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(-) Description

Title :  CRYSTAL STRUCTURE OF TYPE III RUBISCO SP6 MUTANT COMPLEXED WITH 2-CABP
 
Authors :  Y. Nishitani, M. Fujihashi, T. Doi, S. Yoshida, H. Atomi, T. Imanaka, K.
Date :  23 Oct 09  (Deposition) - 06 Oct 10  (Release) - 02 Feb 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.36
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F,G,H,I,J
Keywords :  Ribulose-1, 5-Bisphosphate Carboxylase/Oxygenase, Rubisco, Carbon Dioxide Fixation, Lyase, Magnesium, Metal-Binding, Monooxygenase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Nishitani, S. Yoshida, M. Fujihashi, K. Kitagawa, T. Doi, H. Atomi, T. Imanaka, K. Miki
Structure-Based Catalytic Optimization Of A Type Iii Rubisc From A Hyperthermophile
J. Biol. Chem. V. 285 39339 2010
PubMed-ID: 20926376  |  Reference-DOI: 10.1074/JBC.M110.147587

(-) Compounds

Molecule 1 - RIBULOSE BISPHOSPHATE CARBOXYLASE
    Chains: A, B, C, D, E, F, G, H, I, J
    EC Number: 4.1.1.39
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET-21A(+)
    Expression System Strain: ROSETTA2(DE3)PLYSS
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: RBCL, TK2290
    Mutation: YES
    Organism Scientific: THERMOCOCCUS KODAKARAENSIS
    Organism Taxid: 69014
    Strain: KOD1
    Synonym: RUBISCO

 Structural Features

(-) Chains, Units

  12345678910
Asymmetric/Biological Unit : ABCDEFGHIJ

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 30)

Asymmetric/Biological Unit (3, 30)
No.NameCountTypeFull Name
1CAP10Ligand/Ion2-CARBOXYARABINITOL-1,5-DIPHOSPHATE
2KCX10Mod. Amino AcidLYSINE NZ-CARBOXYLIC ACID
3MG10Ligand/IonMAGNESIUM ION

(-) Sites  (20, 20)

