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(-) Description

Title :  CRYOEM MODEL OF COPA, THE COPPER TRANSPORTING ATPASE FROM ARCHAEOGLOBUS FULGIDUS
 
Authors :  C. -C. Wu, W. J. Rice, D. L. Stokes
Date :  25 Feb 08  (Deposition) - 26 May 09  (Release) - 19 Apr 17  (Revision)
Method :  ELECTRON MICROSCOPY
Resolution :  18.00
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F,G,H,I,J,K,L
Keywords :  Hydrolasep-Type Atpase, Cryo-Em, Helical Reconstruction, Membrane Protein, Copper Transporter, Metal Binding Domain, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  C. -C. Wu, W. J. Rice, D. L. Stokes
Structure Of A Copper Pump Suggests A Regulatory Role For Its Metal-Binding Domain.
Structure V. 16 976 2008
PubMed-ID: 18547529  |  Reference-DOI: 10.1016/J.STR.2008.02.025

(-) Compounds

Molecule 1 - POTENTIAL COPPER-TRANSPORTING ATPASE
    ChainsA
    EC Number3.6.3.4
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPET21A
    Expression System StrainBL21(DE3)
    Expression System Taxid469008
    Expression System VariantPLYSS
    Expression System Vector TypePLASMID
    FragmentRESIDUES 72-147
    Organism ScientificBACILLUS SUBTILIS
    Organism Taxid1423
    SynonymCOPA DELTA C
 
Molecule 2 - SARCOPLASMIC/ENDOPLASMIC RETICULUM CALCIUM ATPASE 1
    ChainsB
    EC Number3.6.3.8
    FragmentRESIDUES 36-77
    Organism CommonRABBIT
    Organism ScientificORYCTOLAGUS CUNICULUS
    Organism Taxid9986
    SynonymCA2+-ATPASE, SERCA1, COPA DELTA C
    TissueSKELETAL MUSCLE (WHITE)
 
Molecule 3 - SARCOPLASMIC/ENDOPLASMIC RETICULUM CALCIUM ATPASE 1
    ChainsC
    EC Number3.6.3.8
    FragmentRESIDUES 967-988
    Organism CommonRABBIT
    Organism ScientificORYCTOLAGUS CUNICULUS
    Organism Taxid9986
    SynonymCA2+-ATPASE, SERCA1, COPA DELTA C
    TissueSKELETAL MUSCLE (WHITE)
 
Molecule 4 - SARCOPLASMIC/ENDOPLASMIC RETICULUM CALCIUM ATPASE 1
    ChainsD
    EC Number3.6.3.8
    FragmentRESIDUES 832-854
    Organism CommonRABBIT
    Organism ScientificORYCTOLAGUS CUNICULUS
    Organism Taxid9986
    SynonymCA2+-ATPASE, SERCA1, COPA DELTA C
    TissueSKELETAL MUSCLE (WHITE)
 
Molecule 5 - SARCOPLASMIC/ENDOPLASMIC RETICULUM CALCIUM ATPASE 1
    ChainsE
    EC Number3.6.3.8
    FragmentRESIDUES 86-115
    Organism CommonRABBIT
    Organism ScientificORYCTOLAGUS CUNICULUS
    Organism Taxid9986
    SynonymCA2+-ATPASE, SERCA1, COPA DELTA C
    TissueSKELETAL MUSCLE (WHITE)
 
Molecule 6 - CATION-TRANSPORTING ATPASE, P-TYPE
    ChainsF
    EC Number3.6.3.4
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPPR-IBA1
    Expression System StrainBL21(DE3)
    Expression System Taxid469008
    Expression System Vector TypePLASMID
    FragmentRESIDUES 214-326
    Organism ScientificARCHAEOGLOBUS FULGIDUS
    Organism Taxid2234
    SynonymPACS, COPA DELTA C
 
Molecule 7 - SARCOPLASMIC/ENDOPLASMIC RETICULUM CALCIUM ATPASE 1
    ChainsG
    EC Number3.6.3.8
    FragmentRESIDUES 243-278
    Organism CommonRABBIT
    Organism ScientificORYCTOLAGUS CUNICULUS
    Organism Taxid9986
    SynonymCA2+-ATPASE, SERCA1, COPA DELTA C
    TissueSKELETAL MUSCLE (WHITE)
 
