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(-) Description

Title :  CRYSTAL STRUCTURE OF (SR) CALCIUM-ATPASE E2(TG) IN THE PRESENCE OF DOPC
 
Authors :  N. D. Drachmann, C. Olesen, J. V. Moeller, Z. Guo, P. Nissen, M. Bublitz
Date :  24 Jul 14  (Deposition) - 01 Oct 14  (Release) - 01 Oct 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.80
Chains :  Asym./Biol. Unit :  A
Keywords :  Hydrolase, Ca2+-Atpase, P-Type Atpase, Cation Pump, Membrane Protein, Lipid Binding, Lipid Binding Sites, Dopc (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  N. D. Drachmann, C. Olesen, J. V. Moller, Z. Guo, P. Nissen, M. Bublitz
Comparing Crystal Structures Of Ca(2+) -Atpase In The Presence Of Different Lipids.
Febs J. V. 281 4249 2014
PubMed-ID: 25103814  |  Reference-DOI: 10.1111/FEBS.12957

(-) Compounds

Molecule 1 - SARCOPLASMIC ENDOPLASMIC RETICULUM CALCIUM ATPASE
    Chains: A
    EC Number: 3.6.3.8
    Organ: HIND LEG MUSCLE
    Organism Common: RABBIT
    Organism Scientific: ORYCTOLAGUS CUNICULUS
    Organism Taxid: 9986
    Tissue: FAST TWITCH SKELETAL MUSCLE

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (7, 10)

Asymmetric/Biological Unit (7, 10)
No.NameCountTypeFull Name
1ACE1Mod. Amino AcidACETYL GROUP
2ACP1Ligand/IonPHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER
3GOL2Ligand/IonGLYCEROL
4K1Ligand/IonPOTASSIUM ION
5MG1Ligand/IonMAGNESIUM ION
6PCW3Ligand/Ion1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE
7TG11Ligand/IonOCTANOIC ACID [3S-[3ALPHA, 3ABETA, 4ALPHA,6BETA, 6ABETA, 7BETA, 8ALPHA(Z), 9BALPHA]]-6-(ACETYLOXY)-2,3,-3A,4,5,6,6A,7,8,9B-DECAHYDRO-3,3A-DIHYDROXY-3,6,9-TRIMETHYL-8-[(2-METHYL-1-OXO-2-BUTENYL)OXY]-2-OXO-4-(1-OXOBUTOXY)-AZULENO[4,5-B]FURAN-7-YL ESTER

(-) Sites  (9, 9)

Asymmetric Unit (9, 9)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:255 , PHE A:256 , LEU A:260 , VAL A:263 , ALA A:306 , ILE A:761 , ILE A:765 , VAL A:769 , LEU A:828 , ILE A:829 , PHE A:834 , TYR A:837 , MET A:838BINDING SITE FOR RESIDUE TG1 A1003
2AC2SOFTWAREASN A:101 , GLN A:108 , GLN A:250 , PRO A:312 , ALA A:313 , THR A:316 , LEU A:319 , PRO A:337BINDING SITE FOR RESIDUE PCW A1101
3AC3SOFTWAREMET A:923 , ARG A:924 , PHE A:986 , ARG A:989 , ASN A:990BINDING SITE FOR RESIDUE PCW A1102
4AC4SOFTWARELEU A:273 , ASN A:275 , ALA A:780 , LEU A:781 , TRP A:928BINDING SITE FOR RESIDUE PCW A1103
5AC5SOFTWAREALA A:517 , PRO A:518 , ARG A:678 , ACP A:1996BINDING SITE FOR RESIDUE GOL A1301
6AC6SOFTWARETHR A:181 , ASP A:351 , THR A:353 , ASP A:703BINDING SITE FOR RESIDUE GOL A1302
7AC7SOFTWARETHR A:353 , GLU A:442 , PHE A:487 , LYS A:515 , GLY A:516 , ALA A:517 , ARG A:560 , CYS A:561 , LEU A:562 , GLY A:626 , ARG A:678 , GOL A:1301 , MG A:2002BINDING SITE FOR RESIDUE ACP A1996
8AC8SOFTWAREGLN A:244 , LEU A:711 , LYS A:712 , ALA A:714 , GLU A:732BINDING SITE FOR RESIDUE K A2001
9AC9SOFTWAREGLU A:439 , ARG A:560 , ACP A:1996BINDING SITE FOR RESIDUE MG A2002

(-) SS Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1A:876 -A:888

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4UU1)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4UU1)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4UU1)

(-) Exons   (0, 0)