Asymmetric Unit (20, 20)
No.NameEvidenceResiduesDescription
01AC1SOFTWARELYS A:163 , LYS A:165 , KCX A:189 , ASP A:191 , GLU A:192 , HIS A:281 , ARG A:282 , HIS A:314 , LYS A:322 , LEU A:323 , SER A:367 , GLY A:368 , GLY A:369 , GLN A:389 , GLY A:391 , GLY A:392 , MG A:500 , HOH A:753 , HOH A:1643 , THR H:54 , TRP H:55 , ASN H:111 , HOH H:1724BINDING SITE FOR RESIDUE CAP A 600
02AC2SOFTWARELYS A:165 , KCX A:189 , ASP A:191 , GLU A:192 , CAP A:600 , ASN H:111BINDING SITE FOR RESIDUE MG A 500
03AC3SOFTWARELYS B:163 , LYS B:165 , KCX B:189 , ASP B:191 , GLU B:192 , HIS B:281 , ARG B:282 , HIS B:314 , LYS B:322 , LEU B:323 , SER B:367 , GLY B:368 , GLY B:369 , GLN B:389 , GLY B:391 , GLY B:392 , HOH B:445 , HOH B:482 , MG B:500 , HOH B:619 , HOH B:1206 , HOH B:1246 , HOH B:1922 , TRP G:55 , ASN G:111 , HOH G:474 , HOH G:1621BINDING SITE FOR RESIDUE CAP B 600
04AC4SOFTWARELYS B:163 , KCX B:189 , ASP B:191 , GLU B:192 , CAP B:600BINDING SITE FOR RESIDUE MG B 500
05AC5SOFTWARELYS C:163 , LYS C:165 , KCX C:189 , ASP C:191 , GLU C:192 , HIS C:281 , ARG C:282 , HIS C:314 , LYS C:322 , LEU C:323 , SER C:367 , GLY C:368 , GLY C:369 , GLN C:389 , GLY C:391 , GLY C:392 , HOH C:481 , HOH C:489 , HOH C:497 , MG C:500 , HOH C:1211 , HOH C:1336 , HOH C:1660 , GLU F:49 , TRP F:55 , ASN F:111 , HOH F:452BINDING SITE FOR RESIDUE CAP C 600
06AC6SOFTWAREKCX C:189 , ASP C:191 , GLU C:192 , CAP C:600BINDING SITE FOR RESIDUE MG C 500
07AC7SOFTWARELYS D:163 , LYS D:165 , KCX D:189 , ASP D:191 , GLU D:192 , HIS D:281 , ARG D:282 , HIS D:314 , LYS D:322 , LEU D:323 , SER D:367 , GLY D:368 , GLY D:369 , GLN D:389 , GLY D:391 , GLY D:392 , HOH D:445 , HOH D:465 , HOH D:475 , HOH D:498 , MG D:500 , HOH D:509 , HOH D:992 , HOH D:1580 , GLU J:49 , THR J:54 , TRP J:55 , ASN J:111BINDING SITE FOR RESIDUE CAP D 600
08AC8SOFTWARELYS D:165 , KCX D:189 , ASP D:191 , GLU D:192 , CAP D:600BINDING SITE FOR RESIDUE MG D 500
09AC9SOFTWARELYS E:163 , LYS E:165 , KCX E:189 , ASP E:191 , GLU E:192 , HIS E:281 , ARG E:282 , HIS E:314 , LYS E:322 , LEU E:323 , SER E:367 , GLY E:368 , GLY E:369 , GLN E:389 , GLY E:391 , GLY E:392 , HOH E:452 , MG E:500 , HOH E:532 , HOH E:956 , HOH E:1175 , HOH E:1679 , TRP I:55 , ASN I:111BINDING SITE FOR RESIDUE CAP E 600
10BC1SOFTWAREKCX E:189 , ASP E:191 , GLU E:192 , CAP E:600BINDING SITE FOR RESIDUE MG E 500
11BC2SOFTWAREGLU C:49 , THR C:54 , TRP C:55 , ASN C:111 , HOH C:488 , HOH C:1632 , LYS F:163 , LYS F:165 , KCX F:189 , ASP F:191 , GLU F:192 , HIS F:281 , ARG F:282 , HIS F:314 , LYS F:322 , LEU F:323 , SER F:367 , GLY F:368 , GLY F:369 , GLN F:389 , GLY F:391 , GLY F:392 , HOH F:447 , HOH F:460 , HOH F:485 , MG F:500 , HOH F:1635 , HOH F:1780BINDING SITE FOR RESIDUE CAP F 600
12BC3SOFTWARELYS F:165 , KCX F:189 , ASP F:191 , GLU F:192 , CAP F:600BINDING SITE FOR RESIDUE MG F 500
13BC4SOFTWAREGLU B:49 , TRP B:55 , ASN B:111 , HOH B:452 , HOH B:453 , LYS G:163 , LYS G:165 , KCX G:189 , ASP G:191 , GLU G:192 , HIS G:281 , ARG G:282 , HIS G:314 , LYS G:322 , LEU G:323 , SER G:367 , GLY G:368 , GLY G:369 , GLN G:389 , GLY G:391 , GLY G:392 , HOH G:445 , HOH G:447 , HOH G:454 , HOH G:463 , HOH G:478 , MG G:500 , HOH G:1075BINDING SITE FOR RESIDUE CAP G 600
14BC5SOFTWAREKCX G:189 , ASP G:191 , GLU G:192 , CAP G:600BINDING SITE FOR RESIDUE MG G 500
15BC6SOFTWARETRP A:55 , ASN A:111 , HOH A:1819 , LYS H:163 , LYS H:165 , KCX H:189 , ASP H:191 , GLU H:192 , HIS H:281 , ARG H:282 , HIS H:314 , LEU H:323 , SER H:367 , GLY H:368 , GLY H:369 , GLN H:389 , GLY H:391 , GLY H:392 , MG H:500 , HOH H:1277 , HOH H:1918BINDING SITE FOR RESIDUE CAP H 600
16BC7SOFTWAREKCX H:189 , ASP H:191 , GLU H:192 , CAP H:600BINDING SITE FOR RESIDUE MG H 500
17BC8SOFTWAREGLU E:49 , THR E:54 , TRP E:55 , ASN E:111 , HOH E:994 , LYS I:163 , LYS I:165 , KCX I:189 , ASP I:191 , GLU I:192 , HIS I:281 , ARG I:282 , HIS I:314 , LYS I:322 , LEU I:323 , SER I:367 , GLY I:368 , GLY I:369 , GLN I:389 , GLY I:391 , GLY I:392 , HOH I:445 , HOH I:450 , HOH I:455 , MG I:500 , HOH I:540 , HOH I:995 , HOH I:1432BINDING SITE FOR RESIDUE CAP I 600
18BC9SOFTWAREASN E:111 , KCX I:189 , ASP I:191 , GLU I:192 , CAP I:600BINDING SITE FOR RESIDUE MG I 500
19CC1SOFTWAREGLU D:49 , TRP D:55 , ASN D:111 , HOH D:1771 , LYS J:163 , LYS J:165 , KCX J:189 , ASP J:191 , GLU J:192 , HIS J:281 , ARG J:282 , HIS J:314 , LYS J:322 , LEU J:323 , SER J:367 , GLY J:368 , GLY J:369 , GLN J:389 , GLY J:391 , GLY J:392 , HOH J:475 , HOH J:499 , MG J:500 , HOH J:1614 , HOH J:1792 , HOH J:1936BINDING SITE FOR RESIDUE CAP J 600
20CC2SOFTWAREKCX J:189 , ASP J:191 , GLU J:192 , CAP J:600BINDING SITE FOR RESIDUE MG J 500

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3KDO)

(-) Cis Peptide Bonds  (10, 10)

Asymmetric/Biological Unit
No.Residues
1Lys A:163 -Pro A:164
2Lys B:163 -Pro B:164
3Lys C:163 -Pro C:164
4Lys D:163 -Pro D:164
5Lys E:163 -Pro E:164
6Lys F:163 -Pro F:164
7Lys G:163 -Pro G:164
8Lys H:163 -Pro H:164
9Lys I:163 -Pro I:164
10Lys J:163 -Pro J:164

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3KDO)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3KDO)

(-) Exons   (0, 0)

(no "Exon" information available for 3KDO)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:436
 aligned with RBL_THEKO | O93627 from UniProtKB/Swiss-Prot  Length:444

