Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asymmetric Unit
(-)Asym. Unit - sites
(-)Biological Unit 1
(-)Biol. Unit 1 - sites
(-)Biological Unit 2
collapse expand < >
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Asym. Unit - sites
Asym. Unit - sites  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biol. Unit 1 - sites
Biol. Unit 1 - sites  (Jmol Viewer)
Image Biological Unit 2
Biological Unit 2  (Jmol Viewer)

(-) Description

Title :  CRYSTAL STRUCTURE OF TYPE III RUBISCO SP4 MUTANT COMPLEXED WITH 2-CABP AND ACTIVATED WITH CA
 
Authors :  Y. Nishitani, M. Fujihashi, T. Doi, S. Yoshida, H. Atomi, T. Imanaka, K. Miki
Date :  25 Mar 09  (Deposition) - 07 Apr 10  (Release) - 07 Apr 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.34
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J
Biol. Unit 1:  A,B,C,D,E  (2x)
Biol. Unit 2:  F,G,H,I,J  (2x)
Keywords :  Ribulose-1, 2-Bisphosphate Carboxylase/Oxygenase, Rubisco, Lyase, Carbon Dioxide Fixation, Magnesium, Metal-Binding, Monooxygenase, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Nishitani, M. Fujihashi, T. Doi, S. Yoshida, H. Atomi, T. Imanaka, K. Miki
Sturcture-Based Optimization Of A Type Iii Rubisco From A Hyperthermophile
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - RIBULOSE BISPHOSPHATE CARBOXYLASE
    Chains: A, B, C, D, E, F, G, H, I, J
    EC Number: 4.1.1.39
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET-21A(+)
    Expression System Strain: ROSETTA2(DE3)PLYSS
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: RBCL, TK2290
    Mutation: YES
    Organism Common: THERMOCOCCUS KODAKARAENSIS
    Organism Scientific: PYROCOCCUS KODAKARAENSIS
    Organism Taxid: 69014
    Strain: KOD1
    Synonym: RUBISCO

 Structural Features

(-) Chains, Units

  12345678910
Asymmetric Unit : ABCDEFGHIJ
Biological Unit 1 (2x): ABCDE     
Biological Unit 2 (2x):      FGHIJ

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 30)

Asymmetric Unit (4, 30)
No.NameCountTypeFull Name
1CA2Ligand/IonCALCIUM ION
2CAP10Ligand/Ion2-CARBOXYARABINITOL-1,5-DIPHOSPHATE
3KCX10Mod. Amino AcidLYSINE NZ-CARBOXYLIC ACID
4MG8Ligand/IonMAGNESIUM ION
Biological Unit 1 (2, 20)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2CAP10Ligand/Ion2-CARBOXYARABINITOL-1,5-DIPHOSPHATE
3KCX10Mod. Amino AcidLYSINE NZ-CARBOXYLIC ACID
4MG-1Ligand/IonMAGNESIUM ION
Biological Unit 2 (2, 20)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2CAP10Ligand/Ion2-CARBOXYARABINITOL-1,5-DIPHOSPHATE
3KCX10Mod. Amino AcidLYSINE NZ-CARBOXYLIC ACID
4MG-1Ligand/IonMAGNESIUM ION

(-) Sites  (20, 20)

