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(-) Description

Title :  FAB STRUCTURE OF ANTI-HIV-1 GP120 V2 MAB 697
 
Authors :  R. M. Pan, X. P. Kong
Date :  11 Jan 12  (Deposition) - 21 Mar 12  (Release) - 11 Apr 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.48
Chains :  Asym. Unit :  H,I,J,K,L,M,N,O
Biol. Unit 1:  H,L  (1x)
Biol. Unit 2:  I,M  (1x)
Biol. Unit 3:  J,N  (1x)
Biol. Unit 4:  K,O  (1x)
Keywords :  Ig, Antibody, Hiv-1 Gp120, Immune System (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. K. Gorny, R. Pan, C. Williams, X. H. Wang, B. Volsky, T. O'Neal, B. Spurrier, J. M. Sampson, L. Li, M. S. Seaman, X. P. Kong, S. Zolla-Pazner
Functional And Immunochemical Cross-Reactivity Of V2-Specific Monoclonal Antibodies From Hiv-1-Infected Individuals.
Virology V. 427 198 2012
PubMed-ID: 22402248  |  Reference-DOI: 10.1016/J.VIROL.2012.02.003

(-) Compounds

Molecule 1 - LIGHT CHAIN OF FAB FRAGMENT OF ANTI-HIV1 GP120 V2 MAB 697
    Chains: L, M, N, O
    Engineered: YES
    Expression System: HOMO SAPIENS
    Expression System Cell Line: HEK-293
    Expression System Taxid: 9606
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
 
Molecule 2 - HEAVY CHAIN OF FAB FRAGMENT OF ANTI-HIV1 GP120 V2 MAB 697
    Chains: H, I, J, K
    Engineered: YES
    Expression System: HOMO SAPIENS
    Expression System Cell Line: HEK-293
    Expression System Taxid: 9606
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : HIJKLMNO
Biological Unit 1 (1x): H   L   
Biological Unit 2 (1x):  I   M  
Biological Unit 3 (1x):   J   N 
Biological Unit 4 (1x):    K   O

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4D9L)

(-) Sites  (0, 0)

(no "Site" information available for 4D9L)

(-) SS Bonds  (16, 16)

Asymmetric Unit
No.Residues
1H:22 -H:92
2H:140 -H:196
3I:22 -I:92
4I:140 -I:196
5J:22 -J:92
6J:140 -J:196
7K:22 -K:92
8K:140 -K:196
9L:23 -L:88
10L:134 -L:193
11M:23 -M:88
12M:134 -M:193
13N:23 -N:88
14N:134 -N:193
15O:23 -O:88
16O:134 -O:193

(-) Cis Peptide Bonds  (17, 17)

Asymmetric Unit
No.Residues
1Ile L:27C-Gly L:28
2Tyr L:140 -Pro L:141
3Phe H:146 -Pro H:147
4Glu H:148 -Pro H:149
5Tyr M:140 -Pro M:141
6Leu I:138 -Gly I:139
7Phe I:146 -Pro I:147
8Glu I:148 -Pro I:149
9Tyr N:140 -Pro N:141
10Phe J:146 -Pro J:147
11Glu J:148 -Pro J:149
12Ser J:187 -Ser J:188
13Tyr O:140 -Pro O:141
14Leu K:138 -Gly K:139
15Phe K:146 -Pro K:147
16Glu K:148 -Pro K:149
17Ser K:187 -Ser K:188

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4D9L)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4D9L)

(-) Exons   (0, 0)

(no "Exon" information available for 4D9L)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain H from PDB  Type:PROTEIN  Length:222
 aligned with Q6GMX6_HUMAN | Q6GMX6 from UniProtKB/TrEMBL  Length:465

    Alignment length:222
                                                                                72                                                                                                                                                                        
                                                                              71 |                                          117  118                                                                                                                      
                                    29        39        49        59        69 | |    78        88        98       108        |-   |   124       134       144       154       164       174       184       194       204       214       224       234  
        Q6GMX6_HUMAN     20 QVQLQESGPGLVKPSETLSLTCTVSGGSISGYYWSWIRQPAGKGLEWIGRIY-TSGSTNYNPSLKSRVTMSVDTSKNQFSLKLSSVTAADTAVYYCARG----RFTYFDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK  236
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeee...eee.....eeeeeeee..hhhhheeeeeee.....eeeeeeee....eeee.......eeeeee....eeeeee...hhhhheeeeeeee..........ee...eeeee........eeeee..hhh.ee..eeeeeeeeeee.....eeee.hhh....eee...ee.....eeeeeeeeee.hhh.....eeeeeehhhheeeeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                4d9l H    1 QVQLVQSGAEVKKPGSSVKVSCKASGGNFNTYTISWVRQAPGQGLEWMGRIIPIFGIVNPAQKFPGRVTINVDKSTNTAYMELSSLRSEDTAVYYCATSGVGLHFGYFDYWGQGTQVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK  214
                                    10        20        30        40        50  |     59        69        79   |||  86        96    |||102       112       122       132       142       152       162       172       182       192       202       212  
                                                                              52A                            82A||               100A|||                                                                                                                  
                                                                                                              82B|                100B||                                                                                                                  
                                                                                                               82C                 100C|                                                                                                                  
                                                                                                                                    100D                                                                                                                  


