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2H4M
Asym. Unit
Info
Asym.Unit (245 KB)
Biol.Unit 1 (238 KB)
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(1)
Title
:
KARYOPHERIN BETA2/TRANSPORTIN-M9NLS
Authors
:
Y. M. Chook, A. E. Cansizoglu
Date
:
24 May 06 (Deposition) - 24 Oct 06 (Release) - 14 Jun 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.05
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Heat Repeat, Nuclear Import Complex, Protein Transport
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. J. Lee, A. E. Cansizoglu, T. H. Louis, Z. Zhang, Y. M. Chook
Rules For Nuclear Localization Sequence Recognition By Karyopherin Beta 2.
Cell(Cambridge, Mass. ) V. 126 543 2006
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Hetero Components
(0, 0)
Info
All Hetero Components
View:
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Label:
Sorry, no Info available
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]
Sites
(0, 0)
Info
All Sites
View:
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Label:
Sorry, no Info available
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]
SAPs(SNPs)/Variants
(2, 4)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_014455 (D26E, chain A/B, )
2: VAR_070590 (N267S, chain C/D, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_014455
D
34
E
TNPO1_HUMAN
Polymorphism
25661
A/B
D
26
E
2
UniProt
VAR_070590
N
319
S
ROA1_HUMAN
Disease (ALS20)
---
C/D
N
267
S
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: IMPORTIN_B_NT (A:33-101,B:33-101)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
IMPORTIN_B_NT
PS50166
Importin-beta N-terminal domain profile.
TNPO1_HUMAN
41-109
2
A:33-101
B:33-101
[
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Exons
(24, 48)
Info
All Exons
Exon 1.5 (A:6-35 | B:6-35)
Exon 1.6c (A:36-61 (gaps) | B:36-61 (gaps))
Exon 1.7c (A:61-111 (gaps) | B:61-111 (gaps))
Exon 1.8a (A:111-146 | B:111-146)
Exon 1.10b (A:147-191 | B:147-191 (gaps))
Exon 1.12a (A:191-218 | B:191-218)
Exon 1.13 (A:219-259 | B:219-259)
Exon 1.14 (A:260-299 | B:260-299)
Exon 1.15 (A:299-319 | B:299-319)
Exon 1.16c (A:369-376 | B:369-376)
Exon 1.17b (A:376-427 | B:376-427)
Exon 1.18a (A:427-502 | B:427-502)
Exon 1.19 (A:502-559 | B:502-559)
Exon 1.20 (A:560-588 | B:560-588)
Exon 1.21b (A:589-624 | B:589-624)
Exon 1.22a (A:625-677 | B:625-677)
Exon 1.23 (A:678-707 | B:678-707)
Exon 1.24 (A:707-740 | B:707-740)
Exon 1.25 (A:740-772 | B:740-772)
Exon 1.26 (A:772-797 | B:772-797)
Exon 1.27b (A:797-830 | B:797-830)
Exon 1.28 (A:831-855 | B:831-855)
Exon 1.29c (A:856-890 | B:856-890)
Exon 2.9a (C:267-289 | D:263-289)
View:
Select:
Label:
All Exon Boundaries
01: Boundary 1.1a/1.5
02: Boundary 1.5/1.6c
03: Boundary 1.6c/1.7c
04: Boundary 1.7c/1.8a
05: Boundary 1.8a/1.10b
06: Boundary 1.10b/1.12a
07: Boundary 1.12a/1.13
08: Boundary 1.13/1.14
09: Boundary 1.14/1.15
10: Boundary 1.15/1.16c
11: Boundary 1.16c/1.17b
12: Boundary 1.17b/1.18a
13: Boundary 1.18a/1.19
14: Boundary 1.19/1.20
15: Boundary 1.20/1.21b
16: Boundary 1.21b/1.22a
17: Boundary 1.22a/1.23
18: Boundary 1.23/1.24
19: Boundary 1.24/1.25
20: Boundary 1.25/1.26
21: Boundary 1.26/1.27b
22: Boundary 1.27b/1.28
23: Boundary 1.28/1.29c
24: Boundary 1.29c/1.30f
25: Boundary 2.8a/2.9a
26: Boundary 2.9a/2.10
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000337273
1a
ENSE00002137257
chr5:
72112139-72112579
441
TNPO1_HUMAN
1-5
5
0
-
-
1.5
ENST00000337273
5
ENSE00001678683
chr5:
72144212-72144325
114
TNPO1_HUMAN
6-43
38
2
A:6-35
B:6-35
30
30
1.6c
ENST00000337273
6c
ENSE00000752304
chr5:
72147071-72147146
76
TNPO1_HUMAN
44-69
26
2
A:36-61 (gaps)
B:36-61 (gaps)
26
26
1.7c
ENST00000337273
7c
ENSE00000534707
chr5:
72151601-72151750
150
TNPO1_HUMAN
69-119
51
2
A:61-111 (gaps)
B:61-111 (gaps)
51
51
1.8a
ENST00000337273
8a
ENSE00000752327
chr5:
72157635-72157741
107
TNPO1_HUMAN
119-154
36
2
A:111-146
B:111-146
36
36
