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(-) Description

Title :  CRYSTAL STRUCTURE OF TYPE III RUBISCO COMPLEXED WITH 2-CABP
 
Authors :  Y. Nishitani, M. Fujihashi, T. Doi, S. Yoshida, H. Atomi, T. Imanaka, K.
Date :  25 Mar 09  (Deposition) - 07 Apr 10  (Release) - 02 Feb 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J
Biol. Unit 1:  A,B,C,D,E  (2x)
Biol. Unit 2:  F,G,H,I,J  (2x)
Keywords :  Ribulose-1, 5-Bisphosphate Carboxylase/Oxygenase, Rubisco, Lyase, Carbon Dioxide Fixation, Magnesium, Metal-Binding, Monooxygenase, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Nishitani, S. Yoshida, M. Fujihashi, K. Kitagawa, T. Doi, H. Atomi, T. Imanaka, K. Miki
Structure-Based Catalytic Optimization Of A Type Iii Rubisc From A Hyperthermophile
J. Biol. Chem. V. 285 39339 2010
PubMed-ID: 20926376  |  Reference-DOI: 10.1074/JBC.M110.147587

(-) Compounds

Molecule 1 - RIBULOSE BISPHOSPHATE CARBOXYLASE
    Chains: A, B, C, D, E, F, G, H, I, J
    EC Number: 4.1.1.39
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET-21A(+)
    Expression System Strain: ROSETTA2(DE3)PLYSS
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: RBCL, TK2290
    Organism Common: THERMOCOCCUS KODAKARAENSIS
    Organism Scientific: PYROCOCCUS KODAKARAENSIS
    Organism Taxid: 69014
    Strain: KOD1
    Synonym: RUBISCO

 Structural Features

(-) Chains, Units

  12345678910
Asymmetric Unit : ABCDEFGHIJ
Biological Unit 1 (2x): ABCDE     
Biological Unit 2 (2x):      FGHIJ

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 30)

Asymmetric Unit (3, 30)
No.NameCountTypeFull Name
1CAP10Ligand/Ion2-CARBOXYARABINITOL-1,5-DIPHOSPHATE
2KCX10Mod. Amino AcidLYSINE NZ-CARBOXYLIC ACID
3MG10Ligand/IonMAGNESIUM ION
Biological Unit 1 (2, 20)
No.NameCountTypeFull Name
1CAP10Ligand/Ion2-CARBOXYARABINITOL-1,5-DIPHOSPHATE
2KCX10Mod. Amino AcidLYSINE NZ-CARBOXYLIC ACID
3MG-1Ligand/IonMAGNESIUM ION
Biological Unit 2 (2, 20)
No.NameCountTypeFull Name
1CAP10Ligand/Ion2-CARBOXYARABINITOL-1,5-DIPHOSPHATE
2KCX10Mod. Amino AcidLYSINE NZ-CARBOXYLIC ACID
3MG-1Ligand/IonMAGNESIUM ION

(-) Sites  (20, 20)