Molecule 8 - SARCOPLASMIC/ENDOPLASMIC RETICULUM CALCIUM ATPASE 1
    ChainsH
    EC Number3.6.3.8
    FragmentRESIDUES 289-336
    Organism CommonRABBIT
    Organism ScientificORYCTOLAGUS CUNICULUS
    Organism Taxid9986
    SynonymCA2+-ATPASE, SERCA1, COPA DELTA C
    TissueSKELETAL MUSCLE (WHITE)
 
Molecule 9 - CATION-TRANSPORTING ATPASE
    ChainsI
    EC Number3.6.3.4
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPPR-IBA1
    Expression System StrainBL21(DE3)
    Expression System Taxid469008
    Expression System VariantPLYSS
    Expression System Vector TypePLASMID
    Organism ScientificARCHAEOGLOBUS FULGIDUS
    Organism Taxid2234
    SynonymCOPA, COPA DELTA C
 
Molecule 10 - CATION-TRANSPORTING ATPASE
    ChainsJ
    EC Number3.6.3.4
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPPR-IBA1
    Expression System StrainBL21(DE3)
    Expression System Taxid469008
    Expression System VariantPLYSS
    Expression System Vector TypePLASMID
    FragmentRESIDUES 432-549
    Organism ScientificARCHAEOGLOBUS FULGIDUS
    Organism Taxid2234
    SynonymCOPA, COPA DELTA C
 
Molecule 11 - SARCOPLASMIC/ENDOPLASMIC RETICULUM CALCIUM ATPASE 1
    ChainsK
    EC Number3.6.3.8
    FragmentRESIDUES 749-780
    Organism CommonRABBIT
    Organism ScientificORYCTOLAGUS CUNICULUS
    Organism Taxid9986
    SynonymCA2+-ATPASE, SERCA1, COPA DELTA C
    TissueSKELETAL MUSCLE (WHITE)
 
Molecule 12 - SARCOPLASMIC/ENDOPLASMIC RETICULUM CALCIUM ATPASE 1
    ChainsL
    EC Number3.6.3.8
    FragmentRESIDUES 789-809
    Organism CommonRABBIT
    Organism ScientificORYCTOLAGUS CUNICULUS
    Organism Taxid9986
    SynonymCA2+-ATPASE, SERCA1, COPA DELTA C
    TissueSKELETAL MUSCLE (WHITE)

 Structural Features

(-) Chains, Units

  123456789101112
Asymmetric/Biological Unit ABCDEFGHIJKL

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 3)

Asymmetric/Biological Unit (1, 3)
No.NameCountTypeFull Name
1MSE3Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 2VOY)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2VOY)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2VOY)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2VOY)

(-) PROSITE Motifs  (3, 3)

Asymmetric/Biological Unit (3, 3)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1HMA_2PS50846 Heavy-metal-associated domain profile.COPA_BACSU6-72
74-140
  1-
A:4-70
2HMA_1PS01047 Heavy-metal-associated domain.COPA_BACSU11-40
79-108
  1-
A:9-38
3ATPASE_E1_E2PS00154 E1-E2 ATPases phosphorylation site.COPA_ARCFU424-430  1I:424-430

(-) Exons   (0, 0)

(no "Exon" information available for 2VOY)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:80
 aligned with COPA_BACSU | O32220 from UniProtKB/Swiss-Prot  Length:802

    Alignment length:86
                                    80        90       100       110       120       130       140       150      
           COPA_BACSU    71 VTEKAEFDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKEAVDKLGYKLKLKGEQDSEAAAKKKEER 156
               SCOP domains -------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------- CATH domains
               Pfam domains -----HMA-2voyA01 A:6-67                                            ------------------- Pfam domains
     Sec.struct. author (1) hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh------hhhh Sec.struct. author (1)
     Sec.struct. author (2) --eeeeeeee--------------------eee--------eeeeee-------------------eeee---------------- Sec.struct. author (2)
                 SAPs(SNPs) -------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) HM-HMA_2  PDB: A:4-70 UniProt: 74-140                                 ---------------- PROSITE (1)
                PROSITE (2) --------HMA_1  PDB: A:9-38            ------------------------------------------------ PROSITE (2)
                 Transcript -------------------------------------------------------------------------------------- Transcript
                 2voy A   1 VTEKAEFDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKEAVDKLGYKLKLKGEQDS------IEGR  80
                                    10        20        30        40        50        60        70     |   -  |   
                                                                                                      76     77   

