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(-) Description

Title :  PFA2 FAB FRAGMENT, MONOCLINIC APO FORM
 
Authors :  A. S. Gardberg, C. Dealwis
Date :  13 Oct 06  (Deposition) - 09 Oct 07  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A,B,H,L
Biol. Unit 1:  H,L  (1x)
Biol. Unit 2:  A,B  (1x)
Keywords :  Pfa2, Wwddd, Cdr, Immune System (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. S. Gardberg, L. T. Dice, S. Ou, R. L. Rich, E. Helmbrecht, J. Ko, R. Wetzel, D. G. Myszka, P. H. Patterson, C. Dealwis
Molecular Basis For Passive Immunotherapy Of Alzheimer'S Disease
Proc. Natl. Acad. Sci. Usa V. 104 15659 2007
PubMed-ID: 17895381  |  Reference-DOI: 10.1073/PNAS.0705888104

(-) Compounds

Molecule 1 - IGG2A FAB FRAGMENT PFA2 KAPPA LIGHT CHAIN
    Chains: L, A
    Organism Common: HOUSE MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
    Other Details: HYBRIDOMA
    Strain: BALB/C
 
Molecule 2 - IGG2A FAB FRAGMENT PFA2 HEAVY CHAIN
    Chains: H, B
    Organism Common: HOUSE MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
    Other Details: HYBRIDOMA
    Strain: BALB/C

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABHL
Biological Unit 1 (1x):   HL
Biological Unit 2 (1x): AB  

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 11)

Asymmetric Unit (3, 11)
No.NameCountTypeFull Name
1ACM2Ligand/IonACETAMIDE
2CL1Ligand/IonCHLORIDE ION
3GOL8Ligand/IonGLYCEROL
Biological Unit 1 (2, 5)
No.NameCountTypeFull Name
1ACM1Ligand/IonACETAMIDE
2CL-1Ligand/IonCHLORIDE ION
3GOL4Ligand/IonGLYCEROL
Biological Unit 2 (2, 5)
No.NameCountTypeFull Name
1ACM1Ligand/IonACETAMIDE
2CL-1Ligand/IonCHLORIDE ION
3GOL4Ligand/IonGLYCEROL

(-) Sites  (11, 11)

Asymmetric Unit (11, 11)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREARG H:94 , ALA H:96 , TRP H:100DBINDING SITE FOR RESIDUE CL H 301
02AC2SOFTWAREARG H:213 , PRO L:118 , PRO L:119 , TYR L:185 , ARG L:210 , CYS L:213BINDING SITE FOR RESIDUE ACM L 1219
03AC3SOFTWAREASN A:209 , GLU A:212 , CYS A:213 , VAL B:127BINDING SITE FOR RESIDUE ACM A 1219
04AC4SOFTWAREPRO H:167 , THR H:176 , SER H:178 , LEU L:159 , SER L:161 , SER L:175 , SER L:176 , THR L:177BINDING SITE FOR RESIDUE GOL L 401
05AC5SOFTWARELEU L:37 , GLY L:57 , ARG L:61 , GLU L:81 , ASP L:82 , HOH L:1293BINDING SITE FOR RESIDUE GOL L 407
06AC6SOFTWAREGLU H:148 , VAL H:150 , ALA H:168BINDING SITE FOR RESIDUE GOL H 405
07AC7SOFTWAREASP B:55 , LYS B:57 , ASP H:56 , ASN H:58 , HIS H:97BINDING SITE FOR RESIDUE GOL H 408
08AC8SOFTWARELEU A:159 , SER A:161 , SER A:175 , SER A:176 , THR A:177 , PRO B:167 , VAL B:169 , THR B:176 , LEU B:177 , SER B:178BINDING SITE FOR RESIDUE GOL A 402
09AC9SOFTWARELEU A:37 , GLY A:57 , PRO A:59 , PHE A:62 , GLU A:81 , ASP A:82BINDING SITE FOR RESIDUE GOL A 403
10BC1SOFTWAREGLU B:148 , PRO B:149 , VAL B:150 , PRO B:167 , ALA B:168 , HOH B:430BINDING SITE FOR RESIDUE GOL B 404
11BC2SOFTWARETRP B:52 , TRP B:53 , ASP B:54 , ASP B:56BINDING SITE FOR RESIDUE GOL B 406

