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NMR Structure - model 1 (Jmol Viewer)

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Title :   SOLUTION STRUCTURE OF THE N-TERMINAL SOLUBLE DOMAINS OF BACILLUS SUBTILIS COPA

Authors :   C. Singleton, L. Banci, I. Bertini, S. Ciofi-Baffoni, L. Tenori, M. A. Kihlken, R. Boetzel, N. E. Le Brun

Date :   30 Oct 07 (Deposition) - 26 Feb 08 (Release) - 24 Feb 09 (Revision)

Method :   SOLUTION NMR

Resolution :   NOT APPLICABLE

Chains :   NMR Structure  : A  (25x)

Keywords :   Copa, P-Type Atpase, Atp-Binding, Copper, Copper Transport, Hydrolase, Ion Transport, Magnesium, Membrane, Metal- Binding, Nucleotide-Binding, Phosphorylation, Transmembrane, Transport (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   C. Singleton, L. Banci, S. Ciofi-Baffoni, L. Tenori, M. A. Kihlken, R. Boetzel, N. E. Le Brun
Structure And Cu(I)-Binding Properties Of The N-Terminal Soluble Domains Of Bacillus Subtilis Copa
Biochem. J. V. 411 571 2008
PubMed-ID: 18215122 | Reference-DOI: 10.1042/BJ20071620
(for further references see the PDB file header)

Molecule 1 - COPPER-TRANSPORTING P-TYPE ATPASE COPA
	Chains	:	A
	EC Number	:	3.6.3.-
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Expression System Vector	:	PET21A
	Expression System Vector Type	:	VECTOR
	Gene	:	COPA
	Organism Scientific	:	BACILLUS SUBTILIS
	Organism Taxid	:	1423
	Synonym	:	PROTEIN COPA


NMR Structure (25x)	:

Summary Information (see also Sequences/Alignments below)

(no "Ligand,Modified Residues,Ions" information available for 2RML)

(no "Site" information available for 2RML)

(no "SS Bond" information available for 2RML)

(no "Cis Peptide Bond" information available for 2RML)

(no "SAP(SNP)/Variant" information available for 2RML)

NMR Structure (2, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	HMA_2	PS50846	Heavy-metal-associated domain profile.	COPA_BACSU	6-72 74-140	2	A:7-73 A:75-141
2	HMA_1	PS01047	Heavy-metal-associated domain.	COPA_BACSU	11-40 79-108	2	A:12-41 A:80-109

(no "Exon" information available for 2RML)

NMR Structure

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:147
 aligned with COPA_BACSU | O32220 from UniProtKB/Swiss-Prot  Length:802

    Alignment length:147
                             1                                                                                                                                                 
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       
           COPA_BACSU     - -MSEQKEIAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLATETSNVIYDPAETGTAAIQEKIEKLGYHVVTEKAEFDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKEAVDKLGYKLKLKGEQDS 146
               SCOP domains d2rmla1 A:1-72 automated matches                                        d2rmla2 A:73-147 automated matches                                          SCOP domains
               CATH domains 2rmlA01 A:1-71  [code=3.30.70.100, no name defined]                    2rmlA02 A:72-147  [code=3.30.70.100, no name defined]                        CATH domains
           Pfam domains (1) ----------------------------------------------------------------------------HMA-2rmlA01 A:77-138                                          --------- Pfam domains (1)
           Pfam domains (2) ----------------------------------------------------------------------------HMA-2rmlA02 A:77-138                                          --------- Pfam domains (2)
         Sec.struct. author .....eeeeeeee...hhhhhhhhhhhhh....eeeeee.....eeeeee.....hhhhhhhhhhh...ee..eeeeee.....hhhhhhhhhhhhh....eee........eeeeee.....hhhhhhhhhhh.....ee...... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ------HMA_2  PDB: A:7-73 UniProt: 6-72                                   -HMA_2  PDB: A:75-141 UniProt: 74-140                               ------ PROSITE (1)
                PROSITE (2) -----------HMA_1  PDB: A:12-41           --------------------------------------HMA_1  PDB: A:80-109          -------------------------------------- PROSITE (2)
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2rml A   1 MLSEQKEIAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLATETSNVIYDPAETGTAAIQEKIEKLGYHVVTEKAEFDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKEAVDKLGYKLKLKGEQDS 147
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

NMR Structure

Classes(

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Folds(

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Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

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Class: Alpha and beta proteins (a+b) (23004)

Fold: Ferredoxin-like (1795)

Superfamily: HMA, heavy metal-associated domain (79)

Family: HMA, heavy metal-associated domain (59)

Protein domain: automated matches (10)

Bacillus subtilis [TaxId: 1423] (3)

1a	d2rmla1	A:1-72
1b	d2rmla2	A:73-147

NMR Structure

Classes(

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Architectures( (-)

)

Topologies( (-)

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Homologous Superfamilies( (-)

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Organisms( (-)

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Class: Alpha Beta (26913)

Architecture: 2-Layer Sandwich (8480)

Topology: Alpha-Beta Plaits (1688)

Homologous Superfamily: [code=3.30.70.100, no name defined] (82)

Bacillus subtilis. Organism_taxid: 1423. (9)

1a	2rmlA01	A:1-71
1b	2rmlA02	A:72-147

NMR Structure

Clans(

)

Families(

)

Organisms( (-)

)

Clan: no clan defined [family: HMA] (41)

Family: HMA (41)

Bacillus subtilis (11)

1a	HMA-2rmlA01	A:77-138
1b	HMA-2rmlA02	A:77-138

NMR Structure(hide GO term definitions)

Chain A (COPA_BACSU | O32220)

molecular function
	GO:0005524	ATP binding	Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
	GO:0019829	cation-transporting ATPase activity	Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + cation(out) = ADP + phosphate + cation(in).
	GO:0005507	copper ion binding	Interacting selectively and non-covalently with copper (Cu) ions.
	GO:0043682	copper-transporting ATPase activity	Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + Cu2+ = ADP + phosphate + Cu2+, directly driving the transport of the copper ions across a membrane.
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
	GO:0042802	identical protein binding	Interacting selectively and non-covalently with an identical protein or proteins.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
biological process
	GO:0098655	cation transmembrane transport	A process in which a cation is transported from one side of a membrane to the other by means of some agent such as a transporter or pore.
	GO:0006812	cation transport	The directed movement of cations, atoms or small molecules with a net positive charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
	GO:0035434	copper ion transmembrane transport	The directed movement of copper cation across a membrane.
	GO:0006825	copper ion transport	The directed movement of copper (Cu) ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
	GO:0006811	ion transport	The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
	GO:0030001	metal ion transport	The directed movement of metal ions, any metal ion with an electric charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
	GO:0006810	transport	The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
	GO:0016021	integral component of membrane	The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
	GO:0005887	integral component of plasma membrane	The component of the plasma membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
	GO:0043231	intracellular membrane-bounded organelle	Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0005886	plasma membrane	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

NMR Structure
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	COPA_BACSU \| O32220	:	1jww 1kqk 1opz 1oq3 1oq6 1p6t 2voy

Description

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Ligands, Modified Residues, Ions (0, 0)

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