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(-) Description

Title :  STRUCTURAL INVESTIGATION OF HNRNP L
 
Authors :  M. Blatter, F. Allain
Date :  24 Jun 14  (Deposition) - 06 May 15  (Release) - 04 Nov 15  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
NMR Structure *:  A  (1x)
Keywords :  Protein, Rrm, Rna Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Blatter, S. Dunin-Horkawicz, I. Grishina, C. Maris, S. Thore, T. Maier, A. Bindereif, J. M. Bujnicki, F. H. Allain
The Signature Of The Five-Stranded Vrrm Fold Defined By Functional, Structural And Computational Analysis Of The Hnrnp L Protein.
J. Mol. Biol. V. 427 3001 2015
PubMed-ID: 26051023  |  Reference-DOI: 10.1016/J.JMB.2015.05.020

(-) Compounds

Molecule 1 - HETEROGENOUS NUCLEAR RIBONUCLEOPROTEIN L
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector: PET28-A
    Fragment: UNP RESIDUES 30-245
    Gene: HNRNPL, FBLIM1, HNRNP-L, HNRPL
    Organism Common: RAT
    Organism Scientific: RATTUS NORVEGICUS
    Organism Taxid: 10116
    Synonym: HNRPL PROTEIN, PROTEIN HNRNPL

 Structural Features

(-) Chains, Units

  1
NMR Structure (20x): A
NMR Structure * (1x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2MQN)

(-) Sites  (0, 0)

(no "Site" information available for 2MQN)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2MQN)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2MQN)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2MQN)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2MQN)

(-) Exons   (0, 0)

(no "Exon" information available for 2MQN)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:216
                                                                                                                                                                                                                                                        
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .........eeeee.......hhhhhhhhhhhhh.eeeeee......eeeeee.hhhhhhhhhhh...........eeee....................eee..........................eeeeeee...hhhhhhhhhhhhh.....ee..ee.....eeeeeee..hhhhhhhhhhhhh...............eeee....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2mqn A 371 DYGPHADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLCFSTAQHAS 586
                                   380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2MQN)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2MQN)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2MQN)

(-) Gene Ontology  (23, 23)

NMR Structure(hide GO term definitions)

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  2mqn
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        HNRPL_RAT | F1LQ48: 2mql 2mqm 2mqo 2mqp 2mqq 4qpt

(-) Related Entries Specified in the PDB File

bmrb RELATED ID: PDB RELATED DB: 2MQL RELATED ID: PDB RELATED DB: 2MQM RELATED ID: PDB RELATED DB: 2MQO RELATED ID: PDB RELATED DB: 2MQP RELATED ID: PDB RELATED DB: 2MQQ