    Alignment length:436
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438      
            RBL_THEKO     9 YDYYVDKGYEPSKKRDIIAVFRVTPAEGYTIEQAAGAVAAESSTGTWTTLYPWYEQERWADLSAKAYDFHDMGDGSWIVRIAYPFHAFEEANLPGLLASIAGNIFGMKRVKGLRLEDLYFPEKLIREFDGPAFGIEGVRKMLEIKDRPIYGVVPKPKVGYSPEEFEKLAYDLLSNGADYMKDDENLTSPWYNRFEERAEIMAKIIDKVENETGEKKTWFANITADLLEMEQRLEVLADLGLKHAMVDVVITGWGALRYIRDLAADYGLAIHGHRAMHAAFTRNPYHGISMFVLAKLYRLIGIDQLHVGTAGAGKLEGGKWDVIQNARILRESHYKPDENDVFHLEQKFYSIKAAFPTSSGGLHPGNIQPVIEALGTDIVLQLGGGTLGHPDGPAAGARAVRQAIDAIMQGIPLDEYAKTHKELARALEKWGHVTPV 444
               SCOP domains d3kdoa1 A:9-135 automated matches                                                                                              d3kdoa2 A:136-444 automated matches                                                                                                                                                                                                                                                                                   SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...............eeeeeeeeee....hhhhhhhhhhhhh............hhhhhhhhh.eeeeeee.....eeeeeeee.hhh...hhhhhhhhhhhhhhhh..eeeeeeeeee.hhhhhh......hhhhhhhhhhh.....eeee........hhhhhhhhhhhhhhh...eee...........hhhhhhhhhhhhhhhhhhhh....eeeee...hhhhhhhhhhhhhhhh..eeeeehhhhhhhhhhhhhhhhhhhh.eeeee...hhhhhh....eehhhhhhhhhhhhh..eee...........hhhhhhhhhhhhhh.ee...........ee.......eeeee.......hhhhhhhhh...eee.hhhhhh...hhhhhhhhhhhhhhhhhhh.hhhhhhh.hhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3kdo A   9 YDYYVDKGYEPSKKRDIIAVFRVTPAEGYTIEQAAGAVAAESSTGTWTTLYPWYEQERWADLSAKAYDFHDMGDGSWIVRIAYPFHAFEEANLPGLLASIAGNIFGMKRVKGLRLEDLYFPEKLIREFDGPAFGIEGVRKMLEIKDRPIYGVVPKPKVGYSPEEFEKLAYDLLSNGADYMkDDENLTSPWYNRFEERAEIMAKIIDKVENETGEKKTWFANITADLLEMEQRLEVLADLGLKHAMVDVVITGWGALRYIRDLAADYGLAIHGHRAMHAAFTRNPYHGISMFVLAKLYRLIGIDQLHVGTAGAGKLEGERDITLGFVDLLRESHYKPDENDVFHLEQKFYSIKAAFPTSSGGLHPGNIQPVIEALGTDIVLQLGGGTLGHPDGPAAGARAVRQAIDAIMQGIPLDEYAKTHKELARALEKWGHVTPV 444
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188|      198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438      
                                                                                                                                                                                                              189-KCX                                                                                                                                                                                                                                                           


Chain B from PDB  Type:PROTEIN  Length:438
 aligned with RBL_THEKO | O93627 from UniProtKB/Swiss-Prot  Length:444

    Alignment length:438
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436        
            RBL_THEKO     7 TIYDYYVDKGYEPSKKRDIIAVFRVTPAEGYTIEQAAGAVAAESSTGTWTTLYPWYEQERWADLSAKAYDFHDMGDGSWIVRIAYPFHAFEEANLPGLLASIAGNIFGMKRVKGLRLEDLYFPEKLIREFDGPAFGIEGVRKMLEIKDRPIYGVVPKPKVGYSPEEFEKLAYDLLSNGADYMKDDENLTSPWYNRFEERAEIMAKIIDKVENETGEKKTWFANITADLLEMEQRLEVLADLGLKHAMVDVVITGWGALRYIRDLAADYGLAIHGHRAMHAAFTRNPYHGISMFVLAKLYRLIGIDQLHVGTAGAGKLEGGKWDVIQNARILRESHYKPDENDVFHLEQKFYSIKAAFPTSSGGLHPGNIQPVIEALGTDIVLQLGGGTLGHPDGPAAGARAVRQAIDAIMQGIPLDEYAKTHKELARALEKWGHVTPV 444
               SCOP domains d3kdob1 B:7-135 automated matches                                                                                                d3kdob2 B:136-444 automated matches                                                                                                                                                                                                                                                                                   SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhh..........eeeeeeeeee....hhhhhhhhhhhhh............hhhhhhhhh.eeeeeee.....eeeeeeee.hhh...hhhhhhhhhhhhhhhh..eeeeeeeeee.hhhhhh......hhhhhhhhhhh.....eeee........hhhhhhhhhhhhhhh...eee...........hhhhhhhhhhhhhhhhhhhhh...eeeee...hhhhhhhhhhhhhhhh..eeeeehhhhhhhhhhhhhhhhhhh..eeeee...hhhhhh....eehhhhhhhhhhhhh..eee...........hhhhhhhhhhhhhh.ee...........ee.......eeeee...hhhhhhhhhhhhh...eee.hhhhhh...hhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3kdo B   7 TIYDYYVDKGYEPSKKRDIIAVFRVTPAEGYTIEQAAGAVAAESSTGTWTTLYPWYEQERWADLSAKAYDFHDMGDGSWIVRIAYPFHAFEEANLPGLLASIAGNIFGMKRVKGLRLEDLYFPEKLIREFDGPAFGIEGVRKMLEIKDRPIYGVVPKPKVGYSPEEFEKLAYDLLSNGADYMkDDENLTSPWYNRFEERAEIMAKIIDKVENETGEKKTWFANITADLLEMEQRLEVLADLGLKHAMVDVVITGWGALRYIRDLAADYGLAIHGHRAMHAAFTRNPYHGISMFVLAKLYRLIGIDQLHVGTAGAGKLEGERDITLGFVDLLRESHYKPDENDVFHLEQKFYSIKAAFPTSSGGLHPGNIQPVIEALGTDIVLQLGGGTLGHPDGPAAGARAVRQAIDAIMQGIPLDEYAKTHKELARALEKWGHVTPV 444
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186  |    196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436        
                                                                                                                                                                                                                189-KCX                                                                                                                                                                                                                                                           


