2H4M - JenaLib

Asymmetric/Biological Unit (24, 48)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.1a	ENST00000337273	1a	ENSE00002137257	chr5:72112139-72112579	441	TNPO1_HUMAN	1-5	5	0	-	-
1.5	ENST00000337273	5	ENSE00001678683	chr5:72144212-72144325	114	TNPO1_HUMAN	6-43	38	2	A:6-35 B:6-35	30 30
1.6c	ENST00000337273	6c	ENSE00000752304	chr5:72147071-72147146	76	TNPO1_HUMAN	44-69	26	2	A:36-61 (gaps) B:36-61 (gaps)	26 26
1.7c	ENST00000337273	7c	ENSE00000534707	chr5:72151601-72151750	150	TNPO1_HUMAN	69-119	51	2	A:61-111 (gaps) B:61-111 (gaps)	51 51
1.8a	ENST00000337273	8a	ENSE00000752327	chr5:72157635-72157741	107	TNPO1_HUMAN	119-154	36	2	A:111-146 B:111-146	36 36
1.10b	ENST00000337273	10b	ENSE00000752440	chr5:72161423-72161556	134	TNPO1_HUMAN	155-199	45	2	A:147-191 B:147-191 (gaps)	45 45
1.12a	ENST00000337273	12a	ENSE00001659385	chr5:72168466-72168547	82	TNPO1_HUMAN	199-226	28	2	A:191-218 B:191-218	28 28
1.13	ENST00000337273	13	ENSE00001619386	chr5:72171442-72171564	123	TNPO1_HUMAN	227-267	41	2	A:219-259 B:219-259	41 41
1.14	ENST00000337273	14	ENSE00001752263	chr5:72173055-72173173	119	TNPO1_HUMAN	268-307	40	2	A:260-299 B:260-299	40 40
1.15	ENST00000337273	15	ENSE00001797615	chr5:72178294-72178354	61	TNPO1_HUMAN	307-327	21	2	A:299-319 B:299-319	21 21
1.16c	ENST00000337273	16c	ENSE00001805396	chr5:72178891-72179059	169	TNPO1_HUMAN	328-384	57	2	A:369-376 B:369-376	8 8
1.17b	ENST00000337273	17b	ENSE00001752488	chr5:72182897-72183049	153	TNPO1_HUMAN	384-435	52	2	A:376-427 B:376-427	52 52
1.18a	ENST00000337273	18a	ENSE00001670694	chr5:72183905-72184130	226	TNPO1_HUMAN	435-510	76	2	A:427-502 B:427-502	76 76
1.19	ENST00000337273	19	ENSE00001603550	chr5:72185613-72185784	172	TNPO1_HUMAN	510-567	58	2	A:502-559 B:502-559	58 58
1.20	ENST00000337273	20	ENSE00001611908	chr5:72187637-72187723	87	TNPO1_HUMAN	568-596	29	2	A:560-588 B:560-588	29 29
1.21b	ENST00000337273	21b	ENSE00001762530	chr5:72188966-72189073	108	TNPO1_HUMAN	597-632	36	2	A:589-624 B:589-624	36 36
1.22a	ENST00000337273	22a	ENSE00001717735	chr5:72189204-72189362	159	TNPO1_HUMAN	633-685	53	2	A:625-677 B:625-677	53 53
1.23	ENST00000337273	23	ENSE00001743796	chr5:72189443-72189530	88	TNPO1_HUMAN	686-715	30	2	A:678-707 B:678-707	30 30
1.24	ENST00000337273	24	ENSE00001660046	chr5:72192285-72192383	99	TNPO1_HUMAN	715-748	34	2	A:707-740 B:707-740	34 34
1.25	ENST00000337273	25	ENSE00001687148	chr5:72192883-72192978	96	TNPO1_HUMAN	748-780	33	2	A:740-772 B:740-772	33 33
1.26	ENST00000337273	26	ENSE00001743811	chr5:72195833-72195908	76	TNPO1_HUMAN	780-805	26	2	A:772-797 B:772-797	26 26
1.27b	ENST00000337273	27b	ENSE00001600924	chr5:72196801-72196900	100	TNPO1_HUMAN	805-838	34	2	A:797-830 B:797-830	34 34
1.28	ENST00000337273	28	ENSE00001730129	chr5:72199536-72199610	75	TNPO1_HUMAN	839-863	25	2	A:831-855 B:831-855	25 25
1.29c	ENST00000337273	29c	ENSE00001718138	chr5:72201130-72201272	143	TNPO1_HUMAN	864-898	35	2	A:856-890 B:856-890	35 35
1.30f	ENST00000337273	30f	ENSE00001925200	chr5:72204536-72212560	8025	TNPO1_HUMAN	-	0	0	-	-