Asymmetric Unit (20, 20)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREKCX A:189 , ASP A:191 , GLU A:192 , CAP A:446 , ASN C:111BINDING SITE FOR RESIDUE MG A 445
02AC2SOFTWAREVAL A:161 , LYS A:163 , LYS A:165 , KCX A:189 , ASP A:191 , GLU A:192 , HIS A:281 , ARG A:282 , HIS A:314 , LYS A:322 , LEU A:323 , SER A:367 , GLY A:368 , GLY A:369 , GLN A:389 , GLY A:391 , GLY A:392 , MG A:445 , HOH A:521 , HOH A:523 , HOH A:528 , HOH A:574 , HOH A:579 , HOH A:615 , HOH A:626 , HOH A:684 , GLU C:49 , THR C:54 , TRP C:55 , ASN C:111BINDING SITE FOR RESIDUE CAP A 446
03AC3SOFTWAREASN B:111 , KCX B:189 , ASP B:191 , GLU B:192 , CAP B:446BINDING SITE FOR RESIDUE MG B 445
04AC4SOFTWAREGLU B:49 , TRP B:55 , ASN B:111 , LYS B:163 , LYS B:165 , KCX B:189 , ASP B:191 , GLU B:192 , HIS B:281 , ARG B:282 , HIS B:314 , LYS B:322 , LEU B:323 , SER B:367 , GLY B:368 , GLY B:369 , GLN B:389 , GLY B:391 , GLY B:392 , MG B:445 , HOH B:519 , HOH B:521 , HOH B:542 , HOH B:551 , HOH B:556 , HOH B:559 , HOH B:692 , HOH B:712 , HOH B:713BINDING SITE FOR RESIDUE CAP B 446
05AC5SOFTWAREKCX C:189 , ASP C:191 , GLU C:192 , CAP C:446BINDING SITE FOR RESIDUE MG C 445
06AC6SOFTWAREGLU A:49 , TRP A:55 , ASN A:111 , HOH A:611 , LYS C:163 , LYS C:165 , KCX C:189 , ASP C:191 , GLU C:192 , HIS C:281 , ARG C:282 , HIS C:314 , LYS C:322 , LEU C:323 , SER C:367 , GLY C:368 , GLY C:369 , GLN C:389 , GLY C:391 , GLY C:392 , MG C:445 , HOH C:524 , HOH C:528 , HOH C:557 , HOH C:562 , HOH C:591 , HOH C:658 , HOH C:740BINDING SITE FOR RESIDUE CAP C 446
07AC7SOFTWAREKCX D:189 , ASP D:191 , GLU D:192 , CAP D:446BINDING SITE FOR RESIDUE MG D 445
08AC8SOFTWARELYS D:163 , LYS D:165 , KCX D:189 , ASP D:191 , GLU D:192 , HIS D:281 , ARG D:282 , HIS D:314 , LYS D:322 , LEU D:323 , SER D:367 , GLY D:368 , GLY D:369 , GLN D:389 , GLY D:391 , GLY D:392 , MG D:445 , HOH D:515 , HOH D:519 , HOH D:524 , HOH D:537 , HOH D:538 , HOH D:539 , HOH D:665 , HOH D:716 , GLU E:49 , TRP E:55 , ASN E:111BINDING SITE FOR RESIDUE CAP D 446
09AC9SOFTWAREKCX E:189 , ASP E:191 , GLU E:192 , CAP E:446BINDING SITE FOR RESIDUE MG E 445
10BC1SOFTWAREGLU D:49 , TRP D:55 , ASN D:111 , HOH D:682 , LYS E:163 , LYS E:165 , KCX E:189 , ASP E:191 , GLU E:192 , HIS E:281 , ARG E:282 , HIS E:314 , LYS E:322 , LEU E:323 , SER E:367 , GLY E:368 , GLY E:369 , GLN E:389 , GLY E:391 , GLY E:392 , MG E:445 , HOH E:525 , HOH E:532 , HOH E:543 , HOH E:570 , HOH E:574 , HOH E:580 , HOH E:608BINDING SITE FOR RESIDUE CAP E 446
11BC2SOFTWAREKCX F:189 , ASP F:191 , GLU F:192 , CAP F:446BINDING SITE FOR RESIDUE MG F 445
12BC3SOFTWARELYS F:163 , LYS F:165 , KCX F:189 , ASP F:191 , GLU F:192 , HIS F:281 , ARG F:282 , HIS F:314 , LYS F:322 , LEU F:323 , SER F:367 , GLY F:368 , GLY F:369 , GLN F:389 , GLY F:391 , GLY F:392 , MG F:445 , HOH F:519 , HOH F:525 , HOH F:536 , HOH F:537 , HOH F:556 , GLU H:49 , THR H:54 , TRP H:55 , ASN H:111 , HOH H:513BINDING SITE FOR RESIDUE CAP F 446
13BC4SOFTWAREKCX G:189 , ASP G:191 , GLU G:192 , CAP G:446BINDING SITE FOR RESIDUE MG G 445
14BC5SOFTWAREGLU G:49 , TRP G:55 , ASN G:111 , LYS G:163 , LYS G:165 , KCX G:189 , ASP G:191 , GLU G:192 , HIS G:281 , ARG G:282 , HIS G:314 , LYS G:322 , LEU G:323 , SER G:367 , GLY G:368 , GLY G:369 , GLN G:389 , GLY G:391 , GLY G:392 , MG G:445 , HOH G:507 , HOH G:524 , HOH G:529 , HOH G:536 , HOH G:540 , HOH G:561 , HOH G:574 , HOH G:602 , HOH G:607BINDING SITE FOR RESIDUE CAP G 446
15BC6SOFTWAREASN F:111 , LYS H:163 , LYS H:165 , KCX H:189 , ASP H:191 , GLU H:192 , CAP H:446BINDING SITE FOR RESIDUE MG H 445
16BC7SOFTWAREGLU F:49 , TRP F:55 , ASN F:111 , LYS H:163 , LYS H:165 , KCX H:189 , ASP H:191 , GLU H:192 , HIS H:281 , ARG H:282 , HIS H:314 , LYS H:322 , LEU H:323 , SER H:367 , GLY H:368 , GLY H:369 , GLN H:389 , GLY H:391 , GLY H:392 , MG H:445 , HOH H:520 , HOH H:547 , HOH H:571 , HOH H:584 , HOH H:595 , HOH H:601 , HOH H:604 , HOH H:613BINDING SITE FOR RESIDUE CAP H 446
17BC8SOFTWAREKCX I:189 , ASP I:191 , GLU I:192 , CAP I:446BINDING SITE FOR RESIDUE MG I 445
18BC9SOFTWARELYS I:163 , LYS I:165 , KCX I:189 , ASP I:191 , GLU I:192 , HIS I:281 , ARG I:282 , HIS I:314 , LYS I:322 , LEU I:323 , SER I:367 , GLY I:368 , GLY I:369 , GLN I:389 , GLY I:391 , GLY I:392 , MG I:445 , HOH I:515 , HOH I:518 , HOH I:521 , HOH I:525 , HOH I:531 , HOH I:616 , HOH I:662 , HOH I:744 , GLU J:49 , TRP J:55 , ASN J:111BINDING SITE FOR RESIDUE CAP I 446
19CC1SOFTWAREASN I:111 , LYS J:163 , KCX J:189 , ASP J:191 , GLU J:192 , CAP J:446BINDING SITE FOR RESIDUE MG J 445
20CC2SOFTWAREGLU I:49 , TRP I:55 , ASN I:111 , HOH I:603 , LYS J:163 , LYS J:165 , KCX J:189 , ASP J:191 , GLU J:192 , HIS J:281 , ARG J:282 , HIS J:314 , LYS J:322 , LEU J:323 , SER J:367 , GLY J:368 , GLY J:369 , GLN J:389 , GLY J:391 , GLY J:392 , MG J:445 , HOH J:502 , HOH J:546 , HOH J:566 , HOH J:580 , HOH J:586 , HOH J:587 , HOH J:633BINDING SITE FOR RESIDUE CAP J 446

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3A12)

(-) Cis Peptide Bonds  (10, 10)

Asymmetric Unit
No.Residues
1Lys A:163 -Pro A:164
2Lys B:163 -Pro B:164
3Lys C:163 -Pro C:164
4Lys D:163 -Pro D:164
5Lys E:163 -Pro E:164
6Lys F:163 -Pro F:164
7Lys G:163 -Pro G:164
8Lys H:163 -Pro H:164
9Lys I:163 -Pro I:164
10Lys J:163 -Pro J:164

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3A12)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3A12)

(-) Exons   (0, 0)

(no "Exon" information available for 3A12)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:437
 aligned with RBL_THEKO | O93627 from UniProtKB/Swiss-Prot  Length:444