Chain C from PDB  Type:PROTEIN  Length:440
 aligned with RBL_THEKO | O93627 from UniProtKB/Swiss-Prot  Length:444

    Alignment length:440
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444
            RBL_THEKO     5 FDTIYDYYVDKGYEPSKKRDIIAVFRVTPAEGYTIEQAAGAVAAESSTGTWTTLYPWYEQERWADLSAKAYDFHDMGDGSWIVRIAYPFHAFEEANLPGLLASIAGNIFGMKRVKGLRLEDLYFPEKLIREFDGPAFGIEGVRKMLEIKDRPIYGVVPKPKVGYSPEEFEKLAYDLLSNGADYMKDDENLTSPWYNRFEERAEIMAKIIDKVENETGEKKTWFANITADLLEMEQRLEVLADLGLKHAMVDVVITGWGALRYIRDLAADYGLAIHGHRAMHAAFTRNPYHGISMFVLAKLYRLIGIDQLHVGTAGAGKLEGGKWDVIQNARILRESHYKPDENDVFHLEQKFYSIKAAFPTSSGGLHPGNIQPVIEALGTDIVLQLGGGTLGHPDGPAAGARAVRQAIDAIMQGIPLDEYAKTHKELARALEKWGHVTPV 444
               SCOP domains d3kdoc1 C:5-135 automated matches                                                                                                  d3kdoc2 C:136-444 automated matches                                                                                                                                                                                                                                                                                   SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhh..........eeeeeeeeee....hhhhhhhhhhhhh............hhhhhhhhh.eeeeeee.....eeeeeeee.hhh...hhhhhhhhhhhhhhhh..eeeeeeeeee.hhhhhh......hhhhhhhhhhh.....eeee........hhhhhhhhhhhhhh....eee...........hhhhhhhhhhhhhhhhhhhhh...eeeee...hhhhhhhhhhhhhhhh..eeeeehhhhhhhhhhhhhhhhhhhh.eeeee...hhhhhh....eehhhhhhhhhhhhh..eee...........hhhhhhhhhhhhhh.ee...........ee.......eeeee.......hhhhhhhhh...eee.hhhhhh...hhhhhhhhhhhhhhhhhhh.hhhhhhh.hhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3kdo C   5 FDTIYDYYVDKGYEPSKKRDIIAVFRVTPAEGYTIEQAAGAVAAESSTGTWTTLYPWYEQERWADLSAKAYDFHDMGDGSWIVRIAYPFHAFEEANLPGLLASIAGNIFGMKRVKGLRLEDLYFPEKLIREFDGPAFGIEGVRKMLEIKDRPIYGVVPKPKVGYSPEEFEKLAYDLLSNGADYMkDDENLTSPWYNRFEERAEIMAKIIDKVENETGEKKTWFANITADLLEMEQRLEVLADLGLKHAMVDVVITGWGALRYIRDLAADYGLAIHGHRAMHAAFTRNPYHGISMFVLAKLYRLIGIDQLHVGTAGAGKLEGERDITLGFVDLLRESHYKPDENDVFHLEQKFYSIKAAFPTSSGGLHPGNIQPVIEALGTDIVLQLGGGTLGHPDGPAAGARAVRQAIDAIMQGIPLDEYAKTHKELARALEKWGHVTPV 444
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184    |  194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444
                                                                                                                                                                                                                  189-KCX                                                                                                                                                                                                                                                           


Chain D from PDB  Type:PROTEIN  Length:437
 aligned with RBL_THEKO | O93627 from UniProtKB/Swiss-Prot  Length:444

    Alignment length:437
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       
            RBL_THEKO     8 IYDYYVDKGYEPSKKRDIIAVFRVTPAEGYTIEQAAGAVAAESSTGTWTTLYPWYEQERWADLSAKAYDFHDMGDGSWIVRIAYPFHAFEEANLPGLLASIAGNIFGMKRVKGLRLEDLYFPEKLIREFDGPAFGIEGVRKMLEIKDRPIYGVVPKPKVGYSPEEFEKLAYDLLSNGADYMKDDENLTSPWYNRFEERAEIMAKIIDKVENETGEKKTWFANITADLLEMEQRLEVLADLGLKHAMVDVVITGWGALRYIRDLAADYGLAIHGHRAMHAAFTRNPYHGISMFVLAKLYRLIGIDQLHVGTAGAGKLEGGKWDVIQNARILRESHYKPDENDVFHLEQKFYSIKAAFPTSSGGLHPGNIQPVIEALGTDIVLQLGGGTLGHPDGPAAGARAVRQAIDAIMQGIPLDEYAKTHKELARALEKWGHVTPV 444
               SCOP domains d3kdod1 D:8-135 automated matches                                                                                               d3kdod2 D:136-444 automated matches                                                                                                                                                                                                                                                                                   SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhh..........eeeeeeeeee....hhhhhhhhhhhhh............hhhhhhhhh.eeeeeee.....eeeeeeee.hhh...hhhhhhhhhhhhhhhh..eeeeeeeeee.hhhhhh......hhhhhhhhhh......eeee........hhhhhhhhhhhhhhh...eee...........hhhhhhhhhhhhhhhhhhhhh...eeeee...hhhhhhhhhhhhhhh...eeeeehhhhhhhhhhhhhhhhhhhh.eeeee...hhhhhh....eehhhhhhhhhhhhh..eee...........hhhhhhhhhhhhhh.ee...........ee.......eeeee...hhhhhhhhhhhhh...eee.hhhhhh...hhhhhhhhhhhhhhhhhh..hhhhhh..hhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3kdo D   8 IYDYYVDKGYEPSKKRDIIAVFRVTPAEGYTIEQAAGAVAAESSTGTWTTLYPWYEQERWADLSAKAYDFHDMGDGSWIVRIAYPFHAFEEANLPGLLASIAGNIFGMKRVKGLRLEDLYFPEKLIREFDGPAFGIEGVRKMLEIKDRPIYGVVPKPKVGYSPEEFEKLAYDLLSNGADYMkDDENLTSPWYNRFEERAEIMAKIIDKVENETGEKKTWFANITADLLEMEQRLEVLADLGLKHAMVDVVITGWGALRYIRDLAADYGLAIHGHRAMHAAFTRNPYHGISMFVLAKLYRLIGIDQLHVGTAGAGKLEGERDITLGFVDLLRESHYKPDENDVFHLEQKFYSIKAAFPTSSGGLHPGNIQPVIEALGTDIVLQLGGGTLGHPDGPAAGARAVRQAIDAIMQGIPLDEYAKTHKELARALEKWGHVTPV 444
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187 |     197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       
                                                                                                                                                                                                               189-KCX                                                                                                                                                                                                                                                           