2.1a	ENST00000340913	1a	ENSE00001482313	chr12:54674488-54674606	119	ROA1_HUMAN	1-5	5	0	-	-
2.2	ENST00000340913	2	ENSE00000920024	chr12:54675170-54675286	117	ROA1_HUMAN	6-44	39	0	-	-
2.3	ENST00000340913	3	ENSE00000920026	chr12:54675579-54675725	147	ROA1_HUMAN	45-93	49	0	-	-
2.4	ENST00000340913	4	ENSE00000920027	chr12:54675874-54676084	211	ROA1_HUMAN	94-164	71	0	-	-
2.5	ENST00000340913	5	ENSE00000920030	chr12:54676178-54676270	93	ROA1_HUMAN	164-195	32	0	-	-
2.6	ENST00000340913	6	ENSE00000920032	chr12:54676357-54676449	93	ROA1_HUMAN	195-226	32	0	-	-
2.7	ENST00000340913	7	ENSE00000920033	chr12:54676584-54676658	75	ROA1_HUMAN	226-251	26	0	-	-
2.8a	ENST00000340913	8a	ENSE00001690592	chr12:54676863-54677018	156	ROA1_HUMAN	251-303	53	0	-	-
2.9a	ENST00000340913	9a	ENSE00001532273	chr12:54677596-54677751	156	ROA1_HUMAN	303-355	53	2	C:267-289 D:263-289	23 27
2.10	ENST00000340913	10	ENSE00001378946	chr12:54678042-54678101	60	ROA1_HUMAN	355-372	18	0	-	-
2.11	ENST00000340913	11	ENSE00001532276	chr12:54678333-54679028	696	ROA1_HUMAN	-	0	0	-	-

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:827
 aligned with TNPO1_HUMAN | Q92973 from UniProtKB/Swiss-Prot  Length:898

    Alignment length:885
                                    23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513       523       533       543       553       563       573       583       593       603       613       623       633       643       653       663       673       683       693       703       713       723       733       743       753       763       773       783       793       803       813       823       833       843       853       863       873       883       893     
          TNPO1_HUMAN    14 KPDEQGLQQILQLLKESQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEEDETIPDSEQDIRPRFHRSRTVAQQHDEDGIEEEDDDDDEIDDDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSGVIQDFIFFCDAVASWINPKDDLRDMFCKILHGFKNQVGDENWRRFSDQFPLPLKERLAAFYGV 898
               SCOP domains d2h4ma_ A: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhh..hhhhhh......hhhhhhhh.-------hhhhhhhhhhh...........hhhhhhhhhhh.--.......hhhhhhhhhhhh....hhhhhhhhhhhhhhhhhh.......hhhhhhhhhh...hhhhhhhhhhhhhhhhhhh....hhhhhh.hhhhhhhhhhhh....hhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh..hhhhhhh.hhhhhhhhhhhh...hhhhhhhhh-------------------------------------------------.....hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhh..hhhhhhh.hhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------E------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ---------------------------IMPORTIN_B_NT  PDB: A:33-101 UniProt: 41-109                         --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.5  PDB: A:6-35         Exon 1.6c UniProt: 44-69  -------------------------------------------------Exon 1.8a  PDB: A:111-146           Exon 1.10b  PDB: A:147-191 UniProt: 155-199  ---------------------------Exon 1.13  PDB: A:219-259                Exon 1.14  PDB: A:260-299               --------------------Exon 1.16c  PDB: A:369-376 UniProt: 328-384 [INCOMPLETE] --------------------------------------------------Exon 1.18a  PDB: A:427-502 UniProt: 435-510                                 ---------------------------------------------------------Exon 1.20  PDB: A:560-588    Exon 1.21b  PDB: A:589-624          Exon 1.22a  PDB: A:625-677 UniProt: 633-685          Exon 1.23  PDB: A:678-707     --------------------------------Exon 1.25  PDB: A:740-772        ------------------------Exon 1.27b  PDB: A:797-830        Exon 1.28  PDB: A:831-855Exon 1.29c  PDB: A:856-890          Transcript 1 (1)
           Transcript 1 (2) -------------------------------------------------------Exon 1.7c  PDB: A:61-111 (gaps) UniProt: 69-119    -------------------------------------------------------------------------------Exon 1.12a  PDB: A:191-218  --------------------------------------------------------------------------------Exon 1.15            --------------------------------------------------------Exon 1.17b  PDB: A:376-427 UniProt: 384-435         --------------------------------------------------------------------------Exon 1.19  PDB: A:502-559 UniProt: 510-567                ---------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.24  PDB: A:707-740         -------------------------------Exon 1.26  PDB: A:772-797 --------------------------------------------------------------------------------------------- Transcript 1 (2)
                 2h4m A   6 KPDEQGLQQILQLLKESQSPDTTIQRTVQQK-------PDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVK--FQNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLK-------------------------------------------------TISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSGVIQDFIFFCDAVASWINPKDDLRDMFCKILHGFKNQVGDENWRRFSDQFPLPLKERLAAFYGV 890
                                    15        25        35|       45        55        65        75 |  |   85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315   |     -         -         -         -         -   |   375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525       535       545       555       565       575       585       595       605       615       625       635       645       655       665       675       685       695       705       715       725       735       745       755       765       775       785       795       805       815       825       835       845       855       865       875       885     
                                                         36      44                               77 80                                                                                                                                                                                                                                            319                                               369