Asymmetric Unit (20, 20)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREKCX A:189 , ASP A:191 , GLU A:192 , CAP A:446BINDING SITE FOR RESIDUE MG A 445
02AC2SOFTWARELYS A:163 , LYS A:165 , KCX A:189 , ASP A:191 , GLU A:192 , HIS A:281 , ARG A:282 , HIS A:314 , LYS A:322 , LEU A:323 , SER A:367 , GLY A:368 , GLY A:369 , GLN A:389 , GLY A:391 , GLY A:392 , MG A:445 , HOH A:508 , HOH A:523 , HOH A:528 , HOH A:529 , HOH A:535 , HOH A:554 , HOH A:584 , HOH A:625 , GLU C:49 , THR C:54 , TRP C:55 , ASN C:111BINDING SITE FOR RESIDUE CAP A 446
03AC3SOFTWAREASN B:111 , LYS B:163 , LYS B:165 , KCX B:189 , ASP B:191 , GLU B:192 , CAP B:446BINDING SITE FOR RESIDUE MG B 445
04AC4SOFTWAREGLU B:49 , TRP B:55 , ASN B:111 , LYS B:163 , LYS B:165 , KCX B:189 , ASP B:191 , GLU B:192 , HIS B:281 , ARG B:282 , HIS B:314 , LYS B:322 , LEU B:323 , SER B:367 , GLY B:368 , GLY B:369 , GLN B:389 , GLY B:391 , GLY B:392 , MG B:445 , HOH B:510 , HOH B:516 , HOH B:520 , HOH B:534 , HOH B:554 , HOH B:555 , HOH B:667BINDING SITE FOR RESIDUE CAP B 446
05AC5SOFTWARELYS C:163 , KCX C:189 , ASP C:191 , GLU C:192 , CAP C:446BINDING SITE FOR RESIDUE MG C 445
06AC6SOFTWAREGLU A:49 , TRP A:55 , ASN A:111 , LYS C:163 , LYS C:165 , KCX C:189 , GLU C:192 , HIS C:281 , ARG C:282 , HIS C:314 , LYS C:322 , LEU C:323 , SER C:367 , GLY C:368 , GLY C:369 , GLN C:389 , GLY C:391 , GLY C:392 , MG C:445 , HOH C:518 , HOH C:522 , HOH C:536 , HOH C:553 , HOH C:586 , HOH C:661BINDING SITE FOR RESIDUE CAP C 446
07AC7SOFTWAREKCX D:189 , ASP D:191 , GLU D:192 , CAP D:446BINDING SITE FOR RESIDUE MG D 445
08AC8SOFTWARELYS D:163 , LYS D:165 , KCX D:189 , ASP D:191 , GLU D:192 , HIS D:281 , ARG D:282 , HIS D:314 , LYS D:322 , SER D:367 , GLY D:368 , GLY D:369 , GLN D:389 , GLY D:391 , GLY D:392 , MG D:445 , HOH D:504 , HOH D:521 , HOH D:532 , HOH D:536 , HOH D:601 , HOH D:710 , GLU E:49 , THR E:54 , TRP E:55 , ASN E:111BINDING SITE FOR RESIDUE CAP D 446
09AC9SOFTWAREKCX E:189 , ASP E:191 , GLU E:192 , CAP E:446 , HOH E:666BINDING SITE FOR RESIDUE CA E 445
10BC1SOFTWARETRP D:55 , ASN D:111 , KCX E:189 , GLU E:192 , HIS E:281 , ARG E:282 , HIS E:314 , SER E:367 , GLY E:368 , GLY E:369 , GLN E:389 , LEU E:390 , GLY E:391 , GLY E:392 , CA E:445 , HOH E:528 , HOH E:535 , HOH E:556 , HOH E:577 , HOH E:627 , HOH E:666 , HOH E:687BINDING SITE FOR RESIDUE CAP E 446
11BC2SOFTWAREKCX F:189 , ASP F:191 , GLU F:192 , CAP F:446BINDING SITE FOR RESIDUE MG F 445
12BC3SOFTWARELYS F:163 , LYS F:165 , KCX F:189 , ASP F:191 , GLU F:192 , HIS F:281 , ARG F:282 , HIS F:314 , LYS F:322 , LEU F:323 , SER F:367 , GLY F:368 , GLY F:369 , GLN F:389 , GLY F:391 , GLY F:392 , MG F:445 , HOH F:520 , HOH F:524 , HOH F:528 , HOH F:541 , HOH F:562 , HOH F:570 , HOH F:623 , GLU H:49 , THR H:54 , TRP H:55 , ASN H:111BINDING SITE FOR RESIDUE CAP F 446
13BC4SOFTWARELYS G:163 , LYS G:165 , KCX G:189 , ASP G:191 , GLU G:192 , CAP G:446BINDING SITE FOR RESIDUE MG G 445
14BC5SOFTWAREGLU G:49 , TRP G:55 , ASN G:111 , LYS G:163 , LYS G:165 , KCX G:189 , ASP G:191 , GLU G:192 , HIS G:281 , ARG G:282 , HIS G:314 , LYS G:322 , LEU G:323 , SER G:367 , GLY G:368 , GLY G:369 , GLN G:389 , GLY G:391 , GLY G:392 , MG G:445 , HOH G:503 , HOH G:528 , HOH G:536 , HOH G:582 , HOH G:603 , HOH G:669 , HOH G:672BINDING SITE FOR RESIDUE CAP G 446
15BC6SOFTWARELYS H:165 , KCX H:189 , ASP H:191 , GLU H:192 , CAP H:446BINDING SITE FOR RESIDUE MG H 445
16BC7SOFTWARETRP F:55 , ASN F:111 , HOH F:519 , LYS H:163 , LYS H:165 , KCX H:189 , GLU H:192 , HIS H:281 , ARG H:282 , HIS H:314 , LYS H:322 , LEU H:323 , SER H:367 , GLY H:368 , GLY H:369 , GLN H:389 , GLY H:391 , GLY H:392 , MG H:445 , HOH H:535 , HOH H:543 , HOH H:607 , HOH H:652BINDING SITE FOR RESIDUE CAP H 446
17BC8SOFTWARELYS I:163 , KCX I:189 , ASP I:191 , GLU I:192 , CAP I:446BINDING SITE FOR RESIDUE MG I 445
18BC9SOFTWARELYS I:163 , LYS I:165 , KCX I:189 , ASP I:191 , GLU I:192 , HIS I:281 , ARG I:282 , HIS I:314 , LYS I:322 , LEU I:323 , SER I:367 , GLY I:368 , GLY I:369 , GLN I:389 , GLY I:391 , GLY I:392 , MG I:445 , HOH I:536 , HOH I:537 , HOH I:543 , HOH I:547 , HOH I:575 , HOH I:659 , HOH I:673 , GLU J:49 , THR J:54 , TRP J:55 , ASN J:111BINDING SITE FOR RESIDUE CAP I 446
19CC1SOFTWAREKCX J:189 , ASP J:191 , GLU J:192 , CAP J:446 , HOH J:678BINDING SITE FOR RESIDUE CA J 445
20CC2SOFTWARETRP I:55 , ASN I:111 , KCX J:189 , GLU J:192 , HIS J:281 , ARG J:282 , HIS J:314 , SER J:367 , GLY J:368 , GLY J:369 , GLN J:389 , LEU J:390 , GLY J:391 , GLY J:392 , CA J:445 , HOH J:526 , HOH J:538 , HOH J:547 , HOH J:549 , HOH J:586 , HOH J:604 , HOH J:678BINDING SITE FOR RESIDUE CAP J 446

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3A13)

(-) Cis Peptide Bonds  (10, 10)

Asymmetric Unit
No.Residues
1Lys A:163 -Pro A:164
2Lys B:163 -Pro B:164
3Lys C:163 -Pro C:164
4Lys D:163 -Pro D:164
5Lys E:163 -Pro E:164
6Lys F:163 -Pro F:164
7Lys G:163 -Pro G:164
8Lys H:163 -Pro H:164
9Lys I:163 -Pro I:164
10Lys J:163 -Pro J:164

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3A13)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3A13)

(-) Exons   (0, 0)

(no "Exon" information available for 3A13)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:436
 aligned with RBL_THEKO | O93627 from UniProtKB/Swiss-Prot  Length:444

