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(-) Description

Title :  STRUCTURE OF THE INTEGRIN ALPHAIIB-BETA3(A711P) TRANSMEMBRANE COMPLEX
 
Authors :  T. Schmidt, A. J. Situ, T. S. Ulmer
Date :  14 Dec 15  (Deposition) - 03 Aug 16  (Release) - 03 Aug 16  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A,B  (21x)
NMR Structure *:  A,B  (1x)
Keywords :  Transmembrane Complex, Integrin Receptor, Cell Adhesion, Helix Kink, Membrane Protein-Cell Adhesion Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. Schmidt, A. J. Situ, T. S. Ulmer
Structural And Thermodynamic Basis Of Proline-Induced Transmembrane Complex Stabilization.
Sci Rep V. 6 29809 2016
PubMed-ID: 27436065  |  Reference-DOI: 10.1038/SREP29809

(-) Compounds

Molecule 1 - INTEGRIN ALPHA-IIB
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector: PET44-GB3-AIIB
    Fragment: HELICAL TRANSMEMBRANE RESIDUES 989-1029
    Gene: ITGA2B, GP2B, ITGAB
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: GPALPHA IIB, GPIIB, PLATELET MEMBRANE GLYCOPROTEIN IIB, INTEGRIN ALPHA-IIB HEAVY CHAIN, INTEGRIN ALPHA-IIB LIGHT CHAIN, FORM 1, INTEGRIN ALPHA-IIB LIGHT CHAIN, FORM 2
 
Molecule 2 - INTEGRIN BETA-3
    Chains: B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector: PET44-GB3-B3(A711P)
    Fragment: HELICAL TRANSMEMBRANE RESIDUES 712-753
    Gene: ITGB3, GP3A
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: PLATELET MEMBRANE GLYCOPROTEIN IIIA, GPIIIA

 Structural Features

(-) Chains, Units

  12
NMR Structure (21x): AB
NMR Structure * (1x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2N9Y)

(-) Sites  (0, 0)

(no "Site" information available for 2N9Y)

(-) SS Bonds  (1, 1)

NMR Structure
No.Residues
1A:963 -B:690

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2N9Y)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2N9Y)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2N9Y)

(-) Exons   (0, 0)

(no "Exon" information available for 2N9Y)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:42
                                                                          
               SCOP domains ------------------------------------------ SCOP domains
               CATH domains ------------------------------------------ CATH domains
               Pfam domains ------------------------------------------ Pfam domains
         Sec.struct. author ........hhhhhhhhhhhhhhhhhhhhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------ PROSITE
                 Transcript ------------------------------------------ Transcript
                 2n9y A 957 GALEERCIPIWWVLVGVLGGLLLLTILVLAMWKVGFFKRNRP 998
                                   966       976       986       996  


Chain B from PDB  Type:PROTEIN  Length:43
                                                                           
               SCOP domains ------------------------------------------- SCOP domains
               CATH domains ------------------------------------------- CATH domains
               Pfam domains ------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------- PROSITE
                 Transcript ------------------------------------------- Transcript
                 2n9y B 685 GESPKCPDILVVLLSVMGAILLIGLAPLLIWKLLITIHDRKEF 727
                                   694       704       714       724
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2N9Y)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2N9Y)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2N9Y)

(-) Gene Ontology  (81, 99)

NMR Structure(hide GO term definitions)

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  ITA2B_HUMAN | P08514
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  ITB3_HUMAN | P05106
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ITA2B_HUMAN | P08514: 1dpk 1dpq 1jx5 1kup 1kuz 1m8o 1rn0 1s4w 1tye 1uv9 2k1a 2k9j 2knc 2mtp 2vc2 2vdk 2vdl 2vdm 2vdn 2vdo 2vdp 2vdq 2vdr 3fcs 3fcu 3nid 3nif 3nig 3t3m 3t3p 3zdx 3zdy 3zdz 3ze0 3ze1 3ze2 4cak 4z7n 4z7o 4z7q 5hdb
        ITB3_HUMAN | P05106: 1jv2 1kup 1kuz 1l5g 1m1x 1m8o 1miz 1mk7 1mk9 1rn0 1s4x 1tye 1u8c 2h7d 2h7e 2ini 2k9j 2knc 2kv9 2l1c 2l91 2ljd 2lje 2ljf 2mtp 2q6w 2rmz 2rn0 2vc2 2vdk 2vdl 2vdm 2vdn 2vdo 2vdp 2vdq 2vdr 3fcs 3fcu 3ije 3nid 3nif 3nig 3t3m 3t3p 3zdx 3zdy 3zdz 3ze0 3ze1 3ze2 4cak 4g1e 4g1m 4hxj 4mmx 4mmy 4mmz 4o02 4z7n 4z7o 4z7q 5hdb

(-) Related Entries Specified in the PDB File

2k9j WILD-TYPE STRUCTURE RELATED ID: 25920 RELATED DB: BMRB