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(-) Description

Title :  SOLUTION NMR STRUCTURE OF HNRNP A1 RRM1 IN COMPLEX WITH 5'-UUAGGUC-3' RNA
 
Authors :  P. Barraud, F. H. -T. Allain
Date :  16 Dec 16  (Deposition) - 05 Jul 17  (Release) - 12 Jul 17  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A,B  (20x)
NMR Structure *:  A,B  (1x)
Keywords :  Rrm, Splicing, Rna (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  I. Beusch, P. Barraud, A. Moursy, A. Clery, F. H. Allain
Tandem Hnrnp A1 Rna Recognition Motifs Act In Concert To Repress The Splicing Of Survival Motor Neuron Exon 7.
Elife V. 6 2017
PubMed-ID: 28650318  |  Reference-DOI: 10.7554/ELIFE.25736

(-) Compounds

Molecule 1 - HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN A1
    ChainsA
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    GeneHNRNPA1, HNRPA1
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymHNRNP A1,HELIX-DESTABILIZING PROTEIN,SINGLE-STRAND RNA- BINDING PROTEIN,HNRNP CORE PROTEIN A1
 
Molecule 2 - RNA UUAGGUC
    ChainsB
    EngineeredYES
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SyntheticYES

 Structural Features

(-) Chains, Units

  12
NMR Structure (20x)AB
NMR Structure * (1x)AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5MPG)

(-) Sites  (0, 0)

(no "Site" information available for 5MPG)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5MPG)

(-) Cis Peptide Bonds  (1, 20)

NMR Structure
No.ModelResidues
11, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20Arg A:75 -Pro A:76

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5MPG)

(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 5MPG)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:97
                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhheeeee......hhhhhhhhhh....eeeeee...........eeeeee.hhhhhhhhhhh..eee..eeeeeee..hhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------- Transcript
                  5mpg A  1 ASKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQR 97
                                    10        20        30        40        50        60        70        80        90       

Chain B from PDB  Type:RNA  Length:7
                                      
                  5mpg B  1 UUAGGUC  7

   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5MPG)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5MPG)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5MPG)

(-) Gene Ontology  (29, 29)

NMR Structure(hide GO term definitions)

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  Cis Peptide Bonds
    Arg A:75 - Pro A:76   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ROA1_HUMAN | P096511ha1 1l3k 1pgz 1po6 1u1k 1u1l 1u1m 1u1n 1u1o 1u1p 1u1q 1u1r 1up1 2h4m 2lyv 2up1 4yoe 5mpl

(-) Related Entries Specified in the PDB File

5mpl HNRNP A1 RRM2 IN COMPLEX WITH 5'-UCAGUU-3' RNA