    Alignment length:436
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438      
            RBL_THEKO     9 YDYYVDKGYEPSKKRDIIAVFRVTPAEGYTIEQAAGAVAAESSTGTWTTLYPWYEQERWADLSAKAYDFHDMGDGSWIVRIAYPFHAFEEANLPGLLASIAGNIFGMKRVKGLRLEDLYFPEKLIREFDGPAFGIEGVRKMLEIKDRPIYGVVPKPKVGYSPEEFEKLAYDLLSNGADYMKDDENLTSPWYNRFEERAEIMAKIIDKVENETGEKKTWFANITADLLEMEQRLEVLADLGLKHAMVDVVITGWGALRYIRDLAADYGLAIHGHRAMHAAFTRNPYHGISMFVLAKLYRLIGIDQLHVGTAGAGKLEGGKWDVIQNARILRESHYKPDENDVFHLEQKFYSIKAAFPTSSGGLHPGNIQPVIEALGTDIVLQLGGGTLGHPDGPAAGARAVRQAIDAIMQGIPLDEYAKTHKELARALEKWGHVTPV 444
               SCOP domains d3a13a1 A:9-135 automated matches                                                                                              d3a13a2 A:136-444 automated matches                                                                                                                                                                                                                                                                                   SCOP domains
               CATH domains 3a13A01 A:9-136  [code=3.30.70.150, no name defined]                                                                            3a13A02 A:137-438 Rubisco                                                                                                                                                                                                                                                                                     ------ CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhh..........eeeeeeeeee....hhhhhhhhhhhhh............hhhhhhhh..eeeeeee.....eeeeeeee.hhh...hhhhhhhhhhhhhhhh..eeeeeeeeee.hhhhhh......hhhhhhhhhhh.....eeee........hhhhhhhhhhhhhhh...eee...........hhhhhhhhhhhhhhhhhhhhh...eeeee...hhhhhhhhhhhhhhh...eeeeehhhhhhhhhhhhhhhhhhhh.eeeee...hhhhhh....eehhhhhhhhhhhhh..eee...........hhhhhhhhhhhhhh.ee...........ee.......eeeee...hhhhhhhhhhhhh...eee.hhhhhh...hhhhhhhhhhhhhhhhhh..hhhhhhh.hhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3a13 A   9 YDYYVDKGYEPSKKRDIIAVFRVTPAEGYTIEQAAGAVAAESSTGTWTTLYPWYEQERWADLSAKAYDFHDMGDGSWIVRIAYPFHAFEEANLPGLLASIAGNIFGMKRVKGLRLEDLYFPEKLIREFDGPAFGIEGVRKMLEIKDRPIYGVVPKPKVGYSPEEFEKLAYDLLSNGADYMkDDENLTSPWYNRFEERAEIMAKIIDKVENETGEKKTWFANITADLLEMEQRLEVLADLGLKHAMVDVVITGWGALRYIRDLAADYGLAIHGHRAMHAAFTRNPYHGISMFVLAKLYRLIGIDQLHVGTAGAGKLEGERDITIQNARILRESHYKPDENDVFHLEQKFYSIKAAFPTSSGGLHPGNIQPVIEALGTDIVLQLGGGTLGHPDGPAAGARAVRQAIDAIMQGIPLDEYAKTHKELARALEKWGHVTPV 444
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188|      198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438      
                                                                                                                                                                                                              189-KCX                                                                                                                                                                                                                                                           


Chain B from PDB  Type:PROTEIN  Length:437
 aligned with RBL_THEKO | O93627 from UniProtKB/Swiss-Prot  Length:444

    Alignment length:437
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       
            RBL_THEKO     8 IYDYYVDKGYEPSKKRDIIAVFRVTPAEGYTIEQAAGAVAAESSTGTWTTLYPWYEQERWADLSAKAYDFHDMGDGSWIVRIAYPFHAFEEANLPGLLASIAGNIFGMKRVKGLRLEDLYFPEKLIREFDGPAFGIEGVRKMLEIKDRPIYGVVPKPKVGYSPEEFEKLAYDLLSNGADYMKDDENLTSPWYNRFEERAEIMAKIIDKVENETGEKKTWFANITADLLEMEQRLEVLADLGLKHAMVDVVITGWGALRYIRDLAADYGLAIHGHRAMHAAFTRNPYHGISMFVLAKLYRLIGIDQLHVGTAGAGKLEGGKWDVIQNARILRESHYKPDENDVFHLEQKFYSIKAAFPTSSGGLHPGNIQPVIEALGTDIVLQLGGGTLGHPDGPAAGARAVRQAIDAIMQGIPLDEYAKTHKELARALEKWGHVTPV 444
               SCOP domains d3a13b1 B:8-135 automated matches                                                                                               d3a13b2 B:136-444 automated matches                                                                                                                                                                                                                                                                                   SCOP domains
               CATH domains 3a13B01 B:8-136  [code=3.30.70.150, no name defined]                                                                             3a13B02 B:137-438 Rubisco                                                                                                                                                                                                                                                                                     ------ CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhh..........eeeeeeeeee....hhhhhhhhhhhhh............hhhhhhhh..eeeeeee.....eeeeeeee.hhh...hhhhhhhhhhhhhhhh..eeeeeeeeee.hhhhhh......hhhhhhhhhhh.....eeee........hhhhhhhhhhhhhhh...eee...........hhhhhhhhhhhhhhhhhhhhh...eeeee...hhhhhhhhhhhhhhh...eeeeehhhhh..hhhhhhhhhhhhh.eeeee...hhhhhh....eehhhhhhhhhhhhh..eee...........hhhhhhhhhhhhhh.ee...........ee.......eeee........hhhhhhhhh...eee.hhhhhh..hhhhhhhhhhhhhhhhhhhh.hhhhhh..hhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3a13 B   8 IYDYYVDKGYEPSKKRDIIAVFRVTPAEGYTIEQAAGAVAAESSTGTWTTLYPWYEQERWADLSAKAYDFHDMGDGSWIVRIAYPFHAFEEANLPGLLASIAGNIFGMKRVKGLRLEDLYFPEKLIREFDGPAFGIEGVRKMLEIKDRPIYGVVPKPKVGYSPEEFEKLAYDLLSNGADYMkDDENLTSPWYNRFEERAEIMAKIIDKVENETGEKKTWFANITADLLEMEQRLEVLADLGLKHAMVDVVITGWGALRYIRDLAADYGLAIHGHRAMHAAFTRNPYHGISMFVLAKLYRLIGIDQLHVGTAGAGKLEGERDITIQNARILRESHYKPDENDVFHLEQKFYSIKAAFPTSSGGLHPGNIQPVIEALGTDIVLQLGGGTLGHPDGPAAGARAVRQAIDAIMQGIPLDEYAKTHKELARALEKWGHVTPV 444
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187 |     197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       
                                                                                                                                                                                                               189-KCX                                                                                                                                                                                                                                                           


Chain C from PDB  Type:PROTEIN  Length:437
 aligned with RBL_THEKO | O93627 from UniProtKB/Swiss-Prot  Length:444