    Alignment length:437
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       
            RBL_THEKO     8 IYDYYVDKGYEPSKKRDIIAVFRVTPAEGYTIEQAAGAVAAESSTGTWTTLYPWYEQERWADLSAKAYDFHDMGDGSWIVRIAYPFHAFEEANLPGLLASIAGNIFGMKRVKGLRLEDLYFPEKLIREFDGPAFGIEGVRKMLEIKDRPIYGVVPKPKVGYSPEEFEKLAYDLLSNGADYMKDDENLTSPWYNRFEERAEIMAKIIDKVENETGEKKTWFANITADLLEMEQRLEVLADLGLKHAMVDVVITGWGALRYIRDLAADYGLAIHGHRAMHAAFTRNPYHGISMFVLAKLYRLIGIDQLHVGTAGAGKLEGGKWDVIQNARILRESHYKPDENDVFHLEQKFYSIKAAFPTSSGGLHPGNIQPVIEALGTDIVLQLGGGTLGHPDGPAAGARAVRQAIDAIMQGIPLDEYAKTHKELARALEKWGHVTPV 444
               SCOP domains d3a12a1 A:8-136 Ribulose 1,5-bisphosphate carboxylase-oxygenase                                                                  d3a12a2 A:137-444 Ribulose 1,5-bisphosphate carboxylase-oxygenase                                                                                                                                                                                                                                                    SCOP domains
               CATH domains 3a12A01 A:8-136  [code=3.30.70.150, no name defined]                                                                             3a12A02 A:137-438 Rubisco                                                                                                                                                                                                                                                                                     ------ CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhh..........eeeeeeeeee....hhhhhhhhhhhhh............hhhhhhhh..eeeeeee.....eeeeeeee.hhh...hhhhhhhhhhhhhhhh..eeeeeeeeee.hhhhhh......hhhhhhhhhhh.....eeee........hhhhhhhhhhhhhhh...eee...........hhhhhhhhhhhhhhhhhhhhh...eeeee...hhhhhhhhhhhhhhh...eeeeehhhhhhhhhhhhhhhhhhhh.eeeee...hhhhhh....eehhhhhhhhhhhhh..eee...........hhhhhhhhhhhhhh.ee...........ee.......eeeee...hhhhhhhhhhhhh...eee.hhhhhh...hhhhhhhhhhhhhhhhhhh.hhhhhhh.hhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3a12 A   8 IYDYYVDKGYEPSKKRDIIAVFRVTPAEGYTIEQAAGAVAAESSTGTWTTLYPWYEQERWADLSAKAYDFHDMGDGSWIVRIAYPFHAFEEANLPGLLASIAGNIFGMKRVKGLRLEDLYFPEKLIREFDGPAFGIEGVRKMLEIKDRPIYGVVPKPKVGYSPEEFEKLAYDLLSNGADYMkDDENLTSPWYNRFEERAEIMAKIIDKVENETGEKKTWFANITADLLEMEQRLEVLADLGLKHAMVDVVITGWGALRYIRDLAADYGLAIHGHRAMHAAFTRNPYHGISMFVLAKLYRLIGIDQLHVGTAGAGKLEGGKWDVIQNARILRESHYKPDENDVFHLEQKFYSIKAAFPTSSGGLHPGNIQPVIEALGTDIVLQLGGGTLGHPDGPAAGARAVRQAIDAIMQGIPLDEYAKTHKELARALEKWGHVTPV 444
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187 |     197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       
                                                                                                                                                                                                               189-KCX                                                                                                                                                                                                                                                           


Chain B from PDB  Type:PROTEIN  Length:438
 aligned with RBL_THEKO | O93627 from UniProtKB/Swiss-Prot  Length:444

    Alignment length:438
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436        
            RBL_THEKO     7 TIYDYYVDKGYEPSKKRDIIAVFRVTPAEGYTIEQAAGAVAAESSTGTWTTLYPWYEQERWADLSAKAYDFHDMGDGSWIVRIAYPFHAFEEANLPGLLASIAGNIFGMKRVKGLRLEDLYFPEKLIREFDGPAFGIEGVRKMLEIKDRPIYGVVPKPKVGYSPEEFEKLAYDLLSNGADYMKDDENLTSPWYNRFEERAEIMAKIIDKVENETGEKKTWFANITADLLEMEQRLEVLADLGLKHAMVDVVITGWGALRYIRDLAADYGLAIHGHRAMHAAFTRNPYHGISMFVLAKLYRLIGIDQLHVGTAGAGKLEGGKWDVIQNARILRESHYKPDENDVFHLEQKFYSIKAAFPTSSGGLHPGNIQPVIEALGTDIVLQLGGGTLGHPDGPAAGARAVRQAIDAIMQGIPLDEYAKTHKELARALEKWGHVTPV 444
               SCOP domains d3a12b1 B:7-136 Ribulose 1,5-bisphosphate carboxylase-oxygenase                                                                   d3a12b2 B:137-444 Ribulose 1,5-bisphosphate carboxylase-oxygenase                                                                                                                                                                                                                                                    SCOP domains
               CATH domains 3a12B01 B:7-136  [code=3.30.70.150, no name defined]                                                                              3a12B02 B:137-438 Rubisco                                                                                                                                                                                                                                                                                     ------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhh..........eeeeeeeeee....hhhhhhhhhhhhhh...........hhhhhhhhh.eeeeeee.....eeeeeeee.hhh...hhhhhhhhhhhhhhhh..eeeeeeeeee.hhhhhh......hhhhhhhhhhh.....eeee........hhhhhhhhhhhhhhh...eee...........hhhhhhhhhhhhhhhhhhhhh...eeeee...hhhhhhhhhhhhhhh...eeeeehhhhhhhhhhhhhhhhhhh..eeeee...hhhhhh....eehhhhhhhhhhhhh..eee...........hhhhhhhhhhhhhh.ee...........ee.......eeeee...hhhhhhhhhhhhh...eee.hhhhhh...hhhhhhhhhhhhhhhhhhh.hhhhhh..hhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3a12 B   7 TIYDYYVDKGYEPSKKRDIIAVFRVTPAEGYTIEQAAGAVAAESSTGTWTTLYPWYEQERWADLSAKAYDFHDMGDGSWIVRIAYPFHAFEEANLPGLLASIAGNIFGMKRVKGLRLEDLYFPEKLIREFDGPAFGIEGVRKMLEIKDRPIYGVVPKPKVGYSPEEFEKLAYDLLSNGADYMkDDENLTSPWYNRFEERAEIMAKIIDKVENETGEKKTWFANITADLLEMEQRLEVLADLGLKHAMVDVVITGWGALRYIRDLAADYGLAIHGHRAMHAAFTRNPYHGISMFVLAKLYRLIGIDQLHVGTAGAGKLEGGKWDVIQNARILRESHYKPDENDVFHLEQKFYSIKAAFPTSSGGLHPGNIQPVIEALGTDIVLQLGGGTLGHPDGPAAGARAVRQAIDAIMQGIPLDEYAKTHKELARALEKWGHVTPV 444
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186  |    196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436        
                                                                                                                                                                                                                189-KCX                                                                                                                                                                                                                                                           