Chain B from PDB  Type:PROTEIN  Length:42
 aligned with AT2A1_RABIT | P04191 from UniProtKB/Swiss-Prot  Length:1001

    Alignment length:42
                                    45        55        65        75  
          AT2A1_RABIT    36 YGHNELPAEEGKSLWELVIEQFEDLLVRILLLAACISFVLAW  77
               SCOP domains ------------------------------------------ SCOP domains
               CATH domains ------------------------------------------ CATH domains
               Pfam domains Cation_ATPase_N-2voyB01 B:36-72      ----- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------ PROSITE
                 Transcript ------------------------------------------ Transcript
                 2voy B  36 YGHNELPAEEGKSLWELVIEQFEDLLVRILLLAACISFVLAW  77
                                    45        55        65        75  

Chain C from PDB  Type:PROTEIN  Length:22
 aligned with AT2A1_RABIT | P04191 from UniProtKB/Swiss-Prot  Length:1001

    Alignment length:22
                                   976       986  
          AT2A1_RABIT   967 WLMVLKISLPVIGLDEILKFIA 988
               SCOP domains ---------------------- SCOP domains
               CATH domains ---------------------- CATH domains
               Pfam domains ---------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------- SAPs(SNPs)
                    PROSITE ---------------------- PROSITE
                 Transcript ---------------------- Transcript
                 2voy C 967 WLMVLKISLPVIGLDEILKFIA 988
                                   976       986  

Chain D from PDB  Type:PROTEIN  Length:23
 aligned with AT2A1_RABIT | P04191 from UniProtKB/Swiss-Prot  Length:1001

    Alignment length:23
                                   841       851   
          AT2A1_RABIT   832 WLFFRYMAIGGYVGAATVGAAAW 854
               SCOP domains ----------------------- SCOP domains
               CATH domains ----------------------- CATH domains
               Pfam domains ----------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------- SAPs(SNPs)
                    PROSITE ----------------------- PROSITE
                 Transcript ----------------------- Transcript
                 2voy D 832 WLFFRYMAIGGYVGAATVGAAAW 854
                                   841       851   

Chain E from PDB  Type:PROTEIN  Length:30
 aligned with AT2A1_RABIT | P04191 from UniProtKB/Swiss-Prot  Length:1001

    Alignment length:30
                                    95       105       115
          AT2A1_RABIT    86 TAFVEPFVILLILIANAIVGVWQERNAENA 115
               SCOP domains ------------------------------ SCOP domains
               CATH domains ------------------------------ CATH domains
               Pfam domains ------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------ PROSITE
                 Transcript ------------------------------ Transcript
                 2voy E  86 TAFVEPFVILLILIANAIVGVWQERNAENA 115
                                    95       105       115

Chain F from PDB  Type:PROTEIN  Length:113
 aligned with COPA_ARCFU | O29777 from UniProtKB/Swiss-Prot  Length:804

    Alignment length:113
                                   223       233       243       253       263       273       283       293       303       313       323   
           COPA_ARCFU   214 EAIKKLVGLQAKTAVVIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEGESYVDESMISGEPVPVLKSKGDEVFGATINNTGVLKIRATRVGGETLLAQIVKLVEDAMG 326
               SCOP domains ----------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains E1-E2_ATPase-2voyF01 F:214-326                                                                                    Pfam domains
     Sec.struct. author (1) hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author (1)
     Sec.struct. author (2) ------------eeeeee--eeeeee--------eeee--------eeeeee--eeee----------eee----ee----ee----eeeeeee------------------- Sec.struct. author (2)
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------- Transcript
                 2voy F 214 EAIKKLVGLQAKTAVVIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEGESYVDESMISGEPVPVLKSKGDEVFGATINNTGVLKIRATRVGGETLLAQIVKLVEDAMG 326
                                   223       233       243       253       263       273       283       293       303       313       323   