    Alignment length:438
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436        
            RBL_THEKO     7 TIYDYYVDKGYEPSKKRDIIAVFRVTPAEGYTIEQAAGAVAAESSTGTWTTLYPWYEQERWADLSAKAYDFHDMGDGSWIVRIAYPFHAFEEANLPGLLASIAGNIFGMKRVKGLRLEDLYFPEKLIREFDGPAFGIEGVRKMLEIKDRPIYGVVPKPKVGYSPEEFEKLAYDLLSNGADYMKDDENLTSPWYNRFEERAEIMAKIIDKVENETGEKKTWFANITADLLEMEQRLEVLADLGLKHAMVDVVITGWGALRYIRDLAADYGLAIHGHRAMHAAFTRNPYHGISMFVLAKLYRLIGIDQLHVGTAGAGKLEGGKWDVIQNARILRESHYKPDENDVFHLEQKFYSIKAAFPTSSGGLHPGNIQPVIEALGTDIVLQLGGGTLGHPDGPAAGARAVRQAIDAIMQGIPLDEYAKTHKELARALEKWGHVTPV 444
               SCOP domains d3a13c1 C:7-135 automated matches                                                                                                d3a13c2 C:136-444 automated matches                                                                                                                                                                                                                                                                                   SCOP domains
               CATH domains 3a13C01 C:7-136  [code=3.30.70.150, no name defined]                                                                              3a13C02 C:137-438 Rubisco                                                                                                                                                                                                                                                                                     ------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhh..........eeeeeeeeee....hhhhhhhhhhhhh............hhhhhhhhh.eeeeeee.....eeeeeeee.hhh...hhhhhhhhhhhhhhhh..eeeeeeeeee.hhhhhh......hhhhhhhhhhh.....eeee........hhhhhhhhhhhhhhh...eee...........hhhhhhhhhhhhhhhhhhhhh...eeeee...hhhhhhhhhhhhhhh...eeeeehhhhhhhhhhhhhhhhhhh..eeeee...hhhhhh....eehhhhhhhhhhhhh..eee...........hhhhhhhhhhhhhh.ee...........ee.......eeeee.......hhhhhhhhh...eee.hhhhhh.-.hhhhhhhhhhhhhhhhh...hhhhhh..hhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3a13 C   7 TIYDYYVDKGYEPSKKRDIIAVFRVTPAEGYTIEQAAGAVAAESSTGTWTTLYPWYEQERWADLSAKAYDFHDMGDGSWIVRIAYPFHAFEEANLPGLLASIAGNIFGMKRVKGLRLEDLYFPEKLIREFDGPAFGIEGVRKMLEIKDRPIYGVVPKPKVGYSPEEFEKLAYDLLSNGADYMkDDENLTSPWYNRFEERAEIMAKIIDKVENETGEKKTWFANITADLLEMEQRLEVLADLGLKHAMVDVVITGWGALRYIRDLAADYGLAIHGHRAMHAAFTRNPYHGISMFVLAKLYRLIGIDQLHVGTAGAGKLEGERDITIQNARILRESHYKPDENDVFHLEQKFYSIKAAFPTSSGGLHPGNIQPVIEALGTDIVLQLGGGTLGH-DGPAAGARAVRQAIDAIMQGIPLDEYAKTHKELARALEKWGHVTPV 444
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186  |    196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396| |    406       416       426       436        
                                                                                                                                                                                                                189-KCX                                                                                                                                                                                                         397 |                                             
                                                                                                                                                                                                                                                                                                                                                                                                                                  399                                             


Chain D from PDB  Type:PROTEIN  Length:437
 aligned with RBL_THEKO | O93627 from UniProtKB/Swiss-Prot  Length:444

    Alignment length:440
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444
            RBL_THEKO     5 FDTIYDYYVDKGYEPSKKRDIIAVFRVTPAEGYTIEQAAGAVAAESSTGTWTTLYPWYEQERWADLSAKAYDFHDMGDGSWIVRIAYPFHAFEEANLPGLLASIAGNIFGMKRVKGLRLEDLYFPEKLIREFDGPAFGIEGVRKMLEIKDRPIYGVVPKPKVGYSPEEFEKLAYDLLSNGADYMKDDENLTSPWYNRFEERAEIMAKIIDKVENETGEKKTWFANITADLLEMEQRLEVLADLGLKHAMVDVVITGWGALRYIRDLAADYGLAIHGHRAMHAAFTRNPYHGISMFVLAKLYRLIGIDQLHVGTAGAGKLEGGKWDVIQNARILRESHYKPDENDVFHLEQKFYSIKAAFPTSSGGLHPGNIQPVIEALGTDIVLQLGGGTLGHPDGPAAGARAVRQAIDAIMQGIPLDEYAKTHKELARALEKWGHVTPV 444
               SCOP domains d3a13d1 D:5-135 automated matches                                                                                                  d3a13d2 D:136-444 automated matches                                                                                                                                                                                                                                                                                   SCOP domains
               CATH domains 3a13D01 D:5-136  [code=3.30.70.150, no name defin ed]                                                                               3a13D02 D:137-438 Rubisco                                                                                                                                                                                                                                                                                     ------ CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhh..........eeeeeeeeee....hhhhhhhhhhhhh...-...--...hhhhhhhh..eeeeeee.....eeeeeeee.hhh...hhhhhhhhhhhhhhhh..eeeeeeeeee.hhhhhh......hhhhhhhhhhh.....eeee........hhhhhhhhhhhhhhh...eee...........hhhhhhhhhhhhhhhhhhhhh...eeeee...hhhhhhhhhhhhhhh...eeeeehhhhhhhhhhhhhhhhhhhh.eeeee...hhhhhh....eehhhhhhhhhhhhh..eee...........hhhhhhhhhhhhhh.ee...........ee.......eeeee...hhhhhhhhhhhhh...eee..........hhhhhhhhhhhhhhhhhhh.hhhhhhh.hhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3a13 D   5 FDTIYDYYVDKGYEPSKKRDIIAVFRVTPAEGYTIEQAAGAVAAESSTG-WTT--PWYEQERWADLSAKAYDFHDMGDGSWIVRIAYPFHAFEEANLPGLLASIAGNIFGMKRVKGLRLEDLYFPEKLIREFDGPAFGIEGVRKMLEIKDRPIYGVVPKPKVGYSPEEFEKLAYDLLSNGADYMkDDENLTSPWYNRFEERAEIMAKIIDKVENETGEKKTWFANITADLLEMEQRLEVLADLGLKHAMVDVVITGWGALRYIRDLAADYGLAIHGHRAMHAAFTRNPYHGISMFVLAKLYRLIGIDQLHVGTAGAGKLEGERDITIQNARILRESHYKPDENDVFHLEQKFYSIKAAFPTSSGGLHPGNIQPVIEALGTDIVLQLGGGTLGHPDGPAAGARAVRQAIDAIMQGIPLDEYAKTHKELARALEKWGHVTPV 444
                                    14        24        34        44        |-| |  |  64        74        84        94       104       114       124       134       144       154       164       174       184    |  194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444
                                                                           53 | | 60                                                                                                                              189-KCX                                                                                                                                                                                                                                                           
                                                                             55 |                                                                                                                                                                                                                                                                                                                                                                                                   
                                                                               57                                                                                                                                                                                                                                                                                                                                                                                                   