Chain E from PDB  Type:PROTEIN  Length:440
 aligned with RBL_THEKO | O93627 from UniProtKB/Swiss-Prot  Length:444

    Alignment length:440
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444
            RBL_THEKO     5 FDTIYDYYVDKGYEPSKKRDIIAVFRVTPAEGYTIEQAAGAVAAESSTGTWTTLYPWYEQERWADLSAKAYDFHDMGDGSWIVRIAYPFHAFEEANLPGLLASIAGNIFGMKRVKGLRLEDLYFPEKLIREFDGPAFGIEGVRKMLEIKDRPIYGVVPKPKVGYSPEEFEKLAYDLLSNGADYMKDDENLTSPWYNRFEERAEIMAKIIDKVENETGEKKTWFANITADLLEMEQRLEVLADLGLKHAMVDVVITGWGALRYIRDLAADYGLAIHGHRAMHAAFTRNPYHGISMFVLAKLYRLIGIDQLHVGTAGAGKLEGGKWDVIQNARILRESHYKPDENDVFHLEQKFYSIKAAFPTSSGGLHPGNIQPVIEALGTDIVLQLGGGTLGHPDGPAAGARAVRQAIDAIMQGIPLDEYAKTHKELARALEKWGHVTPV 444
               SCOP domains d3kdoe1 E:5-135 automated matches                                                                                                  d3kdoe2 E:136-444 automated matches                                                                                                                                                                                                                                                                                   SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhh............eeeeeeeeee....hhhhhhhhhhhhh............hhhhhhhhh.eeeeeee.....eeeeeeee.hhh...hhhhhhhhhhhhhhhh..eeeeeeeeee.hhhhhh......hhhhhhhhhhh.....eeee........hhhhhhhhhhhhhhh...eee...........hhhhhhhhhhhhhhhhhhhhh...eee.....hhhhhhhhhhhhhhh...eeeeehhhhh..hhhhhhhhhhhhh.eeeee...hhhhhh....eehhhhhhhhhhhhh..eee...........hhhhhhhhhhhhhh.ee...........ee.......eeeee...hhhhhhhhhhhhh...eee.hhhhhh...hhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3kdo E   5 FDTIYDYYVDKGYEPSKKRDIIAVFRVTPAEGYTIEQAAGAVAAESSTGTWTTLYPWYEQERWADLSAKAYDFHDMGDGSWIVRIAYPFHAFEEANLPGLLASIAGNIFGMKRVKGLRLEDLYFPEKLIREFDGPAFGIEGVRKMLEIKDRPIYGVVPKPKVGYSPEEFEKLAYDLLSNGADYMkDDENLTSPWYNRFEERAEIMAKIIDKVENETGEKKTWFANITADLLEMEQRLEVLADLGLKHAMVDVVITGWGALRYIRDLAADYGLAIHGHRAMHAAFTRNPYHGISMFVLAKLYRLIGIDQLHVGTAGAGKLEGERDITLGFVDLLRESHYKPDENDVFHLEQKFYSIKAAFPTSSGGLHPGNIQPVIEALGTDIVLQLGGGTLGHPDGPAAGARAVRQAIDAIMQGIPLDEYAKTHKELARALEKWGHVTPV 444
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184    |  194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444
                                                                                                                                                                                                                  189-KCX                                                                                                                                                                                                                                                           


Chain F from PDB  Type:PROTEIN  Length:437
 aligned with RBL_THEKO | O93627 from UniProtKB/Swiss-Prot  Length:444