Chain B from PDB  Type:PROTEIN  Length:810
 aligned with TNPO1_HUMAN | Q92973 from UniProtKB/Swiss-Prot  Length:898

    Alignment length:885
                                    23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513       523       533       543       553       563       573       583       593       603       613       623       633       643       653       663       673       683       693       703       713       723       733       743       753       763       773       783       793       803       813       823       833       843       853       863       873       883       893     
          TNPO1_HUMAN    14 KPDEQGLQQILQLLKESQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEEDETIPDSEQDIRPRFHRSRTVAQQHDEDGIEEEDDDDDEIDDDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSGVIQDFIFFCDAVASWINPKDDLRDMFCKILHGFKNQVGDENWRRFSDQFPLPLKERLAAFYGV 898
               SCOP domains d2h4mb_ B: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...................hhhhhhhhhhh.-------..hhhhhhhhh.---.......hhhhhhhhhh----......hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhh.......hhhhhhhhhh...hhhhhhhhhhhhhhhhh.------------.hhhhhhhhhhhhh..hhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhh..hhhhhhhhh-------------------------------------------------.....hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------E------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ---------------------------IMPORTIN_B_NT  PDB: B:33-101 UniProt: 41-109                         --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.5  PDB: B:6-35         Exon 1.6c UniProt: 44-69  -------------------------------------------------Exon 1.8a  PDB: B:111-146           Exon 1.10b  PDB: B:147-191 (gaps)            ---------------------------Exon 1.13  PDB: B:219-259                Exon 1.14  PDB: B:260-299               --------------------Exon 1.16c  PDB: B:369-376 UniProt: 328-384 [INCOMPLETE] --------------------------------------------------Exon 1.18a  PDB: B:427-502 UniProt: 435-510                                 ---------------------------------------------------------Exon 1.20  PDB: B:560-588    Exon 1.21b  PDB: B:589-624          Exon 1.22a  PDB: B:625-677 UniProt: 633-685          Exon 1.23  PDB: B:678-707     --------------------------------Exon 1.25  PDB: B:740-772        ------------------------Exon 1.27b  PDB: B:797-830        Exon 1.28  PDB: B:831-855Exon 1.29c  PDB: B:856-890          Transcript 1 (1)
           Transcript 1 (2) -------------------------------------------------------Exon 1.7c  PDB: B:61-111 (gaps) UniProt: 69-119    -------------------------------------------------------------------------------Exon 1.12a  PDB: B:191-218  --------------------------------------------------------------------------------Exon 1.15            --------------------------------------------------------Exon 1.17b  PDB: B:376-427 UniProt: 384-435         --------------------------------------------------------------------------Exon 1.19  PDB: B:502-559 UniProt: 510-567                ---------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.24  PDB: B:707-740         -------------------------------Exon 1.26  PDB: B:772-797 --------------------------------------------------------------------------------------------- Transcript 1 (2)
                 2h4m B   6 KPDEQGLQQILQLLKESQSPDTTIQRTVQQK-------PDFNNYLIFVLT---SEDEPTRSLSGLILKNN----FQNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICED------------PLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLK-------------------------------------------------TISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSGVIQDFIFFCDAVASWINPKDDLRDMFCKILHGFKNQVGDENWRRFSDQFPLPLKERLAAFYGV 890
                                    15        25        35|       45        55   |    65        75    |   85        95       105       115       125       135       145       155  |      -     | 175       185       195       205       215       225       235       245       255       265       275       285       295       305       315   |     -         -         -         -         -   |   375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525       535       545       555       565       575       585       595       605       615       625       635       645       655       665       675       685       695       705       715       725       735       745       755       765       775       785       795       805       815       825       835       845       855       865       875       885     
                                                         36      44         55  59              75   80                                                                           158          171                                                                                                                                                 319                                               369