Chain E from PDB  Type:PROTEIN  Length:432
 aligned with RBL_THEKO | O93627 from UniProtKB/Swiss-Prot  Length:444

    Alignment length:437
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       
            RBL_THEKO     8 IYDYYVDKGYEPSKKRDIIAVFRVTPAEGYTIEQAAGAVAAESSTGTWTTLYPWYEQERWADLSAKAYDFHDMGDGSWIVRIAYPFHAFEEANLPGLLASIAGNIFGMKRVKGLRLEDLYFPEKLIREFDGPAFGIEGVRKMLEIKDRPIYGVVPKPKVGYSPEEFEKLAYDLLSNGADYMKDDENLTSPWYNRFEERAEIMAKIIDKVENETGEKKTWFANITADLLEMEQRLEVLADLGLKHAMVDVVITGWGALRYIRDLAADYGLAIHGHRAMHAAFTRNPYHGISMFVLAKLYRLIGIDQLHVGTAGAGKLEGGKWDVIQNARILRESHYKPDENDVFHLEQKFYSIKAAFPTSSGGLHPGNIQPVIEALGTDIVLQLGGGTLGHPDGPAAGARAVRQAIDAIMQGIPLDEYAKTHKELARALEKWGHVTPV 444
               SCOP domains d3a13e1 E:8-135 automated matches                                                                                               d3a13e2 E:136-444 automated matches                                                                                                                                                                                                                                                                                   SCOP domains
               CATH domains 3a13E01 E:8-136  [code=3.30.70.150, no name defined]                                                                             3a13E02 E:137-438 Rubisco                                                                                                                                                                                                                                                                                     ------ CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhh..........eeeeeeeeee....hhhhhhhhhhhhh............hhhhhhhh..eeeeeee.....eeeeeeee.hhh...hhhhhhhhhhhhhhhh..eeeeeeeeee.hhhhhh......hhhhhhhhhh......eeee........hhhhhhhhhhhhhhh...eee...........hhhhhhhhhhhhhhhhhhhhh...eeeee...hhhhhhhhhhhhhhh...eeeeehhhhhhhhhhhhhhhhhhh..eeeee..hhhhh......eehhhhhhhhhhhhh..eee...----...-hhhhhhhhhhhhhh.ee...........ee.......eeeee......hhhhhhhhhh...eee.hhhhhh...hhhhhhhhhhhhhhhhhh..hhhhhhh.hhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3a13 E   8 IYDYYVDKGYEPSKKRDIIAVFRVTPAEGYTIEQAAGAVAAESSTGTWTTLYPWYEQERWADLSAKAYDFHDMGDGSWIVRIAYPFHAFEEANLPGLLASIAGNIFGMKRVKGLRLEDLYFPEKLIREFDGPAFGIEGVRKMLEIKDRPIYGVVPKPKVGYSPEEFEKLAYDLLSNGADYMkDDENLTSPWYNRFEERAEIMAKIIDKVENETGEKKTWFANITADLLEMEQRLEVLADLGLKHAMVDVVITGWGALRYIRDLAADYGLAIHGHRAMHAAFTRNPYHGISMFVLAKLYRLIGIDQLHVGT----KLE-ERDITIQNARILRESHYKPDENDVFHLEQKFYSIKAAFPTSSGGLHPGNIQPVIEALGTDIVLQLGGGTLGHPDGPAAGARAVRQAIDAIMQGIPLDEYAKTHKELARALEKWGHVTPV 444
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187 |     197       207       217       227       237       247       257       267       277       287       297       307       317    | |327       337       347       357       367       377       387       397       407       417       427       437       
                                                                                                                                                                                                               189-KCX                                                                                                                         317  322 | |                                                                                                                      
                                                                                                                                                                                                                                                                                                                                                      324 |                                                                                                                      
                                                                                                                                                                                                                                                                                                                                                        326                                                                                                                      


Chain F from PDB  Type:PROTEIN  Length:437
 aligned with RBL_THEKO | O93627 from UniProtKB/Swiss-Prot  Length:444

    Alignment length:437
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       
            RBL_THEKO     8 IYDYYVDKGYEPSKKRDIIAVFRVTPAEGYTIEQAAGAVAAESSTGTWTTLYPWYEQERWADLSAKAYDFHDMGDGSWIVRIAYPFHAFEEANLPGLLASIAGNIFGMKRVKGLRLEDLYFPEKLIREFDGPAFGIEGVRKMLEIKDRPIYGVVPKPKVGYSPEEFEKLAYDLLSNGADYMKDDENLTSPWYNRFEERAEIMAKIIDKVENETGEKKTWFANITADLLEMEQRLEVLADLGLKHAMVDVVITGWGALRYIRDLAADYGLAIHGHRAMHAAFTRNPYHGISMFVLAKLYRLIGIDQLHVGTAGAGKLEGGKWDVIQNARILRESHYKPDENDVFHLEQKFYSIKAAFPTSSGGLHPGNIQPVIEALGTDIVLQLGGGTLGHPDGPAAGARAVRQAIDAIMQGIPLDEYAKTHKELARALEKWGHVTPV 444
               SCOP domains d3a13f1 F:8-135 automated matches                                                                                               d3a13f2 F:136-444 automated matches                                                                                                                                                                                                                                                                                   SCOP domains
               CATH domains 3a13F01 F:8-136  [code=3.30.70.150, no name defined]                                                                             3a13F02 F:137-438 Rubisco                                                                                                                                                                                                                                                                                     ------ CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhh..........eeeeeeeeee....hhhhhhhhhhhhh............hhhhhhhhh.eeeeeee.....eeeeeeee.hhh...hhhhhhhhhhhhhhhh..eeeeeeeeee.hhhhhh......hhhhhhhhhhh.....eeee........hhhhhhhhhhhhhhh...eee...........hhhhhhhhhhhhhhhhhhhhh...eeeee...hhhhhhhhhhhhhhh...eeeeehhhhhhhhhhhhhhhhhhhh.eeeee...hhhhhh....eehhhhhhhhhhhhh..eee...........hhhhhhhhhhhhhh.ee...........ee.......eeeee.......hhhhhhhhh...eee.hhhhhh...hhhhhhhhhhhhhhhhh...hhhhhhh.hhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3a13 F   8 IYDYYVDKGYEPSKKRDIIAVFRVTPAEGYTIEQAAGAVAAESSTGTWTTLYPWYEQERWADLSAKAYDFHDMGDGSWIVRIAYPFHAFEEANLPGLLASIAGNIFGMKRVKGLRLEDLYFPEKLIREFDGPAFGIEGVRKMLEIKDRPIYGVVPKPKVGYSPEEFEKLAYDLLSNGADYMkDDENLTSPWYNRFEERAEIMAKIIDKVENETGEKKTWFANITADLLEMEQRLEVLADLGLKHAMVDVVITGWGALRYIRDLAADYGLAIHGHRAMHAAFTRNPYHGISMFVLAKLYRLIGIDQLHVGTAGAGKLEGERDITIQNARILRESHYKPDENDVFHLEQKFYSIKAAFPTSSGGLHPGNIQPVIEALGTDIVLQLGGGTLGHPDGPAAGARAVRQAIDAIMQGIPLDEYAKTHKELARALEKWGHVTPV 444
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187 |     197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       
                                                                                                                                                                                                               189-KCX                                                                                                                                                                                                                                                           