(-) SS Bonds  (8, 8)

Asymmetric Unit
No.Residues
1A:23 -A:88
2A:133 -A:193
3B:22 -B:92
4B:140 -B:195
5H:22 -H:92
6H:140 -H:195
7L:23 -L:88
8L:133 -L:193

(-) Cis Peptide Bonds  (22, 22)

Asymmetric Unit
No.Residues
1Thr L:7 -Pro L:8
2Val L:94 -Pro L:95
3Tyr L:139 -Pro L:140
4Ser L:200 -Thr L:201
5Ser H:32 -Gly H:33
6Cys H:128 -Gly H:129
7Gly H:130 -Thr H:131
8Phe H:146 -Pro H:147
9Glu H:148 -Pro H:149
10Ser H:172 -Gly H:173
11Trp H:188 -Pro H:189
12Thr A:7 -Pro A:8
13Val A:94 -Pro A:95
14Tyr A:139 -Pro A:140
15Ser B:32 -Gly B:33
16Lys B:64 -Ser B:65
17Leu B:100A-Gly B:100B
18Cys B:128 -Gly B:129
19Phe B:146 -Pro B:147
20Glu B:148 -Pro B:149
21Ser B:172 -Gly B:173
22Trp B:188 -Pro B:189

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2IQA)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2IQA)

(-) Exons   (0, 0)

(no "Exon" information available for 2IQA)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:219
 aligned with A2NHM3_MOUSE | A2NHM3 from UniProtKB/TrEMBL  Length:219

    Alignment length:219
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210         
        A2NHM3_MOUSE      1 DVLMTQTPLSLPVSLGDQASISCRSSQSIVHTNGNTYLEWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYYCFQGSHVPRTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC  219
               SCOP domains d2iqaa1 A:1-106A automated matches                                                                              d2iqaa2 A:107-213 automated matches                                                                         SCOP domains
               CATH domains 2iqaA01 A:1-107 Immunoglobulins                                                                                  -2iqaA02 A:109-208 Immunoglobulins                                                                   ----- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..eeee.....eeeeeee..........................................................hhhhh.....................................hhhhhhh.......................................................hhhhh........................hhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                2iqa A    1 DVLMTQTPLSLPVSLGDQASISCRSSQSIVHSNGNTYLEWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYYCFQGSHVPLTFGAGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC  213
                                    10        20       27C||      35        45        55        65        75        85        95       105 |     114       124       134       144       154       164       174       184       194       204         
                                                     27A||||                                                                            106A                                                                                                           
                                                      27B|||                                                                                                                                                                                           
                                                       27C||                                                                                                                                                                                           
                                                        27D|                                                                                                                                                                                           
                                                         27E                                                                                                                                                                                           


Chain A from PDB  Type:PROTEIN  Length:219
 aligned with KV2A7_MOUSE | P01631 from UniProtKB/Swiss-Prot  Length:113

    Alignment length:219
                                                                                                                                          113                                                                                                          
                                    10        20        30        40        50        60        70        80        90       100       110  |      -         -         -         -         -         -         -         -         -         -         
         KV2A7_MOUSE      1 DVVMTQTPLSLPVSLGDQASISCRSSQSLVHSNGNTYLNWYLQKAGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGIYFCSQTTHVPPTFGGGTKLEIKR----------------------------------------------------------------------------------------------------------    -
               SCOP domains d2iqaa1 A:1-106A automated matches                                                                              d2iqaa2 A:107-213 automated matches                                                                         SCOP domains
               CATH domains 2iqaA01 A:1-107 Immunoglobulins                                                                                  -2iqaA02 A:109-208 Immunoglobulins                                                                   ----- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..eeee.....eeeeeee..........................................................hhhhh.....................................hhhhhhh.......................................................hhhhh........................hhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                2iqa A    1 DVLMTQTPLSLPVSLGDQASISCRSSQSIVHSNGNTYLEWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYYCFQGSHVPLTFGAGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC  213
                                    10        20       27C||      35        45        55        65        75        85        95       105 |     114       124       134       144       154       164       174       184       194       204         
                                                     27A||||                                                                            106A                                                                                                           
                                                      27B|||                                                                                                                                                                                           
                                                       27C||                                                                                                                                                                                           
                                                        27D|                                                                                                                                                                                           
                                                         27E                                                                                                                                                                                           