Chain C from PDB  Type:PROTEIN  Length:23
 aligned with ROA1_HUMAN | P09651 from UniProtKB/Swiss-Prot  Length:372

    Alignment length:23
                                   328       338   
           ROA1_HUMAN   319 NNQSSNFGPMKGGNFGGRSSGPY 341
               SCOP domains ----------------------- SCOP domains
               CATH domains ----------------------- CATH domains
               Pfam domains ----------------------- Pfam domains
         Sec.struct. author ....................... Sec.struct. author
                 SAPs(SNPs) S--------------------S- SAPs(SNPs)
                    PROSITE ----------------------- PROSITE
               Transcript 2 Exon 2.9a [INCOMPLETE]  Transcript 2
                 2h4m C 267 NNQSSNFGPMKGGNFGGRSSGPY 289
                                   276       286

Chain D from PDB  Type:PROTEIN  Length:27
 aligned with ROA1_HUMAN | P09651 from UniProtKB/Swiss-Prot  Length:372

    Alignment length:27
                                   324       334       
           ROA1_HUMAN   315 FGNYNNQSSNFGPMKGGNFGGRSSGPY 341
               SCOP domains --------------------------- SCOP domains
               CATH domains --------------------------- CATH domains
               Pfam domains --------------------------- Pfam domains
         Sec.struct. author ........................... Sec.struct. author
                 SAPs(SNPs) ----S--------------------S- SAPs(SNPs)
                    PROSITE --------------------------- PROSITE
               Transcript 2 Exon 2.9a  PDB: D:263-289   Transcript 2
                 2h4m D 263 FGNYNNQSSNFGPMKGGNFGGRSSGPY 289
                                   272       282

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (1, 2)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (42, 48)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B (TNPO1_HUMAN | Q92973)

molecular function
	GO:0008536	Ran GTPase binding	Interacting selectively and non-covalently with Ran, a conserved Ras-like GTP-binding protein, implicated in nucleocytoplasmic transport, cell cycle progression, spindle assembly, nuclear organization and nuclear envelope (NE) assembly.
	GO:0008139	nuclear localization sequence binding	Interacting selectively and non-covalently with a nuclear localization sequence, a specific peptide sequence that acts as a signal to localize the protein within the nucleus.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
	GO:0008565	protein transporter activity	Enables the directed movement of proteins into, out of or within a cell, or between cells.
biological process
	GO:0006607	NLS-bearing protein import into nucleus	The directed movement of a protein bearing a nuclear localization signal (NLS) from the cytoplasm into the nucleus, across the nuclear membrane.
	GO:0006886	intracellular protein transport	The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
	GO:0000059	obsolete protein import into nucleus, docking	OBSOLETE. A protein complex assembly process that contributes to protein import into the nucleus, and that results in the association of a cargo protein, a carrier protein such as an importin alpha/beta heterodimer, and a nucleoporin located at the periphery of the nuclear pore complex.
	GO:0000060	protein import into nucleus, translocation	A protein transport process that contributes to protein import into the nucleus, and that results in the vectorial transfer of a cargo-carrier protein complex through the nuclear pore complex from the cytoplasmic side to the nucleoplasmic side of the nuclear envelope.
	GO:0015031	protein transport	The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
	GO:0043488	regulation of mRNA stability	Any process that modulates the propensity of mRNA molecules to degradation. Includes processes that both stabilize and destabilize mRNAs.
	GO:0006610	ribosomal protein import into nucleus	The directed movement of a ribosomal protein from the cytoplasm into the nucleus, across the nuclear membrane.
	GO:0006810	transport	The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
	GO:0016032	viral process	A multi-organism process in which a virus is a participant. The other participant is the host. Includes infection of a host cell, replication of the viral genome, and assembly of progeny virus particles. In some cases the viral genetic material may integrate into the host genome and only subsequently, under particular circumstances, 'complete' its life cycle.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0005829	cytosol	The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
	GO:0070062	extracellular exosome	A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
	GO:0031965	nuclear membrane	Either of the lipid bilayers that surround the nucleus and form the nuclear envelope; excludes the intermembrane space.
	GO:0034399	nuclear periphery	The portion of the nuclear lumen proximal to the inner nuclear membrane.
	GO:0005634	nucleus	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