Chain G from PDB  Type:PROTEIN  Length:437
 aligned with RBL_THEKO | O93627 from UniProtKB/Swiss-Prot  Length:444

    Alignment length:437
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       
            RBL_THEKO     8 IYDYYVDKGYEPSKKRDIIAVFRVTPAEGYTIEQAAGAVAAESSTGTWTTLYPWYEQERWADLSAKAYDFHDMGDGSWIVRIAYPFHAFEEANLPGLLASIAGNIFGMKRVKGLRLEDLYFPEKLIREFDGPAFGIEGVRKMLEIKDRPIYGVVPKPKVGYSPEEFEKLAYDLLSNGADYMKDDENLTSPWYNRFEERAEIMAKIIDKVENETGEKKTWFANITADLLEMEQRLEVLADLGLKHAMVDVVITGWGALRYIRDLAADYGLAIHGHRAMHAAFTRNPYHGISMFVLAKLYRLIGIDQLHVGTAGAGKLEGGKWDVIQNARILRESHYKPDENDVFHLEQKFYSIKAAFPTSSGGLHPGNIQPVIEALGTDIVLQLGGGTLGHPDGPAAGARAVRQAIDAIMQGIPLDEYAKTHKELARALEKWGHVTPV 444
               SCOP domains d3a13g1 G:8-135 automated matches                                                                                               d3a13g2 G:136-444 automated matches                                                                                                                                                                                                                                                                                   SCOP domains
               CATH domains 3a13G01 G:8-136  [code=3.30.70.150, no name defined]                                                                             3a13G02 G:137-438 Rubisco                                                                                                                                                                                                                                                                                     ------ CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhh..........eeeeeeeeee....hhhhhhhhhhhhh............hhhhhhhh..eeeeeee.....eeeeeeee.hhh...hhhhhhhhhhhhhhhh..eeeeeeeeee.hhhhhh......hhhhhhhhhhh.....eeee........hhhhhhhhhhhhhhh...eee...........hhhhhhhhhhhhhhhhhhhhh...eeeee...hhhhhhhhhhhhhhh...eeeeehhhhhhhhhhhhhhhhhhhh.eeeee...hhhhhh....eehhhhhhhhhhhhh..eee...........hhhhhhhhhhhhhh.ee...........ee.......eeee........hhhhhhhhh...eee.hhhhhh...hhhhhhhhhhhhhhhhhhh.hhhhhhh.hhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3a13 G   8 IYDYYVDKGYEPSKKRDIIAVFRVTPAEGYTIEQAAGAVAAESSTGTWTTLYPWYEQERWADLSAKAYDFHDMGDGSWIVRIAYPFHAFEEANLPGLLASIAGNIFGMKRVKGLRLEDLYFPEKLIREFDGPAFGIEGVRKMLEIKDRPIYGVVPKPKVGYSPEEFEKLAYDLLSNGADYMkDDENLTSPWYNRFEERAEIMAKIIDKVENETGEKKTWFANITADLLEMEQRLEVLADLGLKHAMVDVVITGWGALRYIRDLAADYGLAIHGHRAMHAAFTRNPYHGISMFVLAKLYRLIGIDQLHVGTAGAGKLEGERDITIQNARILRESHYKPDENDVFHLEQKFYSIKAAFPTSSGGLHPGNIQPVIEALGTDIVLQLGGGTLGHPDGPAAGARAVRQAIDAIMQGIPLDEYAKTHKELARALEKWGHVTPV 444
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187 |     197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       
                                                                                                                                                                                                               189-KCX                                                                                                                                                                                                                                                           


Chain H from PDB  Type:PROTEIN  Length:438
 aligned with RBL_THEKO | O93627 from UniProtKB/Swiss-Prot  Length:444