Chain C from PDB  Type:PROTEIN  Length:438
 aligned with RBL_THEKO | O93627 from UniProtKB/Swiss-Prot  Length:444

    Alignment length:438
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436        
            RBL_THEKO     7 TIYDYYVDKGYEPSKKRDIIAVFRVTPAEGYTIEQAAGAVAAESSTGTWTTLYPWYEQERWADLSAKAYDFHDMGDGSWIVRIAYPFHAFEEANLPGLLASIAGNIFGMKRVKGLRLEDLYFPEKLIREFDGPAFGIEGVRKMLEIKDRPIYGVVPKPKVGYSPEEFEKLAYDLLSNGADYMKDDENLTSPWYNRFEERAEIMAKIIDKVENETGEKKTWFANITADLLEMEQRLEVLADLGLKHAMVDVVITGWGALRYIRDLAADYGLAIHGHRAMHAAFTRNPYHGISMFVLAKLYRLIGIDQLHVGTAGAGKLEGGKWDVIQNARILRESHYKPDENDVFHLEQKFYSIKAAFPTSSGGLHPGNIQPVIEALGTDIVLQLGGGTLGHPDGPAAGARAVRQAIDAIMQGIPLDEYAKTHKELARALEKWGHVTPV 444
               SCOP domains d3a12c1 C:7-136 Ribulose 1,5-bisphosphate carboxylase-oxygenase                                                                   d3a12c2 C:137-444 Ribulose 1,5-bisphosphate carboxylase-oxygenase                                                                                                                                                                                                                                                    SCOP domains
               CATH domains 3a12C01 C:7-136  [code=3.30.70.150, no name defined]                                                                              3a12C02 C:137-438 Rubisco                                                                                                                                                                                                                                                                                     ------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhh..........eeeeeeeeee....hhhhhhhhhhhhh............hhhhhhhhh.eeeeeee.....eeeeeeee.hhh...hhhhhhhhhhhhhhhh..eeeeeeeeee.hhhhhh......hhhhhhhhhhh.....eeee........hhhhhhhhhhhhhhh...eee...........hhhhhhhhhhhhhhhhhhhhh...eeeee...hhhhhhhhhhhhhhhh..eeeeehhhhhhhhhhhhhhhhhhh..eeeee...hhhhhh....eehhhhhhhhhhhhh..eee...........hhhhhhhhhhhhhh.ee...........ee.......eeeee...hhhhhhhhhhhhh...eee.hhhhhh...hhhhhhhhhhhhhhhhhh..hhhhhh..hhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3a12 C   7 TIYDYYVDKGYEPSKKRDIIAVFRVTPAEGYTIEQAAGAVAAESSTGTWTTLYPWYEQERWADLSAKAYDFHDMGDGSWIVRIAYPFHAFEEANLPGLLASIAGNIFGMKRVKGLRLEDLYFPEKLIREFDGPAFGIEGVRKMLEIKDRPIYGVVPKPKVGYSPEEFEKLAYDLLSNGADYMkDDENLTSPWYNRFEERAEIMAKIIDKVENETGEKKTWFANITADLLEMEQRLEVLADLGLKHAMVDVVITGWGALRYIRDLAADYGLAIHGHRAMHAAFTRNPYHGISMFVLAKLYRLIGIDQLHVGTAGAGKLEGGKWDVIQNARILRESHYKPDENDVFHLEQKFYSIKAAFPTSSGGLHPGNIQPVIEALGTDIVLQLGGGTLGHPDGPAAGARAVRQAIDAIMQGIPLDEYAKTHKELARALEKWGHVTPV 444
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186  |    196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436        
                                                                                                                                                                                                                189-KCX                                                                                                                                                                                                                                                           


Chain D from PDB  Type:PROTEIN  Length:436
 aligned with RBL_THEKO | O93627 from UniProtKB/Swiss-Prot  Length:444

    Alignment length:436
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438      
            RBL_THEKO     9 YDYYVDKGYEPSKKRDIIAVFRVTPAEGYTIEQAAGAVAAESSTGTWTTLYPWYEQERWADLSAKAYDFHDMGDGSWIVRIAYPFHAFEEANLPGLLASIAGNIFGMKRVKGLRLEDLYFPEKLIREFDGPAFGIEGVRKMLEIKDRPIYGVVPKPKVGYSPEEFEKLAYDLLSNGADYMKDDENLTSPWYNRFEERAEIMAKIIDKVENETGEKKTWFANITADLLEMEQRLEVLADLGLKHAMVDVVITGWGALRYIRDLAADYGLAIHGHRAMHAAFTRNPYHGISMFVLAKLYRLIGIDQLHVGTAGAGKLEGGKWDVIQNARILRESHYKPDENDVFHLEQKFYSIKAAFPTSSGGLHPGNIQPVIEALGTDIVLQLGGGTLGHPDGPAAGARAVRQAIDAIMQGIPLDEYAKTHKELARALEKWGHVTPV 444
               SCOP domains d3a12d1 D:9-136 Ribulose 1,5-bisphosphate carboxylase-oxygenase                                                                 d3a12d2 D:137-444 Ribulose 1,5-bisphosphate carboxylase-oxygenase                                                                                                                                                                                                                                                    SCOP domains
               CATH domains 3a12D01 D:9-136  [code=3.30.70.150, no name defined]                                                                            3a12D02 D:137-438 Rubisco                                                                                                                                                                                                                                                                                     ------ CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhh..........eeeeeeeeee....hhhhhhhhhhhhh............hhhhhhhhh.eeeeeee.....eeeeeeee.hhh...hhhhhhhhhhhhhhhh..eeeeeeeeee.hhhhhh......hhhhhhhhhhh.....eeee........hhhhhhhhhhhhhhh...eee...........hhhhhhhhhhhhhhhhhhhhh...eeeee...hhhhhhhhhhhhhhh...eeeeehhhhhhhhhhhhhhhhhhh..eeeee...hhhhhh....eehhhhhhhhhhhhh..eee...........hhhhhhhhhhhhhh.ee...........ee.......eeeee...hhhhhhhhhhhhh...eee.hhhhhh...hhhhhhhhhhhhhhhhhhh.hhhhhhh.hhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3a12 D   9 YDYYVDKGYEPSKKRDIIAVFRVTPAEGYTIEQAAGAVAAESSTGTWTTLYPWYEQERWADLSAKAYDFHDMGDGSWIVRIAYPFHAFEEANLPGLLASIAGNIFGMKRVKGLRLEDLYFPEKLIREFDGPAFGIEGVRKMLEIKDRPIYGVVPKPKVGYSPEEFEKLAYDLLSNGADYMkDDENLTSPWYNRFEERAEIMAKIIDKVENETGEKKTWFANITADLLEMEQRLEVLADLGLKHAMVDVVITGWGALRYIRDLAADYGLAIHGHRAMHAAFTRNPYHGISMFVLAKLYRLIGIDQLHVGTAGAGKLEGGKWDVIQNARILRESHYKPDENDVFHLEQKFYSIKAAFPTSSGGLHPGNIQPVIEALGTDIVLQLGGGTLGHPDGPAAGARAVRQAIDAIMQGIPLDEYAKTHKELARALEKWGHVTPV 444
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188|      198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438      
                                                                                                                                                                                                              189-KCX                                                                                                                                                                                                                                                           