Chain B from PDB  Type:PROTEIN  Length:220
 aligned with Q811U5_MOUSE | Q811U5 from UniProtKB/TrEMBL  Length:118

    Alignment length:220
                                                                                                                                   102                                                                                                                  
                                                                                                                                101  |                                                                                                                  
                                                                                                                               100|  |                                                                                                                  
                                                                                                                             99  ||  |             118                                                                                                  
                                    10        20        30        40        50        60        70        80        90        |- ||  | 106       116 |       -         -         -         -         -         -         -         -         -         -
        Q811U5_MOUSE      1 QVTLKESGPGILQPSQTLSLTCSFSGFSLRTSGMGVGWIRQPSGKGLEWLAHIWWDDDKRYNPALKSRLTISKDTSSNQVFLKIASVDTADTATYYCAQ--IN--PAWFAYWGQGTLVTVSA--------------------------------------------------------------------------------------------------    -
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2iqaB01 B:1-113 Immunoglobulins                                                                                           2iqaB02 B:114-212 Immunoglobulins                                                                - CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee...ee.....eeeeeeee..............................................................hhhhh.................................eeeee................................hhh.........................................hhhh.......... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                2iqa B    1 QVTLKESGPGILKPSQTLSLTCSLSGFSLRTSGMGVGWIRQPSGKGLEWLAHIWWDDDKNYNPSLKSQLTISKDTSRNQVFLKITSVDTADTATYYCVRRAHNVLGDWFAYWGQGTLVTVSAAKTTAPSVYPLAPVCGTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSGLYTLSSSVTVTSSTWPSQSITCNVAHPASSTKVDKKIEPR  213
                                    10        20        30     || 38        48        58        68        78    ||| 85        95  |||||101       111       121       133       143       153       163       173       183       193       203       213
                                                             35A|                                             82A||              98||||||                          129|                                                                                 
                                                              35B                                              82B|              100|||||                           132                                                                                 
                                                                                                                82C              100A||||                                                                                                               
                                                                                                                                  100B|||                                                                                                               
                                                                                                                                   100C||                                                                                                               
                                                                                                                                    100D|                                                                                                               
                                                                                                                                     100E                                                                                                               


Chain H from PDB  Type:PROTEIN  Length:221
 aligned with Q811U5_MOUSE | Q811U5 from UniProtKB/TrEMBL  Length:118

    Alignment length:221
                                                                                                                                   102                                                                                                                   
                                                                                                                                101  |                                                                                                                   
                                                                                                                               100|  |                                                                                                                   
                                                                                                                             99  ||  |             118                                                                                                   
                                    10        20        30        40        50        60        70        80        90        |- ||  | 106       116 |       -         -         -         -         -         -         -         -         -         - 
        Q811U5_MOUSE      1 QVTLKESGPGILQPSQTLSLTCSFSGFSLRTSGMGVGWIRQPSGKGLEWLAHIWWDDDKRYNPALKSRLTISKDTSSNQVFLKIASVDTADTATYYCAQ--IN--PAWFAYWGQGTLVTVSA---------------------------------------------------------------------------------------------------    -
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2iqaH01 H:1-113 Immunoglobulins                                                                                           2iqaH02 H:114-212 Immunoglobulins                                                                 - CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee...ee.....eeeeeeee.....................................hhhh.....................hhhhh.................................eeeee.................................hhh.........................................hhhh.......... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                2iqa H    1 QVTLKESGPGILKPSQTLSLTCSLSGFSLRTSGMGVGWIRQPSGKGLEWLAHIWWDDDKNYNPSLKSQLTISKDTSRNQVFLKITSVDTADTATYYCVRRAHNVLGDWFAYWGQGTLVTVSAAKTTAPSVYPLAPVCGGTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSGLYTLSSSVTVTSSTWPSQSITCNVAHPASSTKVDKKIEPR  213
                                    10        20        30     || 38        48        58        68        78    ||| 85        95  |||||101       111       121       131|      142       152       162       172       182       192       202       212 
                                                             35A|                                             82A||              98||||||                            131|                                                                                
                                                              35B                                              82B|              100|||||                             133                                                                                
                                                                                                                82C              100A||||                                                                                                                
                                                                                                                                  100B|||                                                                                                                
                                                                                                                                   100C||                                                                                                                
                                                                                                                                    100D|                                                                                                                
                                                                                                                                     100E                                                                                                                


