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(-) Description

Title :  STRUCTURAL INVESTIGATION OF HNRNP L BOUND TO RNA
 
Authors :  M. Blatter, F. Allain
Date :  24 Jun 14  (Deposition) - 23 Dec 15  (Release) - 23 Dec 15  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A,B  (20x)
NMR Structure *:  A,B  (1x)
Keywords :  Protein-Rna Complex, Rrm, Rna Binding Protein-Rna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Blatter, F. Allain
Structural Investigation Of Hnrnp L Bound To Rna
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PROTEIN HNRNPL
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector: PTYB11
    Fragment: UNP RESIDUES 174-291
    Gene: HNRNPL
    Organism Common: BROWN RAT,RAT,RATS
    Organism Scientific: RATTUS NORVEGICUS
    Organism Taxid: 10116
 
Molecule 2 - RNA (5'-R(*AP*CP*AP*CP*AP*C)-3')
    Chains: B
    Engineered: YES
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
NMR Structure (20x): AB
NMR Structure * (1x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2MQP)

(-) Sites  (0, 0)

(no "Site" information available for 2MQP)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2MQP)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2MQP)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2MQP)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2MQP)

(-) Exons   (0, 0)

(no "Exon" information available for 2MQP)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:118
                                                                                                                                                      
               SCOP domains ---------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhh...eeeeee.......hhhhhhhhhhhhh.eeeeeee.....eeeeee.hhhhhhhhhhhh...........eeeee..............eee..hhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------- Transcript
                 2mqp A 174 QKISRPGDSDDSRSVNSVLLFTILNPIYSITTDVLYTICNPCGPVQRIVIFRKNGVQAMVEFDSVQSAQRAKASLNGADIYSGCCTLKIEYAKPTRLNVFKNDQDTWDYTNPNLSGQG 291
                                   183       193       203       213       223       233       243       253       263       273       283        


Chain B from PDB  Type:RNA  Length:6
                                      
                 2mqp B   1 ACACAC   6
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2MQP)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2MQP)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2MQP)

(-) Gene Ontology  (26, 31)

NMR Structure(hide GO term definitions)

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  HNRPL_RAT | F1LQ48
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        F2Z3R2_RAT | F2Z3R2: 2mql 2mqm 2mqo
        HNRPL_RAT | F1LQ48: 2mql 2mqm 2mqn 2mqo 2mqq 4qpt

(-) Related Entries Specified in the PDB File

bmrb RELATED ID: PDB RELATED DB: 2MQL RELATED ID: PDB RELATED DB: 2MQM RELATED ID: PDB RELATED DB: 2MQN RELATED ID: PDB RELATED DB: 2MQO RELATED ID: PDB RELATED DB: 2MQQ