Chain E from PDB  Type:PROTEIN  Length:436
 aligned with RBL_THEKO | O93627 from UniProtKB/Swiss-Prot  Length:444

    Alignment length:438
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436        
            RBL_THEKO     7 TIYDYYVDKGYEPSKKRDIIAVFRVTPAEGYTIEQAAGAVAAESSTGTWTTLYPWYEQERWADLSAKAYDFHDMGDGSWIVRIAYPFHAFEEANLPGLLASIAGNIFGMKRVKGLRLEDLYFPEKLIREFDGPAFGIEGVRKMLEIKDRPIYGVVPKPKVGYSPEEFEKLAYDLLSNGADYMKDDENLTSPWYNRFEERAEIMAKIIDKVENETGEKKTWFANITADLLEMEQRLEVLADLGLKHAMVDVVITGWGALRYIRDLAADYGLAIHGHRAMHAAFTRNPYHGISMFVLAKLYRLIGIDQLHVGTAGAGKLEGGKWDVIQNARILRESHYKPDENDVFHLEQKFYSIKAAFPTSSGGLHPGNIQPVIEALGTDIVLQLGGGTLGHPDGPAAGARAVRQAIDAIMQGIPLDEYAKTHKELARALEKWGHVTPV 444
               SCOP domains d3a12e1 E:7-136 Ribulose 1,5-bisphosphate carboxylase-oxygenase                                                                   d3a12e2 E:137-444 Ribulose 1,5-bisphosphate carboxylase-oxygenase                                                                                                                                                                                                                                                    SCOP domains
               CATH domains 3a12E01 E:7-136  [code=3.30.70.150, no name defined]                                                                              3a12E02 E:137-438 Rubisco                                                                                                                                                                                                                                                                                     ------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhh..........eeeeeeeeee....hhhhhhhhhhhhh............hhhhhhhhh.eeeeeee.....eeeeeeee.hhh...hhhhhhhhhhhhhhhh..eeeeeeeeee.hhhhhh......hhhhhhhhhhh.....eeee........hhhhhhhhhhhhhhh...eee...........hhhhhhhhhhhhhhhhhhhhh...eeeee...hhhhhhhhhhhhhhhh..eeeeehhhhhhhhhhhhhhhhhhh..eeeee...hhhhhh....eehhhhhhhhhhhhh..eee...........hhhhhhhhhhhhhh.ee...........ee.......eeeee.......hhhhhhhhh...eee.hhhhhh...hhhhhhhhhhhhhhhhhh..hhhhhh--hhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3a12 E   7 TIYDYYVDKGYEPSKKRDIIAVFRVTPAEGYTIEQAAGAVAAESSTGTWTTLYPWYEQERWADLSAKAYDFHDMGDGSWIVRIAYPFHAFEEANLPGLLASIAGNIFGMKRVKGLRLEDLYFPEKLIREFDGPAFGIEGVRKMLEIKDRPIYGVVPKPKVGYSPEEFEKLAYDLLSNGADYMkDDENLTSPWYNRFEERAEIMAKIIDKVENETGEKKTWFANITADLLEMEQRLEVLADLGLKHAMVDVVITGWGALRYIRDLAADYGLAIHGHRAMHAAFTRNPYHGISMFVLAKLYRLIGIDQLHVGTAGAGKLEGGKWDVIQNARILRESHYKPDENDVFHLEQKFYSIKAAFPTSSGGLHPGNIQPVIEALGTDIVLQLGGGTLGHPDGPAAGARAVRQAIDAIMQGIPLDEYA--HKELARALEKWGHVTPV 444
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186  |    196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416        |- |     436        
                                                                                                                                                                                                                189-KCX                                                                                                                                                                                                                                     425  |                
                                                                                                                                                                                                                                                                                                                                                                                                                                                               428                


Chain F from PDB  Type:PROTEIN  Length:435
 aligned with RBL_THEKO | O93627 from UniProtKB/Swiss-Prot  Length:444