Chain G from PDB  Type:PROTEIN  Length:36
 aligned with AT2A1_RABIT | P04191 from UniProtKB/Swiss-Prot  Length:1001

    Alignment length:36
                                   252       262       272      
          AT2A1_RABIT   243 EQDKTPLQQKLDEFGEQLSKVISLICVAVWLINIGH 278
               SCOP domains ------------------------------------ SCOP domains
               CATH domains ------------------------------------ CATH domains
               Pfam domains ------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------ PROSITE
                 Transcript ------------------------------------ Transcript
                 2voy G 243 EQDKTPLQQKLDEFGEQLSKVISLICVAVWLINIGH 278
                                   252       262       272      

Chain H from PDB  Type:PROTEIN  Length:48
 aligned with AT2A1_RABIT | P04191 from UniProtKB/Swiss-Prot  Length:1001

    Alignment length:48
                                   298       308       318       328        
          AT2A1_RABIT   289 IRGAIYYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSL 336
               SCOP domains ------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------ CATH domains
           Pfam domains (1) E1-E2_ATPase-2voyH01 H:289-336                   Pfam domains (1)
           Pfam domains (2) E1-E2_ATPase-2voyH02 H:289-336                   Pfam domains (2)
           Pfam domains (3) E1-E2_ATPase-2voyH03 H:289-336                   Pfam domains (3)
     Sec.struct. author (1) hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author (1)
     Sec.struct. author (2) -------------------------------------------ee--- Sec.struct. author (2)
                 SAPs(SNPs) ------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------ Transcript
                 2voy H 289 IRGAIYYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSL 336
                                   298       308       318       328        

Chain I from PDB  Type:PROTEIN  Length:128
 aligned with COPA_ARCFU | O29777 from UniProtKB/Swiss-Prot  Length:804

    Alignment length:254
                                   419       429       439       449       459       469       479       489       499       509       519       529       539       549       559       569       579       589       599       609       619       629       639       649       659    
           COPA_ARCFU   410 DALEVAEKVTAVIFDKTGTLTKGKPEVTDLVPLNGDERELLRLAAIAERRSEHPIAEAIVKKALEHGIELGEPEKVEVIAGEGVVADGILVGNKRLMEDFGVAVSNEVELALEKLEREAKTAVIVARNGRVEGIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNLDLVIAEVLPHQKSEEVKKLQAKEVVAFVGDGINDAPALAQADLGIAVGSGSDVAVESGDIVLIRDDLRDVVAAIQ 663
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
     Sec.struct. author (1) hhhhhhhhhhhhhhhhhhhhh.----------------------------------------------------------------------------------------------------------------------...hhhhhhhhhh............hhhhhhhhhhhhh........hhhhhhhhhhhhh....eeeee....hhhhhhhh.eeeee.--------...eee....hhhhhhhhh Sec.struct. author (1)
     Sec.struct. author (2) ----------eeee------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Sec.struct. author (2)
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------ATPASE_----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2voy I 410 DALEVAEKVTAVIFDKTGTLTK----------------------------------------------------------------------------------------------------------------------LKESAKPAVQELKRmGIKVGmITGDNWRSAEAISRELNLDLVIAEVLPHQKSEEVKKLQAKEVVAFVGDGINDAPALAQADLGIAVG--------SGDIVLIRDDLRDVVAAIQ 663
                                   419       429 |       -         -         -         -         -         -         -         -         -         -         -         -|      559    |  569|      579       589       599       609       619       629      |  -     | 649       659    
                                               431                                                                                                                    550           564-MSE |                                                               636      645                  
                                                                                                                                                                                          570-MSE                                                                                         

Chain J from PDB  Type:PROTEIN  Length:118
 aligned with COPA_ARCFU | O29777 from UniProtKB/Swiss-Prot  Length:804