    Alignment length:437
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       
            RBL_THEKO     8 IYDYYVDKGYEPSKKRDIIAVFRVTPAEGYTIEQAAGAVAAESSTGTWTTLYPWYEQERWADLSAKAYDFHDMGDGSWIVRIAYPFHAFEEANLPGLLASIAGNIFGMKRVKGLRLEDLYFPEKLIREFDGPAFGIEGVRKMLEIKDRPIYGVVPKPKVGYSPEEFEKLAYDLLSNGADYMKDDENLTSPWYNRFEERAEIMAKIIDKVENETGEKKTWFANITADLLEMEQRLEVLADLGLKHAMVDVVITGWGALRYIRDLAADYGLAIHGHRAMHAAFTRNPYHGISMFVLAKLYRLIGIDQLHVGTAGAGKLEGGKWDVIQNARILRESHYKPDENDVFHLEQKFYSIKAAFPTSSGGLHPGNIQPVIEALGTDIVLQLGGGTLGHPDGPAAGARAVRQAIDAIMQGIPLDEYAKTHKELARALEKWGHVTPV 444
               SCOP domains d3kdof1 F:8-135 automated matches                                                                                               d3kdof2 F:136-444 automated matches                                                                                                                                                                                                                                                                                   SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhh..........eeeeeeeeee....hhhhhhhhhhhhh............hhhhhhhhh.eeeeeee.....eeeeeeee.hhh...hhhhhhhhhhhhhhhh..eeeeeeeeee.hhhhhh......hhhhhhhhhhh.....eeee........hhhhhhhhhhhhhh....eee...........hhhhhhhhhhhhhhhhhhhhh...eeeee...hhhhhhhhhhhhhhh...eeeeehhhhhhhhhhhhhhhhhhh..eeeee...hhhhhh....eehhhhhhhhhhhhh..eee...........hhhhhhhhhhhhhh.ee...........ee.......eeeee...hhhhhhhhhhhhh...eee.hhhhhh...hhhhhhhhhhhhhhhhhhh.hhhhhhh.hhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3kdo F   8 IYDYYVDKGYEPSKKRDIIAVFRVTPAEGYTIEQAAGAVAAESSTGTWTTLYPWYEQERWADLSAKAYDFHDMGDGSWIVRIAYPFHAFEEANLPGLLASIAGNIFGMKRVKGLRLEDLYFPEKLIREFDGPAFGIEGVRKMLEIKDRPIYGVVPKPKVGYSPEEFEKLAYDLLSNGADYMkDDENLTSPWYNRFEERAEIMAKIIDKVENETGEKKTWFANITADLLEMEQRLEVLADLGLKHAMVDVVITGWGALRYIRDLAADYGLAIHGHRAMHAAFTRNPYHGISMFVLAKLYRLIGIDQLHVGTAGAGKLEGERDITLGFVDLLRESHYKPDENDVFHLEQKFYSIKAAFPTSSGGLHPGNIQPVIEALGTDIVLQLGGGTLGHPDGPAAGARAVRQAIDAIMQGIPLDEYAKTHKELARALEKWGHVTPV 444
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187 |     197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       
                                                                                                                                                                                                               189-KCX                                                                                                                                                                                                                                                           


Chain G from PDB  Type:PROTEIN  Length:437
 aligned with RBL_THEKO | O93627 from UniProtKB/Swiss-Prot  Length:444

    Alignment length:437
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       
            RBL_THEKO     8 IYDYYVDKGYEPSKKRDIIAVFRVTPAEGYTIEQAAGAVAAESSTGTWTTLYPWYEQERWADLSAKAYDFHDMGDGSWIVRIAYPFHAFEEANLPGLLASIAGNIFGMKRVKGLRLEDLYFPEKLIREFDGPAFGIEGVRKMLEIKDRPIYGVVPKPKVGYSPEEFEKLAYDLLSNGADYMKDDENLTSPWYNRFEERAEIMAKIIDKVENETGEKKTWFANITADLLEMEQRLEVLADLGLKHAMVDVVITGWGALRYIRDLAADYGLAIHGHRAMHAAFTRNPYHGISMFVLAKLYRLIGIDQLHVGTAGAGKLEGGKWDVIQNARILRESHYKPDENDVFHLEQKFYSIKAAFPTSSGGLHPGNIQPVIEALGTDIVLQLGGGTLGHPDGPAAGARAVRQAIDAIMQGIPLDEYAKTHKELARALEKWGHVTPV 444
               SCOP domains d3kdog1 G:8-135 automated matches                                                                                               d3kdog2 G:136-444 automated matches                                                                                                                                                                                                                                                                                   SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhh..........eeeeeeeeee....hhhhhhhhhhhhh............hhhhhhhh..eeeeeee.....eeeeeeee.hhh...hhhhhhhhhhhhhhhh..eeeeeeeeee.hhhhhh......hhhhhhhhhhh.....eeee........hhhhhhhhhhhhhhh...eee...........hhhhhhhhhhhhhhhhhhhhh...eeeee...hhhhhhhhhhhhhhh...eeeeehhhhhhhhhhhhhhhhhhh..eeeee...hhhhhh....eehhhhhhhhhhhhh..eee...........hhhhhhhhhhhhhh.ee...........ee.......eeeee.......hhhhhhhhh...eee.hhhhhh...hhhhhhhhhhhhhhhhhhh.hhhhhh..hhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3kdo G   8 IYDYYVDKGYEPSKKRDIIAVFRVTPAEGYTIEQAAGAVAAESSTGTWTTLYPWYEQERWADLSAKAYDFHDMGDGSWIVRIAYPFHAFEEANLPGLLASIAGNIFGMKRVKGLRLEDLYFPEKLIREFDGPAFGIEGVRKMLEIKDRPIYGVVPKPKVGYSPEEFEKLAYDLLSNGADYMkDDENLTSPWYNRFEERAEIMAKIIDKVENETGEKKTWFANITADLLEMEQRLEVLADLGLKHAMVDVVITGWGALRYIRDLAADYGLAIHGHRAMHAAFTRNPYHGISMFVLAKLYRLIGIDQLHVGTAGAGKLEGERDITLGFVDLLRESHYKPDENDVFHLEQKFYSIKAAFPTSSGGLHPGNIQPVIEALGTDIVLQLGGGTLGHPDGPAAGARAVRQAIDAIMQGIPLDEYAKTHKELARALEKWGHVTPV 444
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187 |     197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       
                                                                                                                                                                                                               189-KCX                                                                                                                                                                                                                                                           


Chain H from PDB  Type:PROTEIN  Length:438
 aligned with RBL_THEKO | O93627 from UniProtKB/Swiss-Prot  Length:444