Chain I from PDB  Type:PROTEIN  Length:218
 aligned with Q6GMX6_HUMAN | Q6GMX6 from UniProtKB/TrEMBL  Length:465

    Alignment length:222
                                                                                72                                                                                                                                                                        
                                                                              71 |                                          117  118                                                                                                                      
                                    29        39        49        59        69 | |    78        88        98       108        |-   |   124       134       144       154       164       174       184       194       204       214       224       234  
        Q6GMX6_HUMAN     20 QVQLQESGPGLVKPSETLSLTCTVSGGSISGYYWSWIRQPAGKGLEWIGRIY-TSGSTNYNPSLKSRVTMSVDTSKNQFSLKLSSVTAADTAVYYCARG----RFTYFDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK  236
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeee...eee.....eeeeeeee..hhh.eeeeeeee......eeeeee......eee.......eeeeee....eeeeee...hhhhheeeeeeeee.........ee...eeeee........eeeee....----..eeeeeeeeeee.....eeee.hhh....eee...ee.....eeeeeeeeee.hhh.....eeeeee....eeeeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                4d9l I    1 QVQLVQSGAEVKKPGSSVKVSCKASGGNFNTYTISWVRQAPGQGLEWMGRIIPIFGIVNPAQKFPGRVTINVDKSTNTAYMELSSLRSEDTAVYYCATSGVGLHFGYFDYWGQGTQVTVSSASTKGPSVFPLAPSS----GGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK  214
                                    10        20        30        40        50  |     59        69        79   |||  86        96    |||102       112       122     |   -|      142       152       162       172       182       192       202       212  
                                                                              52A                            82A||               100A|||                         128  133                                                                                 
                                                                                                              82B|                100B||                                                                                                                  
                                                                                                               82C                 100C|                                                                                                                  
                                                                                                                                    100D                                                                                                                  


Chain J from PDB  Type:PROTEIN  Length:223
 aligned with Q6GMX6_HUMAN | Q6GMX6 from UniProtKB/TrEMBL  Length:465

    Alignment length:223
                                                                                72                                                                                                                                                                         
                                                                              71 |                                          117  118                                                                                                                       
                                    29        39        49        59        69 | |    78        88        98       108        |-   |   124       134       144       154       164       174       184       194       204       214       224       234   
        Q6GMX6_HUMAN     20 QVQLQESGPGLVKPSETLSLTCTVSGGSISGYYWSWIRQPAGKGLEWIGRIY-TSGSTNYNPSLKSRVTMSVDTSKNQFSLKLSSVTAADTAVYYCARG----RFTYFDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKS  237
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee...eee.....eeeeeeee..hhh.eeeeeeee......eeeeeeehhhheeee.......eeeeee....eeeeee...hhhhheeeeeeeee.........ee...eeeee........eeeee..hhh.ee..eeeeeeeeeee.....eeee.hhh....eee...ee.....eeeeeeeeee.........eeeeeehhhheeeeee..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4d9l J    1 QVQLVQSGAEVKKPGSSVKVSCKASGGNFNTYTISWVRQAPGQGLEWMGRIIPIFGIVNPAQKFPGRVTINVDKSTNTAYMELSSLRSEDTAVYYCATSGVGLHFGYFDYWGQGTQVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKS  215
                                    10        20        30        40        50  |     59        69        79   |||  86        96    |||102       112       122       132       142       152       162       172       182       192       202       212   
                                                                              52A                            82A||               100A|||                                                                                                                   
                                                                                                              82B|                100B||                                                                                                                   
                                                                                                               82C                 100C|                                                                                                                   
                                                                                                                                    100D                                                                                                                   


Chain K from PDB  Type:PROTEIN  Length:217
 aligned with Q6GMX6_HUMAN | Q6GMX6 from UniProtKB/TrEMBL  Length:465