1.10b
ENST00000337273
10b
ENSE00000752440
chr5:
72161423-72161556
134
TNPO1_HUMAN
155-199
45
2
A:147-191
B:147-191 (gaps)
45
45
1.12a
ENST00000337273
12a
ENSE00001659385
chr5:
72168466-72168547
82
TNPO1_HUMAN
199-226
28
2
A:191-218
B:191-218
28
28
1.13
ENST00000337273
13
ENSE00001619386
chr5:
72171442-72171564
123
TNPO1_HUMAN
227-267
41
2
A:219-259
B:219-259
41
41
1.14
ENST00000337273
14
ENSE00001752263
chr5:
72173055-72173173
119
TNPO1_HUMAN
268-307
40
2
A:260-299
B:260-299
40
40
1.15
ENST00000337273
15
ENSE00001797615
chr5:
72178294-72178354
61
TNPO1_HUMAN
307-327
21
2
A:299-319
B:299-319
21
21
1.16c
ENST00000337273
16c
ENSE00001805396
chr5:
72178891-72179059
169
TNPO1_HUMAN
328-384
57
2
A:369-376
B:369-376
8
8
1.17b
ENST00000337273
17b
ENSE00001752488
chr5:
72182897-72183049
153
TNPO1_HUMAN
384-435
52
2
A:376-427
B:376-427
52
52
1.18a
ENST00000337273
18a
ENSE00001670694
chr5:
72183905-72184130
226
TNPO1_HUMAN
435-510
76
2
A:427-502
B:427-502
76
76
1.19
ENST00000337273
19
ENSE00001603550
chr5:
72185613-72185784
172
TNPO1_HUMAN
510-567
58
2
A:502-559
B:502-559
58
58
1.20
ENST00000337273
20
ENSE00001611908
chr5:
72187637-72187723
87
TNPO1_HUMAN
568-596
29
2
A:560-588
B:560-588
29
29
1.21b
ENST00000337273
21b
ENSE00001762530
chr5:
72188966-72189073
108
TNPO1_HUMAN
597-632
36
2
A:589-624
B:589-624
36
36
1.22a
ENST00000337273
22a
ENSE00001717735
chr5:
72189204-72189362
159
TNPO1_HUMAN
633-685
53
2
A:625-677
B:625-677
53
53
1.23
ENST00000337273
23
ENSE00001743796
chr5:
72189443-72189530
88
TNPO1_HUMAN
686-715
30
2
A:678-707
B:678-707
30
30
1.24
ENST00000337273
24
ENSE00001660046
chr5:
72192285-72192383
99
TNPO1_HUMAN
715-748
34
2
A:707-740
B:707-740
34
34
1.25
ENST00000337273
25
ENSE00001687148
chr5:
72192883-72192978
96
TNPO1_HUMAN
748-780
33
2
A:740-772
B:740-772
33
33
1.26
ENST00000337273
26
ENSE00001743811
chr5:
72195833-72195908
76
TNPO1_HUMAN
780-805
26
2
A:772-797
B:772-797
26
26
1.27b
ENST00000337273
27b
ENSE00001600924
chr5:
72196801-72196900
100
TNPO1_HUMAN
805-838
34
2
A:797-830
B:797-830
34
34
1.28
ENST00000337273
28
ENSE00001730129
chr5:
72199536-72199610
75
TNPO1_HUMAN
839-863
25
2
A:831-855
B:831-855
25
25
1.29c
ENST00000337273
29c
ENSE00001718138
chr5:
72201130-72201272
143
TNPO1_HUMAN
864-898
35
2
A:856-890
B:856-890
35
35
1.30f
ENST00000337273
30f
ENSE00001925200
chr5:
72204536-72212560
8025
TNPO1_HUMAN
-
0
0
-
-
2.1a
ENST00000340913
1a
ENSE00001482313
chr12:
54674488-54674606
119
ROA1_HUMAN
1-5
5
0
-
-
2.2
ENST00000340913
2
ENSE00000920024
chr12:
54675170-54675286
117
ROA1_HUMAN
6-44
39
0
-
-
2.3
ENST00000340913
3
ENSE00000920026
chr12:
54675579-54675725
147
ROA1_HUMAN
45-93
49
0
-
-
2.4
ENST00000340913
4
ENSE00000920027
chr12:
54675874-54676084
211
ROA1_HUMAN
94-164
71
0
-
-
2.5
ENST00000340913
5
ENSE00000920030
chr12:
54676178-54676270
93
ROA1_HUMAN
164-195
32
0
-
-
2.6
ENST00000340913
6
ENSE00000920032
chr12:
54676357-54676449
93
ROA1_HUMAN
195-226
32
0
-
-
2.7
ENST00000340913
7
ENSE00000920033
chr12:
54676584-54676658
75
ROA1_HUMAN
226-251
26
0
-
-
2.8a
ENST00000340913
8a
ENSE00001690592
chr12:
54676863-54677018
156
ROA1_HUMAN
251-303
53
0
-
-
2.9a
ENST00000340913
9a
ENSE00001532273
chr12:
54677596-54677751
156
ROA1_HUMAN
303-355
53
2
C:267-289
D:263-289
23
27
2.10
ENST00000340913
10
ENSE00001378946
chr12:
54678042-54678101
60
ROA1_HUMAN
355-372
18
0
-
-
2.11
ENST00000340913
11
ENSE00001532276
chr12:
54678333-54679028
696
ROA1_HUMAN
-
0
0
-
-
[
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2h4ma_ (A:)
1b: SCOP_d2h4mb_ (B:)
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Class
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All alpha proteins
(14657)
Fold
:
alpha-alpha superhelix
(690)
Superfamily
:
ARM repeat
(317)
Family
:
Armadillo repeat
(77)
Protein domain
:
automated matches
(16)
Human (Homo sapiens) [TaxId: 9606]
(9)
1a
d2h4ma_
A:
1b
d2h4mb_
B:
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