    Alignment length:436
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438      
            RBL_THEKO     9 YDYYVDKGYEPSKKRDIIAVFRVTPAEGYTIEQAAGAVAAESSTGTWTTLYPWYEQERWADLSAKAYDFHDMGDGSWIVRIAYPFHAFEEANLPGLLASIAGNIFGMKRVKGLRLEDLYFPEKLIREFDGPAFGIEGVRKMLEIKDRPIYGVVPKPKVGYSPEEFEKLAYDLLSNGADYMKDDENLTSPWYNRFEERAEIMAKIIDKVENETGEKKTWFANITADLLEMEQRLEVLADLGLKHAMVDVVITGWGALRYIRDLAADYGLAIHGHRAMHAAFTRNPYHGISMFVLAKLYRLIGIDQLHVGTAGAGKLEGGKWDVIQNARILRESHYKPDENDVFHLEQKFYSIKAAFPTSSGGLHPGNIQPVIEALGTDIVLQLGGGTLGHPDGPAAGARAVRQAIDAIMQGIPLDEYAKTHKELARALEKWGHVTPV 444
               SCOP domains d3a12f1 F:9-136 Ribulose 1,5-bisphosphate carboxy lase-oxygenase                                                                d3a12f2 F:137-444 Ribulose 1,5-bisphosphate carboxylase-oxygenase                                                                                                                                                                                                                                                    SCOP domains
               CATH domains 3a12F01 F:9-136  [code=3.30.70.150, no name defin ed]                                                                           3a12F02 F:137-438 Rubisco                                                                                                                                                                                                                                                                                     ------ CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhh..........eeeeeeeeee....hhhhhhhhhhhhh.......-....hhhhhhhhh.eeee........eeeeeeee.hhh...hhhhhhhhhhhhhhhh..eeeeeeeeee.hhhhhh......hhhhhhhhhhh.....eeee........hhhhhhhhhhhhhhh...eee...........hhhhhhhhhhhhhhhhhhhhh...eee.....hhhhhhhhhhhhhhhh..eeeeehhhhhhhhhhhhhhhhhhhh.eeeee...hhhhhh....eehhhhhhhhhhhhh..eee...........hhhhhhhhhhhhhh.ee...........ee.......eeeee...hhhhhhhhhhhhh...eee.hhhhhh...hhhhhhhhhhhhhhhhhh..hhhhhh..hhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3a12 F   9 YDYYVDKGYEPSKKRDIIAVFRVTPAEGYTIEQAAGAVAAESSTGTWTT-YPWYEQERWADLSAKAYDFHDMGDGSWIVRIAYPFHAFEEANLPGLLASIAGNIFGMKRVKGLRLEDLYFPEKLIREFDGPAFGIEGVRKMLEIKDRPIYGVVPKPKVGYSPEEFEKLAYDLLSNGADYMkDDENLTSPWYNRFEERAEIMAKIIDKVENETGEKKTWFANITADLLEMEQRLEVLADLGLKHAMVDVVITGWGALRYIRDLAADYGLAIHGHRAMHAAFTRNPYHGISMFVLAKLYRLIGIDQLHVGTAGAGKLEGGKWDVIQNARILRESHYKPDENDVFHLEQKFYSIKAAFPTSSGGLHPGNIQPVIEALGTDIVLQLGGGTLGHPDGPAAGARAVRQAIDAIMQGIPLDEYAKTHKELARALEKWGHVTPV 444
                                    18        28        38        48        |-|       68        78        88        98       108       118       128       138       148       158       168       178       188|      198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438      
                                                                           57 |                                                                                                                               189-KCX                                                                                                                                                                                                                                                           
                                                                             59                                                                                                                                                                                                                                                                                                                                                                                                 


Chain G from PDB  Type:PROTEIN  Length:436
 aligned with RBL_THEKO | O93627 from UniProtKB/Swiss-Prot  Length:444

    Alignment length:436
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438      
            RBL_THEKO     9 YDYYVDKGYEPSKKRDIIAVFRVTPAEGYTIEQAAGAVAAESSTGTWTTLYPWYEQERWADLSAKAYDFHDMGDGSWIVRIAYPFHAFEEANLPGLLASIAGNIFGMKRVKGLRLEDLYFPEKLIREFDGPAFGIEGVRKMLEIKDRPIYGVVPKPKVGYSPEEFEKLAYDLLSNGADYMKDDENLTSPWYNRFEERAEIMAKIIDKVENETGEKKTWFANITADLLEMEQRLEVLADLGLKHAMVDVVITGWGALRYIRDLAADYGLAIHGHRAMHAAFTRNPYHGISMFVLAKLYRLIGIDQLHVGTAGAGKLEGGKWDVIQNARILRESHYKPDENDVFHLEQKFYSIKAAFPTSSGGLHPGNIQPVIEALGTDIVLQLGGGTLGHPDGPAAGARAVRQAIDAIMQGIPLDEYAKTHKELARALEKWGHVTPV 444
               SCOP domains d3a12g1 G:9-136 Ribulose 1,5-bisphosphate carboxylase-oxygenase                                                                 d3a12g2 G:137-444 Ribulose 1,5-bisphosphate carboxylase-oxygenase                                                                                                                                                                                                                                                    SCOP domains
               CATH domains 3a12G01 G:9-136  [code=3.30.70.150, no name defined]                                                                            3a12G02 G:137-438 Rubisco                                                                                                                                                                                                                                                                                     ------ CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhh..........eeeeeeeeee....hhhhhhhhhhhhh............hhhhhhhhh.eeeeeee.....eeeeeeee.hhh...hhhhhhhhhhhhhhhh..eeeeeeeeee.hhhhhh......hhhhhhhhhhh.....eeee........hhhhhhhhhhhhhhh...eee...........hhhhhhhhhhhhhhhhhhhhh...eeeee...hhhhhhhhhhhhhhh...eeeeehhhhhhhhhhhhhhhhhhh..eeeee...hhhhhh....eehhhhhhhhhhhhh..eee...........hhhhhhhhhhhhhh.ee...........ee.......eeeee...hhhhhhhhhhhhh...eee.hhhhhh...hhhhhhhhhhhhhhhhhhh.hhhhhh..hhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3a12 G   9 YDYYVDKGYEPSKKRDIIAVFRVTPAEGYTIEQAAGAVAAESSTGTWTTLYPWYEQERWADLSAKAYDFHDMGDGSWIVRIAYPFHAFEEANLPGLLASIAGNIFGMKRVKGLRLEDLYFPEKLIREFDGPAFGIEGVRKMLEIKDRPIYGVVPKPKVGYSPEEFEKLAYDLLSNGADYMkDDENLTSPWYNRFEERAEIMAKIIDKVENETGEKKTWFANITADLLEMEQRLEVLADLGLKHAMVDVVITGWGALRYIRDLAADYGLAIHGHRAMHAAFTRNPYHGISMFVLAKLYRLIGIDQLHVGTAGAGKLEGGKWDVIQNARILRESHYKPDENDVFHLEQKFYSIKAAFPTSSGGLHPGNIQPVIEALGTDIVLQLGGGTLGHPDGPAAGARAVRQAIDAIMQGIPLDEYAKTHKELARALEKWGHVTPV 444
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188|      198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438      
                                                                                                                                                                                                              189-KCX                                                                                                                                                                                                                                                           