    Alignment length:222
                                                                                72                                                                                                                                                                        
                                                                              71 |                                          117  118                                                                                                                      
                                    29        39        49        59        69 | |    78        88        98       108        |-   |   124       134       144       154       164       174       184       194       204       214       224       234  
        Q6GMX6_HUMAN     20 QVQLQESGPGLVKPSETLSLTCTVSGGSISGYYWSWIRQPAGKGLEWIGRIY-TSGSTNYNPSLKSRVTMSVDTSKNQFSLKLSSVTAADTAVYYCARG----RFTYFDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK  236
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeee...eee.....eeeeeeee..hhh.eeeeeeee......eeeeeeehhhheeee.......eeeeee....eeeeee...hhhhheeeeeeeee.........ee...eeeee........eeee....-----..eeeeeeeeeee.....eeee.hhh....eee...ee.....eeeeeeeeee.........eeeeeehhhheeeeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                4d9l K    1 QVQLVQSGAEVKKPGSSVKVSCKASGGNFNTYTISWVRQAPGQGLEWMGRIIPIFGIVNPAQKFPGRVTINVDKSTNTAYMELSSLRSEDTAVYYCATSGVGLHFGYFDYWGQGTQVTVSSASTKGPSVFPLAPS-----GGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPK  214
                                    10        20        30        40        50  |     59        69        79   |||  86        96    |||102       112       122    |    -|      142       152       162       172       182       192       202       212  
                                                                              52A                            82A||               100A|||                        127   133                                                                                 
                                                                                                              82B|                100B||                                                                                                                  
                                                                                                               82C                 100C|                                                                                                                  
                                                                                                                                    100D                                                                                                                  


Chain L from PDB  Type:PROTEIN  Length:214
 aligned with Q6GMX4_HUMAN | Q6GMX4 from UniProtKB/TrEMBL  Length:236

    Alignment length:214
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229    
        Q6GMX4_HUMAN     20 QSVLTQPPSVSGAPGQRVTISCTGSSSNIGAGYDVHWYQQLPGTAPRLLIYGNSNRPSGVPDRFSGSKSGTSASLAITGLQAEDEADYYCQSYDSSLSGVMFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPT  233
               SCOP domains d4d9ll1 L:1-108 automated matches                                                                                d4d9ll2 L:109-209 automated matches                                                                   SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eeee....eeeeeee............eeeee......eeee.............eeeeee..eeeeeee..hhhhh.eeeeeeee....eeee...eeeee........eeeee..hhhhhhh..eeeeeeeeee.....eeeeee..eee...eee...ee.....eeeeeeeeehhhhhhhh..eeeeeee..eeeeeee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4d9l L    1 QSVLTQPPSVSGAPGQRVTISCTGSSSNIGAHYDVHWYQQLPGTAPKLLIYGNSNRPSGVPDRFSGSKSGTSASLAITGLQAEDEADYYCQSYDSSLSGYVFGTGTKVTVLGQPKANPTVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPT  209
                                    11        21      ||28        38        48        58        68        78        88       |96       106|      115       125       135       145       155       165       175       185       195       205    
                                    9|              27A||                                                                  95A|        106A                                                                                                       
                                    11               27B|                                                                   95B                                                                                                                   
                                                      27C                                                                                                                                                                                         


Chain M from PDB  Type:PROTEIN  Length:215
 aligned with Q6GMX4_HUMAN | Q6GMX4 from UniProtKB/TrEMBL  Length:236

    Alignment length:215
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229     
        Q6GMX4_HUMAN     20 QSVLTQPPSVSGAPGQRVTISCTGSSSNIGAGYDVHWYQQLPGTAPRLLIYGNSNRPSGVPDRFSGSKSGTSASLAITGLQAEDEADYYCQSYDSSLSGVMFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTE  234
               SCOP domains d4d9lm1 M:1-108 automated matches                                                                                d4d9lm2 M:109-210 automated matches                                                                    SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee....eeee....eeeeeee............eeeee......eeee.............eeeeee..eeeeeee..hhhhh.eeeeeeee....eeeee..eeeee........eeeee..hhhhhh...eeeeeeeeee.....eeeeee..eee...eee...ee.....eeeeeeeeehhhhhhhh..eeeeeee..eeeeeee.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4d9l M    1 QSVLTQPPSVSGAPGQRVTISCTGSSSNIGAHYDVHWYQQLPGTAPKLLIYGNSNRPSGVPDRFSGSKSGTSASLAITGLQAEDEADYYCQSYDSSLSGYVFGTGTKVTVLGQPKANPTVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTE  210
                                    11        21      ||28        38        48        58        68        78        88       |96       106|      115       125       135       145       155       165       175       185       195       205     
                                    9|              27A||                                                                  95A|        106A                                                                                                        
                                    11               27B|                                                                   95B                                                                                                                    
                                                      27C                                                                                                                                                                                          