Chain C,D (ROA1_HUMAN | P09651)

molecular function
	GO:0098505	G-rich strand telomeric DNA binding	Interacting selectively and non-covalently with G-rich, single-stranded, telomere-associated DNA.
	GO:0003723	RNA binding	Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
	GO:0003676	nucleic acid binding	Interacting selectively and non-covalently with any nucleic acid.
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
	GO:0003697	single-stranded DNA binding	Interacting selectively and non-covalently with single-stranded DNA.
	GO:0003727	single-stranded RNA binding	Interacting selectively and non-covalently with single-stranded RNA.
	GO:0061752	telomeric repeat-containing RNA binding	Interacting selectively and non-covalently with long non-coding RNA molecules transcribed from subtelomeric regions in most eukaryotes. Telomeric repeat-containing RNA (TERRA) molecules consist of subtelomeric-derived sequences and G-rich telomeric repeats.
biological process
	GO:0006405	RNA export from nucleus	The directed movement of RNA from the nucleus to the cytoplasm.
	GO:0008380	RNA splicing	The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA.
	GO:0008543	fibroblast growth factor receptor signaling pathway	The series of molecular signals generated as a consequence of a fibroblast growth factor receptor binding to one of its physiological ligands.
	GO:0010467	gene expression	The process in which a gene's sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA or circRNA (for protein-coding genes) and the translation of that mRNA or circRNA into protein. Protein maturation is included when required to form an active form of a product from an inactive precursor form.
	GO:0006397	mRNA processing	Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide.
	GO:0000398	mRNA splicing, via spliceosome	The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.
	GO:0051028	mRNA transport	The directed movement of mRNA, messenger ribonucleic acid, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
	GO:0032211	negative regulation of telomere maintenance via telomerase	Any process that stops, prevents, or reduces the frequency, rate or extent of the addition of telomeric repeats by telomerase.
	GO:0051168	nuclear export	The directed movement of substances out of the nucleus.
	GO:0051170	nuclear import	The directed movement of substances into the nucleus.
	GO:0032212	positive regulation of telomere maintenance via telomerase	Any process that activates or increases the frequency, rate or extent of the addition of telomeric repeats by telomerase.
	GO:0006810	transport	The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
	GO:0016032	viral process	A multi-organism process in which a virus is a participant. The other participant is the host. Includes infection of a host cell, replication of the viral genome, and assembly of progeny virus particles. In some cases the viral genetic material may integrate into the host genome and only subsequently, under particular circumstances, 'complete' its life cycle.
cellular component
	GO:0071013	catalytic step 2 spliceosome	A spliceosomal complex that contains three snRNPs, including U5, bound to a splicing intermediate in which the first catalytic cleavage of the 5' splice site has occurred. The precise subunit composition differs significantly from that of the catalytic step 1, or activated, spliceosome, and includes many proteins in addition to those found in the associated snRNPs.
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0070062	extracellular exosome	A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
	GO:0030529	intracellular ribonucleoprotein complex	An intracellular macromolecular complex containing both protein and RNA molecules.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0005654	nucleoplasm	That part of the nuclear content other than the chromosomes or the nucleolus.
	GO:0005634	nucleus	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
	GO:0005681	spliceosomal complex	Any of a series of ribonucleoprotein complexes that contain snRNA(s) and small nuclear ribonucleoproteins (snRNPs), and are formed sequentially during the spliceosomal splicing of one or more substrate RNAs, and which also contain the RNA substrate(s) from the initial target RNAs of splicing, the splicing intermediate RNA(s), to the final RNA products. During cis-splicing, the initial target RNA is a single, contiguous RNA transcript, whether mRNA, snoRNA, etc., and the released products are a spliced RNA and an excised intron, generally as a lariat structure. During trans-splicing, there are two initial substrate RNAs, the spliced leader RNA and a pre-mRNA.

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (0, 0)

Sites (0, 0)

SS Bonds (1, 1)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (3, 6)

PROSITE Motifs (1, 2)

Exons (24, 48)

Sequences/Alignments

Classification and Annotation

SCOP Domains (1, 2)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (42, 48)

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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File