(no "Exon" information available for 4UU1)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:995
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhh.......hhhhhhhhhhhhh..........hhhhhhhhh...hhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhh....eeeeee..eeeeeeee.hhh....eeeee.......eeeeeee.....eee..........ee...........hhhhh..ee....eeee.eeeeeeeehhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh.eee...hhhhhhhh..eeeee..........eeeeeeeeeeee..eeeeeeeee..........eee..ee.hhhhhhhhhhhhhhhhhh....eee......eee..hhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhheeeeeeeeee....eeeeeeee..........eeeeeehhhhhhhheeeeee..eeee.hhhhhhhhhhhhhhhhhh....eeeeeeee....hhhhh...hhhhhhhhh..eeeeeeeeee.....hhhhhhhhhhhh..eeeeee..hhhhhhhhhhhh.............eehhhhhh.hhhhhhhhhhhh.eee...hhhhhhhhhhhhh....eeeee.hhhhhhhhhhh.eeeee...hhhhhhh..eee...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhh.hhhhhhhhhhh....hhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4uu1 A   0 xMEAAHSKSTEECLAYFGVSETTGLTPDQVKRHLEKYGHNELPAEEGKSLWELVIEQFEDLLVRILLLAACISFVLAWFEEGEETITAFVEPFVILLILIANAIVGVWQERNAENAIEALKEYEPEMGKVYRADRKSVQRIKARDIVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQSILTGESVSVIKHTEPVPDPRAVNQDKKNMLFSGTNIAAGKALGIVATTGVSTEIGKIRDQMAATEQDKTPLQQKLDEFGEQLSKVISLICVAVWLINIGHFNDPVHGGSWIRGAIYYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCTSVICSDKTGTLTTNQMSVCKMFIIDKVDGDFCSLNEFSITGSTYAPEGEVLKNDKPIRSGQFDGLVELATICALCNDSSLDFNETKGVYEKVGEATETALTTLVEKMNVFNTEVRNLSKVERANACNSVIRQLMKKEFTLEFSRDRKSMSVYCSPAKSSRAAVGNKMFVKGAPEGVIDRCNYVRVGTTRVPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKREEMVLDDSSRFMEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIFGENEEVADRAYTGREFDDLPLAEQREACRRACCFARVEPSHKSKIVEYLQSYDEITAMTGDGVNDAPALKKAEIGIAMGSGTAVAKTASEMVLADDNFSTIVAAVEEGRAIYNNMKQFIRYLISSNVGEVVCIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDRPPRSPKEPLISGWLFFRYMAIGGYVGAATVGAAAWWFMYAEDGPGVTYHQLTHFMQCTEDHPHFEGLDCEIFEAPEPMTMALSVLVTIEMCNALNSLSENQSLMRMPPWVNIWLLGSICLSMSLHFLILYVDPLPMIFKLKALDLTQWLMVLKISLPVIGLDEILKFIARNYLEG 994
                            |        9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519       529       539       549       559       569       579       589       599       609       619       629       639       649       659       669       679       689       699       709       719       729       739       749       759       769       779       789       799       809       819       829       839       849       859       869       879       889       899       909       919       929       939       949       959       969       979       989     
                            |                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  
                            0-ACE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4UU1)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4UU1)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4UU1)

(-) Gene Ontology  (24, 37)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        AT2A1_RABIT | P04191: 1fqu 1iwo 1kju 1su4 1t5s 1t5t 1vfp 1wpg 1xp5 2agv 2by4 2c88 2c8k 2c8l 2c9m 2dqs 2ear 2eat 2eau 2o9j 2oa0 2voy 2yfy 2zbd 2zbe 2zbf 2zbg 3ar2 3ar3 3ar4 3ar5 3ar6 3ar7 3ar8 3ar9 3b9b 3b9r 3ba6 3fgo 3fpb 3fps 3j7t 3n5k 3n8g 3w5a 3w5b 3w5c 3w5d 4bew 4h1w 4j2t 4kyt 4nab 4uu0 4xou 4y3u 4ycl 4ycm 4ycn 5a3q 5a3r 5a3s 5xa7 5xa8 5xa9 5xaa 5xab
        B6CAM1_RABIT | B6CAM1: 3n8g 3w5a 3w5b 3w5c 3w5d 4h1w 4j2t 4kyt 4uu0
UniProtKB/TrEMBL
        B6CAM1_RABIT | B6CAM1: 3nal 3nam 3nan

(-) Related Entries Specified in the PDB File

4uu0 CRYSTAL STRUCTURE OF (SR) CALCIUM-ATPASE E2(TG) IN THE PRESENCE OF 14:1 PC