Chain H from PDB  Type:PROTEIN  Length:437
 aligned with RBL_THEKO | O93627 from UniProtKB/Swiss-Prot  Length:444

    Alignment length:437
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       
            RBL_THEKO     8 IYDYYVDKGYEPSKKRDIIAVFRVTPAEGYTIEQAAGAVAAESSTGTWTTLYPWYEQERWADLSAKAYDFHDMGDGSWIVRIAYPFHAFEEANLPGLLASIAGNIFGMKRVKGLRLEDLYFPEKLIREFDGPAFGIEGVRKMLEIKDRPIYGVVPKPKVGYSPEEFEKLAYDLLSNGADYMKDDENLTSPWYNRFEERAEIMAKIIDKVENETGEKKTWFANITADLLEMEQRLEVLADLGLKHAMVDVVITGWGALRYIRDLAADYGLAIHGHRAMHAAFTRNPYHGISMFVLAKLYRLIGIDQLHVGTAGAGKLEGGKWDVIQNARILRESHYKPDENDVFHLEQKFYSIKAAFPTSSGGLHPGNIQPVIEALGTDIVLQLGGGTLGHPDGPAAGARAVRQAIDAIMQGIPLDEYAKTHKELARALEKWGHVTPV 444
               SCOP domains d3a12h1 H:8-136 Ribulose 1,5-bisphosphate carboxylase-oxygenase                                                                  d3a12h2 H:137-444 Ribulose 1,5-bisphosphate carboxylase-oxygenase                                                                                                                                                                                                                                                    SCOP domains
               CATH domains 3a12H01 H:8-136  [code=3.30.70.150, no name defined]                                                                             3a12H02 H:137-438 Rubisco                                                                                                                                                                                                                                                                                     ------ CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhh..........eeeeeeeeee....hhhhhhhhhhhhh............hhhhhhhhh.eeeeeee.....eeeeeeee.hhh...hhhhhhhhhhhhhhhh..eeeeeeeeee.hhhhhh......hhhhhhhhhhh.....eeee........hhhhhhhhhhhhhhh...eee...........hhhhhhhhhhhhhhhhhhhhh...eee.....hhhhhhhhhhhhhhh...eeeeehhhhhhhhhhhhhhhhhhh..eeeee...hhhhhh....eehhhhhhhhhhhhh..eee...........hhhhhhhhhhhhhh.ee...........ee.......eeeee...hhhhhhhhhhhhh...eee.hhhhhh...hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3a12 H   8 IYDYYVDKGYEPSKKRDIIAVFRVTPAEGYTIEQAAGAVAAESSTGTWTTLYPWYEQERWADLSAKAYDFHDMGDGSWIVRIAYPFHAFEEANLPGLLASIAGNIFGMKRVKGLRLEDLYFPEKLIREFDGPAFGIEGVRKMLEIKDRPIYGVVPKPKVGYSPEEFEKLAYDLLSNGADYMkDDENLTSPWYNRFEERAEIMAKIIDKVENETGEKKTWFANITADLLEMEQRLEVLADLGLKHAMVDVVITGWGALRYIRDLAADYGLAIHGHRAMHAAFTRNPYHGISMFVLAKLYRLIGIDQLHVGTAGAGKLEGGKWDVIQNARILRESHYKPDENDVFHLEQKFYSIKAAFPTSSGGLHPGNIQPVIEALGTDIVLQLGGGTLGHPDGPAAGARAVRQAIDAIMQGIPLDEYAKTHKELARALEKWGHVTPV 444
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187 |     197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       
                                                                                                                                                                                                               189-KCX                                                                                                                                                                                                                                                           


Chain I from PDB  Type:PROTEIN  Length:436
 aligned with RBL_THEKO | O93627 from UniProtKB/Swiss-Prot  Length:444

    Alignment length:436
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438      
            RBL_THEKO     9 YDYYVDKGYEPSKKRDIIAVFRVTPAEGYTIEQAAGAVAAESSTGTWTTLYPWYEQERWADLSAKAYDFHDMGDGSWIVRIAYPFHAFEEANLPGLLASIAGNIFGMKRVKGLRLEDLYFPEKLIREFDGPAFGIEGVRKMLEIKDRPIYGVVPKPKVGYSPEEFEKLAYDLLSNGADYMKDDENLTSPWYNRFEERAEIMAKIIDKVENETGEKKTWFANITADLLEMEQRLEVLADLGLKHAMVDVVITGWGALRYIRDLAADYGLAIHGHRAMHAAFTRNPYHGISMFVLAKLYRLIGIDQLHVGTAGAGKLEGGKWDVIQNARILRESHYKPDENDVFHLEQKFYSIKAAFPTSSGGLHPGNIQPVIEALGTDIVLQLGGGTLGHPDGPAAGARAVRQAIDAIMQGIPLDEYAKTHKELARALEKWGHVTPV 444
               SCOP domains d3a12i1 I:9-136 Ribulose 1,5-bisphosphate carboxylase-oxygenase                                                                 d3a12i2 I:137-444 Ribulose 1,5-bisphosphate carboxylase-oxygenase                                                                                                                                                                                                                                                    SCOP domains
               CATH domains 3a12I01 I:9-136  [code=3.30.70.150, no name defined]                                                                            3a12I02 I:137-438 Rubisco                                                                                                                                                                                                                                                                                     ------ CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhh..........eeeeeeeeee....hhhhhhhhhhhhh............hhhhhhhhh.eeeeeee.....eeeeeeee.hhh...hhhhhhhhhhhhhhhh..eeeeeeeeee.hhhhhh......hhhhhhhhhhh.....eeee........hhhhhhhhhhhhhhh...eee...........hhhhhhhhhhhhhhhhhhhhh...eeeee...hhhhhhhhhhhhhhhh..eeeeehhhhhhhhhhhhhhhhhhh..eeeee...hhhhhh....eehhhhhhhhhhhhh..eee...........hhhhhhhhhhhhhh.ee...........ee.......eeeee...hhhhhhhhhhhhh...eee.hhhhhh...hhhhhhhhhhhhhhhhhhh.hhhhhhh.hhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3a12 I   9 YDYYVDKGYEPSKKRDIIAVFRVTPAEGYTIEQAAGAVAAESSTGTWTTLYPWYEQERWADLSAKAYDFHDMGDGSWIVRIAYPFHAFEEANLPGLLASIAGNIFGMKRVKGLRLEDLYFPEKLIREFDGPAFGIEGVRKMLEIKDRPIYGVVPKPKVGYSPEEFEKLAYDLLSNGADYMkDDENLTSPWYNRFEERAEIMAKIIDKVENETGEKKTWFANITADLLEMEQRLEVLADLGLKHAMVDVVITGWGALRYIRDLAADYGLAIHGHRAMHAAFTRNPYHGISMFVLAKLYRLIGIDQLHVGTAGAGKLEGGKWDVIQNARILRESHYKPDENDVFHLEQKFYSIKAAFPTSSGGLHPGNIQPVIEALGTDIVLQLGGGTLGHPDGPAAGARAVRQAIDAIMQGIPLDEYAKTHKELARALEKWGHVTPV 444
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188|      198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438      
                                                                                                                                                                                                              189-KCX                                                                                                                                                                                                                                                           