    Alignment length:438
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436        
            RBL_THEKO     7 TIYDYYVDKGYEPSKKRDIIAVFRVTPAEGYTIEQAAGAVAAESSTGTWTTLYPWYEQERWADLSAKAYDFHDMGDGSWIVRIAYPFHAFEEANLPGLLASIAGNIFGMKRVKGLRLEDLYFPEKLIREFDGPAFGIEGVRKMLEIKDRPIYGVVPKPKVGYSPEEFEKLAYDLLSNGADYMKDDENLTSPWYNRFEERAEIMAKIIDKVENETGEKKTWFANITADLLEMEQRLEVLADLGLKHAMVDVVITGWGALRYIRDLAADYGLAIHGHRAMHAAFTRNPYHGISMFVLAKLYRLIGIDQLHVGTAGAGKLEGGKWDVIQNARILRESHYKPDENDVFHLEQKFYSIKAAFPTSSGGLHPGNIQPVIEALGTDIVLQLGGGTLGHPDGPAAGARAVRQAIDAIMQGIPLDEYAKTHKELARALEKWGHVTPV 444
               SCOP domains d3kdoh1 H:7-135 automated matches                                                                                                d3kdoh2 H:136-444 automated matches                                                                                                                                                                                                                                                                                   SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhh..........eeeeeeeeee....hhhhhhhhhhhhh............hhhhhhhhh.eeeeeee.....eeeeeeee.hhh...hhhhhhhhhhhhhhhh..eeeeeeeeee.hhhhhh......hhhhhhhhhhh.....eeee........hhhhhhhhhhhhhhh...eee...........hhhhhhhhhhhhhhhhhhhhh...eeeee...hhhhhhhhhhhhhhhh..eeeeehhhhh..hhhhhhhhhhhhh.eeeee...hhhhhh....eehhhhhhhhhhhhh..eee...........hhhhhhhhhhhhhh.ee...........ee.......eeeee.......hhhhhhhhh...eee.hhhhhh...hhhhhhhhhhhhhhhhhhh.hhhhhhh.hhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3kdo H   7 TIYDYYVDKGYEPSKKRDIIAVFRVTPAEGYTIEQAAGAVAAESSTGTWTTLYPWYEQERWADLSAKAYDFHDMGDGSWIVRIAYPFHAFEEANLPGLLASIAGNIFGMKRVKGLRLEDLYFPEKLIREFDGPAFGIEGVRKMLEIKDRPIYGVVPKPKVGYSPEEFEKLAYDLLSNGADYMkDDENLTSPWYNRFEERAEIMAKIIDKVENETGEKKTWFANITADLLEMEQRLEVLADLGLKHAMVDVVITGWGALRYIRDLAADYGLAIHGHRAMHAAFTRNPYHGISMFVLAKLYRLIGIDQLHVGTAGAGKLEGERDITLGFVDLLRESHYKPDENDVFHLEQKFYSIKAAFPTSSGGLHPGNIQPVIEALGTDIVLQLGGGTLGHPDGPAAGARAVRQAIDAIMQGIPLDEYAKTHKELARALEKWGHVTPV 444
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186  |    196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436        
                                                                                                                                                                                                                189-KCX                                                                                                                                                                                                                                                           


Chain I from PDB  Type:PROTEIN  Length:438
 aligned with RBL_THEKO | O93627 from UniProtKB/Swiss-Prot  Length:444

    Alignment length:438
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436        
            RBL_THEKO     7 TIYDYYVDKGYEPSKKRDIIAVFRVTPAEGYTIEQAAGAVAAESSTGTWTTLYPWYEQERWADLSAKAYDFHDMGDGSWIVRIAYPFHAFEEANLPGLLASIAGNIFGMKRVKGLRLEDLYFPEKLIREFDGPAFGIEGVRKMLEIKDRPIYGVVPKPKVGYSPEEFEKLAYDLLSNGADYMKDDENLTSPWYNRFEERAEIMAKIIDKVENETGEKKTWFANITADLLEMEQRLEVLADLGLKHAMVDVVITGWGALRYIRDLAADYGLAIHGHRAMHAAFTRNPYHGISMFVLAKLYRLIGIDQLHVGTAGAGKLEGGKWDVIQNARILRESHYKPDENDVFHLEQKFYSIKAAFPTSSGGLHPGNIQPVIEALGTDIVLQLGGGTLGHPDGPAAGARAVRQAIDAIMQGIPLDEYAKTHKELARALEKWGHVTPV 444
               SCOP domains d3kdoi1 I:7-135 automated matches                                                                                                d3kdoi2 I:136-444 automated matches                                                                                                                                                                                                                                                                                   SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhh...........eeeeeeeeee....hhhhhhhhhhhhh............hhhhhhhhh.eeeeeee.....eeeeeeee.hhh...hhhhhhhhhhhhhhhh..eeeeeeeeee.hhhhhh......hhhhhhhhhhh.....eeee........hhhhhhhhhhhhhh....eee...........hhhhhhhhhhhhhhhhhhhhh...eeeee...hhhhhhhhhhhhhhhh..eeeeehhhhhhhhhhhhhhhhhhh..eeeee...hhhhhh....eehhhhhhhhhhhhh..eee...........hhhhhhhhhhhhhh.ee...........ee.......eeeee.......hhhhhhhhh...eee.hhhhhh...hhhhhhhhhhhhhhhhhhh.hhhhhh..hhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3kdo I   7 TIYDYYVDKGYEPSKKRDIIAVFRVTPAEGYTIEQAAGAVAAESSTGTWTTLYPWYEQERWADLSAKAYDFHDMGDGSWIVRIAYPFHAFEEANLPGLLASIAGNIFGMKRVKGLRLEDLYFPEKLIREFDGPAFGIEGVRKMLEIKDRPIYGVVPKPKVGYSPEEFEKLAYDLLSNGADYMkDDENLTSPWYNRFEERAEIMAKIIDKVENETGEKKTWFANITADLLEMEQRLEVLADLGLKHAMVDVVITGWGALRYIRDLAADYGLAIHGHRAMHAAFTRNPYHGISMFVLAKLYRLIGIDQLHVGTAGAGKLEGERDITLGFVDLLRESHYKPDENDVFHLEQKFYSIKAAFPTSSGGLHPGNIQPVIEALGTDIVLQLGGGTLGHPDGPAAGARAVRQAIDAIMQGIPLDEYAKTHKELARALEKWGHVTPV 444
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186  |    196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436        
                                                                                                                                                                                                                189-KCX                                                                                                                                                                                                                                                           


