310  
           GHRA_SALTY     1 MEIIFYHPTFNAAWWVNALEKALPHARVREWKVGDNNPADYALVWQPPVEMLAGRRLKAVFVLGAGVDAILSKLNAHPEMLDASIPLFRLEDTGMGLQMQEYAVSQVLHWFRRFDDYQALKNQALWKPLPEYTREEFSVGIMGAGVLGAKVAESLQAWGFPLRCWSRSRKSWPGVESYVGREELRAFLNQTRVLINLLPNTAQTVGIINSELLDQLPDGAYVLNLARGVHVQEADLLAALDSGKLKGAMLDVFSQEPLPQESPLWRHPRVAMTPHIAAVTRPAEAIDYISRTITQLEKGEPVTGQVDRARGY 312
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeee....hhhhhhhhhhhhh...eeee..........eeee...hhhhhh.....eeee....hhhhhhhhhhh.........ee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh................eeee..hhhhhhhhhhhhh....eeeee........eeeee...hhhhhhhh..eeee............hhhhhhh....eeeee..hhhhhhhhhhhhhhhhh.eeeeee...................eee........hhhhhhhhhhhhhhhhhh......ee...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3kbo B   1 mEIIFYHPTFNAAWWVNALEKALPHARVREWKVGDNNPADYALVWQPPVEmLAGRRLKAVFVLGAGVDAILSKLNAHPEmLDASIPLFRLEDTGmGLQmQEYAVSQVLHWFRRFDDYQALKNQALWKPLPEYTREEFSVGImGAGVLGAKVAESLQAWGFPLRCWSRSRKSWPGVESYVGREELRAFLNQTRVLINLLPNTAQTVGIINSELLDQLPDGAYVLNLARGVHVQEADLLAALDSGKLKGAmLDVFSQEPLPQESPLWRHPRVAmTPHIAAVTRPAEAIDYISRTITQLEKGEPVTGQVDRARGY 312
                            |       10        20        30        40        50|       60        70        80        90    |  100       110       120       130       140 |     150       160       170       180       190       200       210       220       230       240       250       260       270 |     280       290       300       310  
                            1-MSE                                            51-MSE                       80-MSE         95-MSE                                        142-MSE                                                                                                    249-MSE                272-MSE                                    
                                                                                                                             99-MSE

Chain C from PDB  Type:PROTEIN  Length:312
 aligned with GHRA_SALTY | Q8ZQ30 from UniProtKB/Swiss-Prot  Length:312

    Alignment length:312
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310  
           GHRA_SALTY     1 MEIIFYHPTFNAAWWVNALEKALPHARVREWKVGDNNPADYALVWQPPVEMLAGRRLKAVFVLGAGVDAILSKLNAHPEMLDASIPLFRLEDTGMGLQMQEYAVSQVLHWFRRFDDYQALKNQALWKPLPEYTREEFSVGIMGAGVLGAKVAESLQAWGFPLRCWSRSRKSWPGVESYVGREELRAFLNQTRVLINLLPNTAQTVGIINSELLDQLPDGAYVLNLARGVHVQEADLLAALDSGKLKGAMLDVFSQEPLPQESPLWRHPRVAMTPHIAAVTRPAEAIDYISRTITQLEKGEPVTGQVDRARGY 312
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeee.....hhhhhhhhhhhhh...eeee..........eeee...hhhhhh.....eeee....hhhhhhhhhhhhhhh.....ee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..........hhhhh.eeee..hhhhhhhhhhhhh....eeeee........eeeee...hhhhhhhh..eeee............hhhhhh.....eeeee..hhhhhhhhhhhhhhhhh.eeeeee...................eee........hhhhhhhhhhhhhhhhhhh............. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3kbo C   1 mEIIFYHPTFNAAWWVNALEKALPHARVREWKVGDNNPADYALVWQPPVEmLAGRRLKAVFVLGAGVDAILSKLNAHPEmLDASIPLFRLEDTGmGLQmQEYAVSQVLHWFRRFDDYQALKNQALWKPLPEYTREEFSVGImGAGVLGAKVAESLQAWGFPLRCWSRSRKSWPGVESYVGREELRAFLNQTRVLINLLPNTAQTVGIINSELLDQLPDGAYVLNLARGVHVQEADLLAALDSGKLKGAmLDVFSQEPLPQESPLWRHPRVAmTPHIAAVTRPAEAIDYISRTITQLEKGEPVTGQVDRARGY 312
                            |       10        20        30        40        50|       60        70        80        90    |  100       110       120       130       140 |     150       160       170       180       190       200       210       220       230       240       250       260       270 |     280       290       300       310  
                            1-MSE                                            51-MSE                       80-MSE         95-MSE                                        142-MSE                                                                                                    249-MSE                272-MSE                                    
                                                                                                                             99-MSE

Chain D from PDB  Type:PROTEIN  Length:312
 aligned with GHRA_SALTY | Q8ZQ30 from UniProtKB/Swiss-Prot  Length:312