    Alignment length:118
                                   441       451       461       471       481       491       501       511       521       531       541        
           COPA_ARCFU   432 GKPEVTDLVPLNGDERELLRLAAIAERRSEHPIAEAIVKKALEHGIELGEPEKVEVIAGEGVVADGILVGNKRLMEDFGVAVSNEVELALEKLEREAKTAVIVARNGRVEGIIAVSDT 549
               SCOP domains ---------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains Hydrolase-2voyJ01 J:432-549                                                                                            Pfam domains
         Sec.struct. author ...eeeeeee...hhhhhhhhhhhhh....hhhhhhhhhhhhh..........eeee...eeee..eeee............hhhhhhhhhhhhh...eeeeeee..eeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------- Transcript
                 2voy J 432 GKPEVTDLVPLNGDERELLRLAAIAERRSEHPIAEAIVKKALEHGIELGEPEKVEVIAGEGVVADGILVGNKRLmEDFGVAVSNEVELALEKLEREAKTAVIVARNGRVEGIIAVSDT 549
                                   441       451       461       471       481       491       501    |  511       521       531       541        
                                                                                                    506-MSE                                       

Chain K from PDB  Type:PROTEIN  Length:32
 aligned with AT2A1_RABIT | P04191 from UniProtKB/Swiss-Prot  Length:1001

    Alignment length:32
                                   758       768       778  
          AT2A1_RABIT   749 EGRAIYNNMKQFIRYLISSNVGEVVCIFLTAA 780
               SCOP domains -------------------------------- SCOP domains
               CATH domains -------------------------------- CATH domains
               Pfam domains -------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------- PROSITE
                 Transcript -------------------------------- Transcript
                 2voy K 749 EGRAIYNNMKQFIRYLISSNVGEVVCIFLTAA 780
                                   758       768       778  

Chain L from PDB  Type:PROTEIN  Length:21
 aligned with AT2A1_RABIT | P04191 from UniProtKB/Swiss-Prot  Length:1001

    Alignment length:21
                                   798       808 
          AT2A1_RABIT   789 PVQLLWVNLVTDGLPATALGF 809
               SCOP domains --------------------- SCOP domains
               CATH domains --------------------- CATH domains
           Pfam domains (1) Cation_ATPase_C-2voyL Pfam domains (1)
           Pfam domains (2) Cation_ATPase_C-2voyL Pfam domains (2)
           Pfam domains (3) Cation_ATPase_C-2voyL Pfam domains (3)
         Sec.struct. author hhhhhhhhhh.hhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------- SAPs(SNPs)
                    PROSITE --------------------- PROSITE
                 Transcript --------------------- Transcript
                 2voy L 789 PVQLLWVNLVTDGLPATALGF 809
                                   798       808 

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2VOY)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2VOY)

(-) Pfam Domains  (6, 10)

Asymmetric/Biological Unit
(-)
Clan: HAD (186)

(-) Gene Ontology  (36, 59)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (COPA_BACSU | O32220)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0019829    cation-transporting ATPase activity    Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + cation(out) = ADP + phosphate + cation(in).
    GO:0005507    copper ion binding    Interacting selectively and non-covalently with copper (Cu) ions.
    GO:0043682    copper-transporting ATPase activity    Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + Cu2+ = ADP + phosphate + Cu2+, directly driving the transport of the copper ions across a membrane.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0042802    identical protein binding    Interacting selectively and non-covalently with an identical protein or proteins.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
biological process
    GO:0098655    cation transmembrane transport    A process in which a cation is transported from one side of a membrane to the other by means of some agent such as a transporter or pore.
    GO:0006812    cation transport    The directed movement of cations, atoms or small molecules with a net positive charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0035434    copper ion transmembrane transport    The directed movement of copper cation across a membrane.
    GO:0006825    copper ion transport    The directed movement of copper (Cu) ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0006811    ion transport    The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0030001    metal ion transport    The directed movement of metal ions, any metal ion with an electric charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0005887    integral component of plasma membrane    The component of the plasma membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0043231    intracellular membrane-bounded organelle    Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