    Alignment length:438
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436        
            RBL_THEKO     7 TIYDYYVDKGYEPSKKRDIIAVFRVTPAEGYTIEQAAGAVAAESSTGTWTTLYPWYEQERWADLSAKAYDFHDMGDGSWIVRIAYPFHAFEEANLPGLLASIAGNIFGMKRVKGLRLEDLYFPEKLIREFDGPAFGIEGVRKMLEIKDRPIYGVVPKPKVGYSPEEFEKLAYDLLSNGADYMKDDENLTSPWYNRFEERAEIMAKIIDKVENETGEKKTWFANITADLLEMEQRLEVLADLGLKHAMVDVVITGWGALRYIRDLAADYGLAIHGHRAMHAAFTRNPYHGISMFVLAKLYRLIGIDQLHVGTAGAGKLEGGKWDVIQNARILRESHYKPDENDVFHLEQKFYSIKAAFPTSSGGLHPGNIQPVIEALGTDIVLQLGGGTLGHPDGPAAGARAVRQAIDAIMQGIPLDEYAKTHKELARALEKWGHVTPV 444
               SCOP domains d3a13h1 H:7-135 automated matches                                                                                                d3a13h2 H:136-444 automated matches                                                                                                                                                                                                                                                                                   SCOP domains
               CATH domains 3a13H01 H:7-136  [code=3.30.70.150, no name defined]                                                                              3a13H02 H:137-438 Rubisco                                                                                                                                                                                                                                                                                     ------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhh..........eeeeeeeeee....hhhhhhhhhhhhh............hhhhhhhhh.eeeeeee.....eeeeeeee.hhh...hhhhhhhhhhhhhhhh..eeeeeeeeee.hhhhhh......hhhhhhhhhhh.....eeee........hhhhhhhhhhhhhhh...eee...........hhhhhhhhhhhhhhhhhhhhh...eee.....hhhhhhhhhhhhhhh...eeeeehhhhhhhhhhhhhhhhhhh..eeeee...hhhhhh....eehhhhhhhhhhhhh..eee...........hhhhhhhhhhhhhh.ee...........ee.......eeeee.......hhhhhhhhh...eee.hhhhhh...hhhhhhhhhhhhhhhhh...hhhhhh..hhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3a13 H   7 TIYDYYVDKGYEPSKKRDIIAVFRVTPAEGYTIEQAAGAVAAESSTGTWTTLYPWYEQERWADLSAKAYDFHDMGDGSWIVRIAYPFHAFEEANLPGLLASIAGNIFGMKRVKGLRLEDLYFPEKLIREFDGPAFGIEGVRKMLEIKDRPIYGVVPKPKVGYSPEEFEKLAYDLLSNGADYMkDDENLTSPWYNRFEERAEIMAKIIDKVENETGEKKTWFANITADLLEMEQRLEVLADLGLKHAMVDVVITGWGALRYIRDLAADYGLAIHGHRAMHAAFTRNPYHGISMFVLAKLYRLIGIDQLHVGTAGAGKLEGERDITIQNARILRESHYKPDENDVFHLEQKFYSIKAAFPTSSGGLHPGNIQPVIEALGTDIVLQLGGGTLGHPDGPAAGARAVRQAIDAIMQGIPLDEYAKTHKELARALEKWGHVTPV 444
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186  |    196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436        
                                                                                                                                                                                                                189-KCX                                                                                                                                                                                                                                                           


Chain I from PDB  Type:PROTEIN  Length:437
 aligned with RBL_THEKO | O93627 from UniProtKB/Swiss-Prot  Length:444

    Alignment length:440
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444
            RBL_THEKO     5 FDTIYDYYVDKGYEPSKKRDIIAVFRVTPAEGYTIEQAAGAVAAESSTGTWTTLYPWYEQERWADLSAKAYDFHDMGDGSWIVRIAYPFHAFEEANLPGLLASIAGNIFGMKRVKGLRLEDLYFPEKLIREFDGPAFGIEGVRKMLEIKDRPIYGVVPKPKVGYSPEEFEKLAYDLLSNGADYMKDDENLTSPWYNRFEERAEIMAKIIDKVENETGEKKTWFANITADLLEMEQRLEVLADLGLKHAMVDVVITGWGALRYIRDLAADYGLAIHGHRAMHAAFTRNPYHGISMFVLAKLYRLIGIDQLHVGTAGAGKLEGGKWDVIQNARILRESHYKPDENDVFHLEQKFYSIKAAFPTSSGGLHPGNIQPVIEALGTDIVLQLGGGTLGHPDGPAAGARAVRQAIDAIMQGIPLDEYAKTHKELARALEKWGHVTPV 444
               SCOP domains d3a13i1 I:5-135 automated matches                                                                                                  d3a13i2 I:136-444 automated matches                                                                                                                                                                                                                                                                                   SCOP domains
               CATH domains 3a13I01 I:5-136  [code=3.30.70.150, no name defin ed]                                                                               3a13I02 I:137-438 Rubisco                                                                                                                                                                                                                                                                                     ------ CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhh..........eeeeeeeeee....hhhhhhhhhhhhh...-...--...hhhhhhhh..eeeeeee.....eeeeeeee.hhh...hhhhhhhhhhhhhhhh..eeeeeeeeee.hhhhhh......hhhhhhhhhh......eeee........hhhhhhhhhhhhhhh...eee...........hhhhhhhhhhhhhhhhhhhhh...eeeee...hhhhhhhhhhhhhhh...eeeeehhhhhhhhhhhhhhhhhhh..eeeee...hhhhhh....eehhhhhhhhhhhhh..eee...........hhhhhhhhhhhhhh.ee...........ee.......eeeee.......hhhhhhhhh...eee.hhhhhh...hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3a13 I   5 FDTIYDYYVDKGYEPSKKRDIIAVFRVTPAEGYTIEQAAGAVAAESSTG-WTT--PWYEQERWADLSAKAYDFHDMGDGSWIVRIAYPFHAFEEANLPGLLASIAGNIFGMKRVKGLRLEDLYFPEKLIREFDGPAFGIEGVRKMLEIKDRPIYGVVPKPKVGYSPEEFEKLAYDLLSNGADYMkDDENLTSPWYNRFEERAEIMAKIIDKVENETGEKKTWFANITADLLEMEQRLEVLADLGLKHAMVDVVITGWGALRYIRDLAADYGLAIHGHRAMHAAFTRNPYHGISMFVLAKLYRLIGIDQLHVGTAGAGKLEGERDITIQNARILRESHYKPDENDVFHLEQKFYSIKAAFPTSSGGLHPGNIQPVIEALGTDIVLQLGGGTLGHPDGPAAGARAVRQAIDAIMQGIPLDEYAKTHKELARALEKWGHVTPV 444
                                    14        24        34        44        |-| |  |  64        74        84        94       104       114       124       134       144       154       164       174       184    |  194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444
                                                                           53 | | 60                                                                                                                              189-KCX                                                                                                                                                                                                                                                           
                                                                             55 |                                                                                                                                                                                                                                                                                                                                                                                                   
                                                                               57                                                                                                                                                                                                                                                                                                                                                                                                   


Chain J from PDB  Type:PROTEIN  Length:434
 aligned with RBL_THEKO | O93627 from UniProtKB/Swiss-Prot  Length:444