Chain J from PDB  Type:PROTEIN  Length:437
 aligned with RBL_THEKO | O93627 from UniProtKB/Swiss-Prot  Length:444

    Alignment length:437
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       
            RBL_THEKO     8 IYDYYVDKGYEPSKKRDIIAVFRVTPAEGYTIEQAAGAVAAESSTGTWTTLYPWYEQERWADLSAKAYDFHDMGDGSWIVRIAYPFHAFEEANLPGLLASIAGNIFGMKRVKGLRLEDLYFPEKLIREFDGPAFGIEGVRKMLEIKDRPIYGVVPKPKVGYSPEEFEKLAYDLLSNGADYMKDDENLTSPWYNRFEERAEIMAKIIDKVENETGEKKTWFANITADLLEMEQRLEVLADLGLKHAMVDVVITGWGALRYIRDLAADYGLAIHGHRAMHAAFTRNPYHGISMFVLAKLYRLIGIDQLHVGTAGAGKLEGGKWDVIQNARILRESHYKPDENDVFHLEQKFYSIKAAFPTSSGGLHPGNIQPVIEALGTDIVLQLGGGTLGHPDGPAAGARAVRQAIDAIMQGIPLDEYAKTHKELARALEKWGHVTPV 444
               SCOP domains d3a12j1 J:8-136 Ribulose 1,5-bisphosphate carboxylase-oxygenase                                                                  d3a12j2 J:137-444 Ribulose 1,5-bisphosphate carboxylase-oxygenase                                                                                                                                                                                                                                                    SCOP domains
               CATH domains 3a12J01 J:8-136  [code=3.30.70.150, no name defined]                                                                             3a12J02 J:137-438 Rubisco                                                                                                                                                                                                                                                                                     ------ CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhh..........eeeeeeeeee....hhhhhhhhhhhhh............hhhhhhhhh.eeeeeee.....eeeeeeee.hhh...hhhhhhhhhhhhhhhh..eeeeeeeeee.hhhhhh......hhhhhhhhhhh.....eeee........hhhhhhhhhhhhhhh...eee...........hhhhhhhhhhhhhhhhhhhhh...eee.....hhhhhhhhhhhhhhh...eeeeehhhhhhhhhhhhhhhhhhh..eeeee...hhhhhh....eehhhhhhhhhhhhh..eee...........hhhhhhhhhhhhhh.ee...........ee.......eeeee.......hhhhhhhhh...eee.hhhhhh...hhhhhhhhhhhhhhhhhhh.hhhhhh..hhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3a12 J   8 IYDYYVDKGYEPSKKRDIIAVFRVTPAEGYTIEQAAGAVAAESSTGTWTTLYPWYEQERWADLSAKAYDFHDMGDGSWIVRIAYPFHAFEEANLPGLLASIAGNIFGMKRVKGLRLEDLYFPEKLIREFDGPAFGIEGVRKMLEIKDRPIYGVVPKPKVGYSPEEFEKLAYDLLSNGADYMkDDENLTSPWYNRFEERAEIMAKIIDKVENETGEKKTWFANITADLLEMEQRLEVLADLGLKHAMVDVVITGWGALRYIRDLAADYGLAIHGHRAMHAAFTRNPYHGISMFVLAKLYRLIGIDQLHVGTAGAGKLEGGKWDVIQNARILRESHYKPDENDVFHLEQKFYSIKAAFPTSSGGLHPGNIQPVIEALGTDIVLQLGGGTLGHPDGPAAGARAVRQAIDAIMQGIPLDEYAKTHKELARALEKWGHVTPV 444
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187 |     197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       
                                                                                                                                                                                                               189-KCX
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 20)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (2, 20)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3A12)

(-) Gene Ontology  (8, 8)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H,I,J   (RBL_THEKO | O93627)
molecular function
    GO:0016829    lyase activity    Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring.
    GO:0000287    magnesium ion binding    Interacting selectively and non-covalently with magnesium (Mg) ions.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0016984    ribulose-bisphosphate carboxylase activity    Catalysis of the reaction: D-ribulose 1,5-bisphosphate + CO2 + H2O = 2 3-phospho-D-glycerate.
biological process
    GO:0006196    AMP catabolic process    The chemical reactions and pathways resulting in the breakdown of AMP, adenosine monophosphate.
    GO:0015977    carbon fixation    A metabolic process in which carbon (usually derived from carbon dioxide) is incorporated into organic compounds (usually carbohydrates).
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

 Visualization

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 Related Entries

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        RBL_THEKO | O93627: 1geh 3a13 3kdn 3kdo 3wqp

(-) Related Entries Specified in the PDB File

1geh THE APO-FORM ABOUT THE SAME ENZYME
3a13