Chain B,C,D,E,G,H,K,L   (AT2A1_RABIT | P04191)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0005509    calcium ion binding    Interacting selectively and non-covalently with calcium ions (Ca2+).
    GO:0005388    calcium-transporting ATPase activity    Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + Ca2+(cis) = ADP + phosphate + Ca2+(trans).
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
    GO:0070588    calcium ion transmembrane transport    A process in which a calcium ion is transported from one side of a membrane to the other by means of some agent such as a transporter or pore.
    GO:0006816    calcium ion transport    The directed movement of calcium (Ca) ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0006811    ion transport    The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0045988    negative regulation of striated muscle contraction    Any process that stops, prevents, or reduces the frequency, rate or extent of striated muscle contraction.
    GO:0031448    positive regulation of fast-twitch skeletal muscle fiber contraction    Any process that activates or increases the frequency, rate or extent of fast-twitch skeletal muscle contraction.
    GO:0006942    regulation of striated muscle contraction    Any process that modulates the frequency, rate or extent of striated muscle contraction.
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
    GO:0031673    H zone    A relatively pale zone traversing the center of the A band of a sarcomere, visible in relaxed muscle fibers; consists of the central portion of thick (myosin) filaments that are not overlapped by thin (actin) filaments.
    GO:0031674    I band    A region of a sarcomere that appears as a light band on each side of the Z disc, comprising a region of the sarcomere where thin (actin) filaments are not overlapped by thick (myosin) filaments; contains actin, troponin, and tropomyosin; each sarcomere includes half of an I band at each end.
    GO:0005783    endoplasmic reticulum    The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached).
    GO:0005789    endoplasmic reticulum membrane    The lipid bilayer surrounding the endoplasmic reticulum.
    GO:0005793    endoplasmic reticulum-Golgi intermediate compartment    A complex system of membrane-bounded compartments located between endoplasmic reticulum (ER) and the Golgi complex, with a distinctive membrane protein composition; involved in ER-to-Golgi and Golgi-to-ER transport.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0048471    perinuclear region of cytoplasm    Cytoplasm situated near, or occurring around, the nucleus.
    GO:0016529    sarcoplasmic reticulum    A fine reticular network of membrane-limited elements that pervades the sarcoplasm of a muscle cell; continuous over large portions of the cell and with the nuclear envelope; that part of the endoplasmic reticulum specialized for calcium release, uptake and storage.
    GO:0033017    sarcoplasmic reticulum membrane    The lipid bilayer surrounding the sarcoplasmic reticulum.

Chain F,I,J   (COPA_ARCFU | O29777)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0019829    cation-transporting ATPase activity    Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + cation(out) = ADP + phosphate + cation(in).
    GO:0005507    copper ion binding    Interacting selectively and non-covalently with copper (Cu) ions.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
biological process
    GO:0098655    cation transmembrane transport    A process in which a cation is transported from one side of a membrane to the other by means of some agent such as a transporter or pore.
    GO:0006812    cation transport    The directed movement of cations, atoms or small molecules with a net positive charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0006825    copper ion transport    The directed movement of copper (Cu) ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0006811    ion transport    The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0030001    metal ion transport    The directed movement of metal ions, any metal ion with an electric charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        AT2A1_RABIT | P041911fqu 1iwo 1kju 1su4 1t5s 1t5t 1vfp 1wpg 1xp5 2agv 2by4 2c88 2c8k 2c8l 2c9m 2dqs 2ear 2eat 2eau 2o9j 2oa0 2yfy 2zbd 2zbe 2zbf 2zbg 3ar2 3ar3 3ar4 3ar5 3ar6 3ar7 3ar8 3ar9 3b9b 3b9r 3ba6 3fgo 3fpb 3fps 3j7t 3n5k 3n8g 3w5a 3w5b 3w5c 3w5d 4bew 4h1w 4j2t 4kyt 4nab 4uu0 4uu1 4xou 4y3u 4ycl 4ycm 4ycn 5a3q 5a3r 5a3s 5xa7 5xa8 5xa9 5xaa 5xab
        COPA_ARCFU | O297772b8e 2hc8 3a1c 3a1d 3a1e 3fry 3j08 3j09
        COPA_BACSU | O322201jww 1kqk 1opz 1oq3 1oq6 1p6t 2rml

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 2VOY)