    Alignment length:312
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310  
           GHRA_SALTY     1 MEIIFYHPTFNAAWWVNALEKALPHARVREWKVGDNNPADYALVWQPPVEMLAGRRLKAVFVLGAGVDAILSKLNAHPEMLDASIPLFRLEDTGMGLQMQEYAVSQVLHWFRRFDDYQALKNQALWKPLPEYTREEFSVGIMGAGVLGAKVAESLQAWGFPLRCWSRSRKSWPGVESYVGREELRAFLNQTRVLINLLPNTAQTVGIINSELLDQLPDGAYVLNLARGVHVQEADLLAALDSGKLKGAMLDVFSQEPLPQESPLWRHPRVAMTPHIAAVTRPAEAIDYISRTITQLEKGEPVTGQVDRARGY 312
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
           Pfam domains (1) -------------------------------------------------------------------------------------------------------2-Hacid_dh_C-3kboD01 D:104-277                                                                                                                                                ----------------------------------- Pfam domains (1)
           Pfam domains (2) -------------------------------------------------------------------------------------------------------2-Hacid_dh_C-3kboD02 D:104-277                                                                                                                                                ----------------------------------- Pfam domains (2)
           Pfam domains (3) -------------------------------------------------------------------------------------------------------2-Hacid_dh_C-3kboD03 D:104-277                                                                                                                                                ----------------------------------- Pfam domains (3)
           Pfam domains (4) -------------------------------------------------------------------------------------------------------2-Hacid_dh_C-3kboD04 D:104-277                                                                                                                                                ----------------------------------- Pfam domains (4)
         Sec.struct. author .eeee.....hhhhhhhhhhhhh...eeee..........eeee...hhhhhh.....eeee....hhhhhhhhhhh.........ee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..............eeee..hhhhhhhhhhhhh....eeeee.........eeeehhhhhhhhhhh..eeee............hhhhhhh....eeeee..hhhhhhhhhhhhhhhh..eeeeee...........hhhhh...eee........hhhhhhhhhhhhhhhhhh.............. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3kbo D   1 mEIIFYHPTFNAAWWVNALEKALPHARVREWKVGDNNPADYALVWQPPVEmLAGRRLKAVFVLGAGVDAILSKLNAHPEmLDASIPLFRLEDTGmGLQmQEYAVSQVLHWFRRFDDYQALKNQALWKPLPEYTREEFSVGImGAGVLGAKVAESLQAWGFPLRCWSRSRKSWPGVESYVGREELRAFLNQTRVLINLLPNTAQTVGIINSELLDQLPDGAYVLNLARGVHVQEADLLAALDSGKLKGAmLDVFSQEPLPQESPLWRHPRVAmTPHIAAVTRPAEAIDYISRTITQLEKGEPVTGQVDRARGY 312
                            |       10        20        30        40        50|       60        70        80        90    |  100       110       120       130       140 |     150       160       170       180       190       200       210       220       230       240       250       260       270 |     280       290       300       310  
                            1-MSE                                            51-MSE                       80-MSE         95-MSE                                        142-MSE                                                                                                    249-MSE                272-MSE                                    
                                                                                                                             99-MSE

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 3KBO)

(no "CATH Domain" information available for 3KBO)

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: NADP_Rossmann (1239)

Family: 2-Hacid_dh_C (23)

Salmonella typhimurium (2)

1a	2-Hacid_dh_C-3kboD01	D:104-277
1b	2-Hacid_dh_C-3kboD02	D:104-277
1c	2-Hacid_dh_C-3kboD03	D:104-277
1d	2-Hacid_dh_C-3kboD04	D:104-277

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D (GHRA_SALTY | Q8ZQ30)

molecular function
	GO:0051287	NAD binding	Interacting selectively and non-covalently with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD+, or the reduced form, NADH.
	GO:0030267	glyoxylate reductase (NADP) activity	Catalysis of the reaction: glycolate + NADP+ = glyoxylate + NADPH + H+.
	GO:0016618	hydroxypyruvate reductase activity	Catalysis of the reaction: D-glycerate + NADP+ = hydroxypyruvate + NADPH + H+.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0005829	cytosol	The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
	GO:0005886	plasma membrane	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

Asymmetric Unit
	Complete Structure
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	Ligands, Modified Residues, Ions
		CL	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		EPE	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
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	Cis Peptide Bonds
		Glu A:256 - Pro A:257	[ RasMol ]
		Glu B:256 - Pro B:257	[ RasMol ]
		Glu C:256 - Pro C:257	[ RasMol ]
		Glu D:256 - Pro D:257	[ RasMol ]
		Thr C:303 - Gly C:304	[ RasMol ]

Biological Units
	Complete Structure
		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]

Jmol
	protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick [ Asym. Unit PNG format \| Asym. Unit - sites PNG format \| Biol. Unit 1 PNG format \| Biol. Unit 1 - sites PNG format \| Biol. Unit 2 PNG format ](automatic orientation, automatically generated)
Molscript
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Access by PDB/NDB ID
	3kbo
		Family and Domain Information	:	ProDom \| SYSTERS
		General Structural Information	:	GlycoscienceDB \| MMDB \| NDB \| OCA \| PDB \| PDBe \| PDBj \| PDBsum \| PDBWiki \| PQS \| PROTEOPEDIA
		Orientation in Membranes	:	OPM
		Protein Surface	:	SURFACE
		Secondary Structure	:	DSSP (structure derived) \| HSSP (homology derived)
		Structural Genomics	:	GeneCensus
		Structural Neighbours	:	CE \| VAST
		Structure Classification	:	CATH \| Dali \| SCOP
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	1.1.1.79
		General Enzyme Information	:	BRENDA \| EC-PDB \| Enzyme \| IntEnz
		Pathway	:	KEGG \| MetaCyc
	1.1.1.81
		General Enzyme Information	:	BRENDA \| EC-PDB \| Enzyme \| IntEnz
		Pathway	:	KEGG \| MetaCyc

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	GHRA_SALTY \| Q8ZQ30	:	3pp8

(no "Related Entries Specified in the PDB File" available for 3KBO)

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (5, 47)

Sites (15, 15)

SS Bonds (0, 0)

Cis Peptide Bonds (5, 5)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (1, 4)

Gene Ontology (8, 8)

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Still Images

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Databases

Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File