    Alignment length:437
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       
            RBL_THEKO     8 IYDYYVDKGYEPSKKRDIIAVFRVTPAEGYTIEQAAGAVAAESSTGTWTTLYPWYEQERWADLSAKAYDFHDMGDGSWIVRIAYPFHAFEEANLPGLLASIAGNIFGMKRVKGLRLEDLYFPEKLIREFDGPAFGIEGVRKMLEIKDRPIYGVVPKPKVGYSPEEFEKLAYDLLSNGADYMKDDENLTSPWYNRFEERAEIMAKIIDKVENETGEKKTWFANITADLLEMEQRLEVLADLGLKHAMVDVVITGWGALRYIRDLAADYGLAIHGHRAMHAAFTRNPYHGISMFVLAKLYRLIGIDQLHVGTAGAGKLEGGKWDVIQNARILRESHYKPDENDVFHLEQKFYSIKAAFPTSSGGLHPGNIQPVIEALGTDIVLQLGGGTLGHPDGPAAGARAVRQAIDAIMQGIPLDEYAKTHKELARALEKWGHVTPV 444
               SCOP domains d3a13j1 J:8-135 automated matches                                                                                               d3a13j2 J:136-444 automated matches                                                                                                                                                                                                                                                                                   SCOP domains
               CATH domains 3a13J01 J:8-136  [code=3.30.70.150, no name defined]                                                                             3a13J02 J:137-438 Rubisco                                                                                                                                                                                                                                                                                     ------ CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhh..........eeeeeeeeee....hhhhhhhhhhhhh............hhhhhhhhh.eeeeeee.....eeeeeeee.hhh...hhhhhhhhhhhhhhhh..eeeeeeeeee.hhhhhh......hhhhhhhhhhh.....eeee........hhhhhhhhhhhhhhh...eee...........hhhhhhhhhhhhhhhhhhhhh...eeeee...hhhhhhhhhhhhhhh...eeeeehhhhhhhhhhhhhhhhhhh..eeeee..hhhhh......eehhhhhhhhhhhhh..eee...--.....-hhhhhhhhhhhhhh.ee...........ee.......eeeee......hhhhhhhhhh...eee.hhhhhh...hhhhhhhhhhhhhhhhhh..hhhhhhh.hhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3a13 J   8 IYDYYVDKGYEPSKKRDIIAVFRVTPAEGYTIEQAAGAVAAESSTGTWTTLYPWYEQERWADLSAKAYDFHDMGDGSWIVRIAYPFHAFEEANLPGLLASIAGNIFGMKRVKGLRLEDLYFPEKLIREFDGPAFGIEGVRKMLEIKDRPIYGVVPKPKVGYSPEEFEKLAYDLLSNGADYMkDDENLTSPWYNRFEERAEIMAKIIDKVENETGEKKTWFANITADLLEMEQRLEVLADLGLKHAMVDVVITGWGALRYIRDLAADYGLAIHGHRAMHAAFTRNPYHGISMFVLAKLYRLIGIDQLHVGT--AGKLE-ERDITIQNARILRESHYKPDENDVFHLEQKFYSIKAAFPTSSGGLHPGNIQPVIEALGTDIVLQLGGGTLGHPDGPAAGARAVRQAIDAIMQGIPLDEYAKTHKELARALEKWGHVTPV 444
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187 |     197       207       217       227       237       247       257       267       277       287       297       307       317  |   |327       337       347       357       367       377       387       397       407       417       427       437       
                                                                                                                                                                                                               189-KCX                                                                                                                         317  | 324 |                                                                                                                      
                                                                                                                                                                                                                                                                                                                                                  320   326
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 20)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)
(-)
Class: Alpha and beta proteins (a/b) (23833)
(-)
Fold: TIM beta/alpha-barrel (3956)
(-)
Superfamily: RuBisCo, C-terminal domain (66)
(-)
Family: automated matches (10)
(-)
Protein domain: automated matches (10)
(-)
Pyrococcus kodakaraensis [TaxId: 69014] (1)
2ad3a13a2A:136-444
2bd3a13b2B:136-444
2cd3a13c2C:136-444
2dd3a13d2D:136-444
2ed3a13e2E:136-444
2fd3a13f2F:136-444
2gd3a13g2G:136-444
2hd3a13h2H:136-444
2id3a13i2I:136-444
2jd3a13j2J:136-444

(-) CATH Domains  (2, 20)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3A13)

(-) Gene Ontology  (8, 8)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H,I,J   (RBL_THEKO | O93627)
molecular function
    GO:0016829    lyase activity    Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring.
    GO:0000287    magnesium ion binding    Interacting selectively and non-covalently with magnesium (Mg) ions.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0016984    ribulose-bisphosphate carboxylase activity    Catalysis of the reaction: D-ribulose 1,5-bisphosphate + CO2 + H2O = 2 3-phospho-D-glycerate.
biological process
    GO:0006196    AMP catabolic process    The chemical reactions and pathways resulting in the breakdown of AMP, adenosine monophosphate.
    GO:0015977    carbon fixation    A metabolic process in which carbon (usually derived from carbon dioxide) is incorporated into organic compounds (usually carbohydrates).
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    CA  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    CAP  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    KCX  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    MG  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
    AC9  [ RasMol ]  +environment [ RasMol ]
    BC1  [ RasMol ]  +environment [ RasMol ]
    BC2  [ RasMol ]  +environment [ RasMol ]
    BC3  [ RasMol ]  +environment [ RasMol ]
    BC4  [ RasMol ]  +environment [ RasMol ]
    BC5  [ RasMol ]  +environment [ RasMol ]
    BC6  [ RasMol ]  +environment [ RasMol ]
    BC7  [ RasMol ]  +environment [ RasMol ]
    BC8  [ RasMol ]  +environment [ RasMol ]
    BC9  [ RasMol ]  +environment [ RasMol ]
    CC1  [ RasMol ]  +environment [ RasMol ]
    CC2  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
    Lys A:163 - Pro A:164   [ RasMol ]  
    Lys B:163 - Pro B:164   [ RasMol ]  
    Lys C:163 - Pro C:164   [ RasMol ]  
    Lys D:163 - Pro D:164   [ RasMol ]  
    Lys E:163 - Pro E:164   [ RasMol ]  
    Lys F:163 - Pro F:164   [ RasMol ]  
    Lys G:163 - Pro G:164   [ RasMol ]  
    Lys H:163 - Pro H:164   [ RasMol ]  
    Lys I:163 - Pro I:164   [ RasMol ]  
    Lys J:163 - Pro J:164   [ RasMol ]  
 
Biological Units
  Complete Structure
    Biological Unit 1  [ Jena3D ]
    Biological Unit 2  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ Asym. Unit PNG format | Asym. Unit - sites PNG format | Biol. Unit 1 PNG format | Biol. Unit 1 - sites PNG format | Biol. Unit 2 PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  3a13
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  RBL_THEKO | O93627
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  4.1.1.39
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  RBL_THEKO | O93627
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        RBL_THEKO | O93627: 1geh 3a12 3kdn 3kdo 3wqp

(-) Related Entries Specified in the PDB File

1geh THE APO-FORM ABOUT THE SAME ENZYME
3a12