Chain L from PDB  Type:PROTEIN  Length:219
 aligned with A2NHM3_MOUSE | A2NHM3 from UniProtKB/TrEMBL  Length:219

    Alignment length:219
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210         
        A2NHM3_MOUSE      1 DVLMTQTPLSLPVSLGDQASISCRSSQSIVHTNGNTYLEWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYYCFQGSHVPRTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC  219
               SCOP domains d2iqal1 L:1-106A automated matches                                                                              d2iqal2 L:107-213 automated matches                                                                         SCOP domains
               CATH domains 2iqaL01 L:1-107 Immunoglobulins                                                                                  -2iqaL02 L:109-208 Immunoglobulins                                                                   ----- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..eeee.....eeeeeee..........................................................hhhhh.....................................hhhhhhh.......................................................hhhhh........................... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                2iqa L    1 DVLMTQTPLSLPVSLGDQASISCRSSQSIVHSNGNTYLEWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYYCFQGSHVPLTFGAGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC  213
                                    10        20       27C||      35        45        55        65        75        85        95       105 |     114       124       134       144       154       164       174       184       194       204         
                                                     27A||||                                                                            106A                                                                                                           
                                                      27B|||                                                                                                                                                                                           
                                                       27C||                                                                                                                                                                                           
                                                        27D|                                                                                                                                                                                           
                                                         27E                                                                                                                                                                                           


Chain L from PDB  Type:PROTEIN  Length:219
 aligned with KV2A7_MOUSE | P01631 from UniProtKB/Swiss-Prot  Length:113

    Alignment length:219
                                                                                                                                          113                                                                                                          
                                    10        20        30        40        50        60        70        80        90       100       110  |      -         -         -         -         -         -         -         -         -         -         
         KV2A7_MOUSE      1 DVVMTQTPLSLPVSLGDQASISCRSSQSLVHSNGNTYLNWYLQKAGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGIYFCSQTTHVPPTFGGGTKLEIKR----------------------------------------------------------------------------------------------------------    -
               SCOP domains d2iqal1 L:1-106A automated matches                                                                              d2iqal2 L:107-213 automated matches                                                                         SCOP domains
               CATH domains 2iqaL01 L:1-107 Immunoglobulins                                                                                  -2iqaL02 L:109-208 Immunoglobulins                                                                   ----- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..eeee.....eeeeeee..........................................................hhhhh.....................................hhhhhhh.......................................................hhhhh........................... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                2iqa L    1 DVLMTQTPLSLPVSLGDQASISCRSSQSIVHSNGNTYLEWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYYCFQGSHVPLTFGAGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC  213
                                    10        20       27C||      35        45        55        65        75        85        95       105 |     114       124       134       144       154       164       174       184       194       204         
                                                     27A||||                                                                            106A                                                                                                           
                                                      27B|||                                                                                                                                                                                           
                                                       27C||                                                                                                                                                                                           
                                                        27D|                                                                                                                                                                                           
                                                         27E
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 4)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (1, 8)