Chain J from PDB  Type:PROTEIN  Length:438
 aligned with RBL_THEKO | O93627 from UniProtKB/Swiss-Prot  Length:444

    Alignment length:438
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436        
            RBL_THEKO     7 TIYDYYVDKGYEPSKKRDIIAVFRVTPAEGYTIEQAAGAVAAESSTGTWTTLYPWYEQERWADLSAKAYDFHDMGDGSWIVRIAYPFHAFEEANLPGLLASIAGNIFGMKRVKGLRLEDLYFPEKLIREFDGPAFGIEGVRKMLEIKDRPIYGVVPKPKVGYSPEEFEKLAYDLLSNGADYMKDDENLTSPWYNRFEERAEIMAKIIDKVENETGEKKTWFANITADLLEMEQRLEVLADLGLKHAMVDVVITGWGALRYIRDLAADYGLAIHGHRAMHAAFTRNPYHGISMFVLAKLYRLIGIDQLHVGTAGAGKLEGGKWDVIQNARILRESHYKPDENDVFHLEQKFYSIKAAFPTSSGGLHPGNIQPVIEALGTDIVLQLGGGTLGHPDGPAAGARAVRQAIDAIMQGIPLDEYAKTHKELARALEKWGHVTPV 444
               SCOP domains d3kdoj1 J:7-135 automated matches                                                                                                d3kdoj2 J:136-444 automated matches                                                                                                                                                                                                                                                                                   SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhh..........eeeeeeeeee....hhhhhhhhhhhhh............hhhhhhhhh.eeeeeee.....eeeeeeee.hhh...hhhhhhhhhhhhhhhh..eeeeeeeeee.hhhhhh......hhhhhhhhhhh.....eeee........hhhhhhhhhhhhhhh...eee...........hhhhhhhhhhhhhhhhhhhhh...eee.....hhhhhhhhhhhhhhh...eeeeehhhhh..hhhhhhhhhhhhh.eeeee...hhhhhh....eehhhhhhhhhhhhh..eee...........hhhhhhhhhhhhhh.ee...........ee.......eeeee......hhhhhhhhhh...eee.hhhhhh...hhhhhhhhhhhhhhhhhhh.hhhhhh..hhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3kdo J   7 TIYDYYVDKGYEPSKKRDIIAVFRVTPAEGYTIEQAAGAVAAESSTGTWTTLYPWYEQERWADLSAKAYDFHDMGDGSWIVRIAYPFHAFEEANLPGLLASIAGNIFGMKRVKGLRLEDLYFPEKLIREFDGPAFGIEGVRKMLEIKDRPIYGVVPKPKVGYSPEEFEKLAYDLLSNGADYMkDDENLTSPWYNRFEERAEIMAKIIDKVENETGEKKTWFANITADLLEMEQRLEVLADLGLKHAMVDVVITGWGALRYIRDLAADYGLAIHGHRAMHAAFTRNPYHGISMFVLAKLYRLIGIDQLHVGTAGAGKLEGERDITLGFVDLLRESHYKPDENDVFHLEQKFYSIKAAFPTSSGGLHPGNIQPVIEALGTDIVLQLGGGTLGHPDGPAAGARAVRQAIDAIMQGIPLDEYAKTHKELARALEKWGHVTPV 444
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186  |    196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436        
                                                                                                                                                                                                                189-KCX
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 20)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)
(-)
Class: Alpha and beta proteins (a/b) (23833)
(-)
Fold: TIM beta/alpha-barrel (3956)
(-)
Superfamily: RuBisCo, C-terminal domain (66)
(-)
Family: automated matches (10)
(-)
Protein domain: automated matches (10)
(-)
Thermococcus kodakaraensis [TaxId: 69014] (2)
2ad3kdoa2A:136-444
2bd3kdob2B:136-444
2cd3kdoc2C:136-444
2dd3kdod2D:136-444
2ed3kdoe2E:136-444
2fd3kdof2F:136-444
2gd3kdog2G:136-444
2hd3kdoh2H:136-444
2id3kdoi2I:136-444
2jd3kdoj2J:136-444

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3KDO)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3KDO)

(-) Gene Ontology  (8, 8)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H,I,J   (RBL_THEKO | O93627)
molecular function
    GO:0016829    lyase activity    Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring.
    GO:0000287    magnesium ion binding    Interacting selectively and non-covalently with magnesium (Mg) ions.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0016984    ribulose-bisphosphate carboxylase activity    Catalysis of the reaction: D-ribulose 1,5-bisphosphate + CO2 + H2O = 2 3-phospho-D-glycerate.
biological process
    GO:0006196    AMP catabolic process    The chemical reactions and pathways resulting in the breakdown of AMP, adenosine monophosphate.
    GO:0015977    carbon fixation    A metabolic process in which carbon (usually derived from carbon dioxide) is incorporated into organic compounds (usually carbohydrates).
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        RBL_THEKO | O93627: 1geh 3a12 3a13 3kdn 3wqp

(-) Related Entries Specified in the PDB File

1geh THE APO-FORM ABOUT THE SAME ENZYME
3a12
3a13
3kbn