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(-) Description

Title :  STRUCTURAL INVESTIGATION OF HNRNP L BOUND TO RNA
 
Authors :  M. Blatter, F. Allain
Date :  24 Jun 14  (Deposition) - 23 Dec 15  (Release) - 23 Dec 15  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A,B,C  (20x)
NMR Structure *:  A,B,C  (1x)
Keywords :  Protein-Rna Complex, Rrm, Rna Binding Protein-Rna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Blatter, F. Allain
Structural Investigation Of Hnrnp L Bound To Rna
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - HETEROGENOUS NUCLEAR RIBONUCLEOPROTEIN L
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector: PTYB11
    Fragment: UNP RESIDUES 31-245
    Gene: FBLIM1, HNRNP-L, HNRNPL, HNRPL
    Organism Common: BROWN RAT,RAT,RATS
    Organism Scientific: RATTUS NORVEGICUS
    Organism Taxid: 10116
    Synonym: HNRPL PROTEIN, PROTEIN HNRNPL
 
Molecule 2 - RNA (5'-R(*AP*CP*AP*CP*A)-3')
    Chains: B, C
    Engineered: YES
    Synthetic: YES

 Structural Features

(-) Chains, Units

  123
NMR Structure (20x): ABC
NMR Structure * (1x): ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2MQQ)

(-) Sites  (0, 0)

(no "Site" information available for 2MQQ)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2MQQ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2MQQ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2MQQ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2MQQ)

(-) Exons   (0, 0)

(no "Exon" information available for 2MQQ)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:215
                                                                                                                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eeeee.......hhhhhhhhhhh...eeeeeee.....eeeeee..hhhhhhhhhhh..eee..eeeeeee....................eee..........hhhhhh.........eeeeeee....hhhhhhhhhhhh......eeeee.......eeeeee..hhhhhhhhhhhhh...............eeee....... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2mqq A 372 YGPHADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLCFSTAQHAS 586
                                   381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581     


Chain B from PDB  Type:RNA  Length:5
                                     
                 2mqq B   1 ACACA   5


Chain C from PDB  Type:RNA  Length:5
                                     
                 2mqq C   1 ACACA   5
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2MQQ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2MQQ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2MQQ)

(-) Gene Ontology  (23, 23)

NMR Structure(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        HNRPL_RAT | F1LQ48: 2mql 2mqm 2mqn 2mqo 2mqp 4qpt

(-) Related Entries Specified in the PDB File

2mql 2mqm 2mqn 2mqo 2mqp 4qpt