Asymmetric Unit
(-)
Class: Mainly Beta (13760)
(-)
Architecture: Sandwich (5577)
(-)
Topology: Immunoglobulin-like (3897)
(-)
Homologous Superfamily: Immunoglobulins (2282)
(-)
House mouse (Mus musculus) (616)
1a2iqaA02A:109-208
1b2iqaA01A:1-107
1c2iqaL01L:1-107
1d2iqaH02H:114-212
1e2iqaB02B:114-212
1f2iqaB01B:1-113
1g2iqaH01H:1-113
1h2iqaL02L:109-208

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2IQA)

(-) Gene Ontology  (2, 3)

Asymmetric Unit(hide GO term definitions)
Chain A,L   (A2NHM3_MOUSE | A2NHM3)

Chain A,L   (KV2A7_MOUSE | P01631)
molecular function
    GO:0003823    antigen binding    Interacting selectively and non-covalently with an antigen, any substance which is capable of inducing a specific immune response and of reacting with the products of that response, the specific antibody or specifically sensitized T-lymphocytes, or both. Binding may counteract the biological activity of the antigen.

Chain B,H   (Q811U5_MOUSE | Q811U5)

 Visualization

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Asymmetric Unit
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  Cis Peptide Bonds
    Cys B:128 - Gly B:129   [ RasMol ]  
    Cys H:128 - Gly H:129   [ RasMol ]  
    Glu B:148 - Pro B:149   [ RasMol ]  
    Glu H:148 - Pro H:149   [ RasMol ]  
    Gly H:130 - Thr H:131   [ RasMol ]  
    Leu B:100A - Gly B:100B  [ RasMol ]  
    Lys B:64 - Ser B:65   [ RasMol ]  
    Phe B:146 - Pro B:147   [ RasMol ]  
    Phe H:146 - Pro H:147   [ RasMol ]  
    Ser B:172 - Gly B:173   [ RasMol ]  
    Ser B:32 - Gly B:33   [ RasMol ]  
    Ser H:172 - Gly H:173   [ RasMol ]  
    Ser H:32 - Gly H:33   [ RasMol ]  
    Ser L:200 - Thr L:201   [ RasMol ]  
    Thr A:7 - Pro A:8   [ RasMol ]  
    Thr L:7 - Pro L:8   [ RasMol ]  
    Trp B:188 - Pro B:189   [ RasMol ]  
    Trp H:188 - Pro H:189   [ RasMol ]  
    Tyr A:139 - Pro A:140   [ RasMol ]  
    Tyr L:139 - Pro L:140   [ RasMol ]  
    Val A:94 - Pro A:95   [ RasMol ]  
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  Q811U5_MOUSE | Q811U5
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        A2NHM3_MOUSE | A2NHM3: 4p3d
        GCAB_MOUSE | P01864: 1bog 1cfn 1cfq 1cfs 1cft 1hh6 1hh9 1hi6 2ipt 2iq9 2vwe
        KV2A7_MOUSE | P01631: 1bfv 1cfv 1dlf 1maj 1mak 1n4x 1svz 1wz1 2bfv 2dlf 2hkf 2hkh 2ipt 2o5x 2o5y 2o5z 2r0w 2vq1
UniProtKB/TrEMBL
        A2NHM3_MOUSE | A2NHM3: 1cbv 1f3d 1lo0 1m71 1m7d 1m7i 1mnu 1mpa 1nbv 1plg 1pz5 1qfu 1t2q 1zea 2a1w 2dqt 2dqu 2dtm 2ipt 2ipu 2iq9 2mpa 2ojz 2ok0 2r0w 2r0z 3bae 3bkc 3bkj 3bkm 3bqu 3eys 3eyu 3uo1 3uyr 3v4u 3v52 3we6 4f37 4hdi 4ocx 4ocy 4q0x 4tpr 4tqe
        Q811U5_MOUSE | Q811U5: 2r0w 3bae

(-) Related Entries Specified in the PDB File

2ipt PFA1 FAB FRAGMENT
2ipu PFA1 FAB FRAGMENT COMPLEXED WITH ABETA 1-8 PEPTIDE
2iq9 PFA2 FAB FRAGMENT, TRICLINIC APO FORM
2iqb PFA2 FAB FRAGMENT BOUND TO ABETA 1-8