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(-) Description

Title :  HNRNP A1 RRM2 IN COMPLEX WITH 5'-UCAGUU-3' RNA
 
Authors :  P. Barraud, F. H. -T. Allain
Date :  16 Dec 16  (Deposition) - 05 Jul 17  (Release) - 05 Jul 17  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A,B  (20x)
NMR Structure *:  A,B  (1x)
Keywords :  Rrm, Splicing, Rna, Hnrnp (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  I. Beusch, P. Barraud, A. Moursy, A. Clery, F. H. Allain
Tandem Hnrnp A1 Rna Recognition Motifs Act In Concert To Repress The Splicing Of Survival Motor Neuron Exon 7.
Elife V. 6 2017
PubMed-ID: 28650318  |  Reference-DOI: 10.7554/ELIFE.25736

(-) Compounds

Molecule 1 - HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN A1
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: HNRNPA1, HNRPA1
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: HNRNP A1,HELIX-DESTABILIZING PROTEIN,SINGLE-STRAND RNA- BINDING PROTEIN,HNRNP CORE PROTEIN A1
 
Molecule 2 - RNA UCAGUU
    Chains: B
    Engineered: YES
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
NMR Structure (20x): AB
NMR Structure * (1x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5MPL)

(-) Sites  (0, 0)

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(-) SS Bonds  (0, 0)

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(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:102
                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...........eeeee......hhhhhhhhhh....eeeee.............eeeee.....hhhhhh..eeee..eeeeeee..hhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------ Transcript
                 5mpl A  95 SQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQRGR 196
                                   104       114       124       134       144       154       164       174       184       194  


Chain B from PDB  Type:RNA  Length:6
                                      
                 5mpl B   1 UCAGUU   6
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (29, 29)

NMR Structure(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ROA1_HUMAN | P09651: 1ha1 1l3k 1pgz 1po6 1u1k 1u1l 1u1m 1u1n 1u1o 1u1p 1u1q 1u1r 1up1 2h4m 2lyv 2up1 4yoe 5mpg

(-) Related Entries Specified in the PDB File

5mpg HNRNP A1 RRM1 IN COMPLEX WITH RNA 5'-UUAGGUC-3' RELATED ID: 34080 RELATED DB: BMRB HNRNP A1 RRM2 IN COMPLEX WITH 5'-UCAGUU-3' RNA