Chain N from PDB  Type:PROTEIN  Length:215
 aligned with Q6GMX4_HUMAN | Q6GMX4 from UniProtKB/TrEMBL  Length:236

    Alignment length:215
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229     
        Q6GMX4_HUMAN     20 QSVLTQPPSVSGAPGQRVTISCTGSSSNIGAGYDVHWYQQLPGTAPRLLIYGNSNRPSGVPDRFSGSKSGTSASLAITGLQAEDEADYYCQSYDSSLSGVMFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTE  234
               SCOP domains d4d9ln1 N:1-108 automated matches                                                                                d4d9ln2 N:109-210 automated matches                                                                    SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee....eeee....eeeeeee....hhhhh...eeeee......eeee.............eeeeee..eeeeeee..hhhhheeeeeeeee....eeeee..eeeee........eeeee..hhhhhhh..eeeeeeeeee.....eeeeee..eee...eee...ee.....eeeeeeeeehhhhhhh...eeeeeee..eeeeeee.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4d9l N    1 QSVLTQPPSVSGAPGQRVTISCTGSSSNIGAHYDVHWYQQLPGTAPKLLIYGNSNRPSGVPDRFSGSKSGTSASLAITGLQAEDEADYYCQSYDSSLSGYVFGTGTKVTVLGQPKANPTVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTE  210
                                    11        21      ||28        38        48        58        68        78        88       |96       106|      115       125       135       145       155       165       175       185       195       205     
                                    9|              27A||                                                                  95A|        106A                                                                                                        
                                    11               27B|                                                                   95B                                                                                                                    
                                                      27C                                                                                                                                                                                          


Chain O from PDB  Type:PROTEIN  Length:215
 aligned with Q6GMX4_HUMAN | Q6GMX4 from UniProtKB/TrEMBL  Length:236

    Alignment length:215
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229     
        Q6GMX4_HUMAN     20 QSVLTQPPSVSGAPGQRVTISCTGSSSNIGAGYDVHWYQQLPGTAPRLLIYGNSNRPSGVPDRFSGSKSGTSASLAITGLQAEDEADYYCQSYDSSLSGVMFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTE  234
               SCOP domains d4d9lo1 O:1-108 automated matches                                                                                d4d9lo2 O:109-210 automated matches                                                                    SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee....eeee.....eeeeee....hhhhh...eeeee......eeee.............eeeeee..eeeeee...hhhhheeeeeeeee....eeeee..eeeee........eeeee..hhhhhhh..eeeeeeeeee.....eeeeee..ee....eee...ee.....eeeeeeeeehhhhhhhh..eeeeeee..eeeeeee.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4d9l O    1 QSVLTQPPSVSGAPGQRVTISCTGSSSNIGAHYDVHWYQQLPGTAPKLLIYGNSNRPSGVPDRFSGSKSGTSASLAITGLQAEDEADYYCQSYDSSLSGYVFGTGTKVTVLGQPKANPTVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTE  210
                                    11        21      ||28        38        48        58        68        78        88       |96       106|      115       125       135       145       155       165       175       185       195       205     
                                    9|              27A||                                                                  95A|        106A                                                                                                        
                                    11               27B|                                                                   95B                                                                                                                    
                                                      27C
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 8)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4D9L)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4D9L)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 4D9L)

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
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  Ligands, Modified Residues, Ions
(no "Ligands, Modified Residues, Ions" information available for 4d9l)
 
  Sites
(no "Sites" information available for 4d9l)
 
  Cis Peptide Bonds
    Glu H:148 - Pro H:149   [ RasMol ]  
    Glu I:148 - Pro I:149   [ RasMol ]  
    Glu J:148 - Pro J:149   [ RasMol ]  
    Glu K:148 - Pro K:149   [ RasMol ]  
    Ile L:27C - Gly L:28   [ RasMol ]  
    Leu I:138 - Gly I:139   [ RasMol ]  
    Leu K:138 - Gly K:139   [ RasMol ]  
    Phe H:146 - Pro H:147   [ RasMol ]  
    Phe I:146 - Pro I:147   [ RasMol ]  
    Phe J:146 - Pro J:147   [ RasMol ]  
    Phe K:146 - Pro K:147   [ RasMol ]  
    Ser J:187 - Ser J:188   [ RasMol ]  
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  Q6GMX6_HUMAN | Q6GMX6
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q6GMX6_HUMAN | Q6GMX6: 1bey 1za6 2jix 3b2u 3b2v 3d0l 3zl4 4fqq 4lkx 4npy 4qhk 4qhl 4qhm 4qhn

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4D9L)