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(-) Description

Title :  STAPHYLOCOAGULASE BOUND TO BOVINE THROMBIN
 
Authors :  R. Friedrich, P. Panizzi, S. Kawabata, W. Bode, P. E. Bock, P. Fuentes-P
Date :  20 Jun 05  (Deposition) - 27 Sep 05  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.50
Chains :  Asym. Unit :  A,B,D,E,F,H
Biol. Unit 1:  A,B,D  (1x)
Biol. Unit 2:  E,F,H  (1x)
Keywords :  Prothrombin Activator, Hydrolase-Hydrolase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  R. Friedrich, P. Panizzi, S. Kawabata, W. Bode, P. E. Bock, P. Fuentes-Prior
Structural Basis For Reduced Staphylocoagulase-Mediated Bovine Prothrombin Activation
J. Biol. Chem. V. 281 1188 2006
PubMed-ID: 16230338  |  Reference-DOI: 10.1074/JBC.M507957200

(-) Compounds

Molecule 1 - THROMBIN
    ChainsA, E
    EC Number3.4.21.5
    FragmentTHROMBIN LIGHT CHAIN
    Organism CommonCATTLE
    Organism ScientificBOS TAURUS
    Organism Taxid9913
    SynonymCOAGULATION FACTOR II
 
Molecule 2 - THROMBIN
    ChainsB, F
    EC Number3.4.21.5
    FragmentTHROMBIN HEAVY CHAIN
    Organism CommonCATTLE
    Organism ScientificBOS TAURUS
    Organism Taxid9913
    SynonymCOAGULATION FACTOR II
 
Molecule 3 - STAPHYLOCOAGULASE
    ChainsD, H
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    FragmentACTIVE FRAGMENT 1-329
    Organism ScientificSTAPHYLOCOCCUS AUREUS
    Organism Taxid1280

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit ABDEFH
Biological Unit 1 (1x)ABD   
Biological Unit 2 (1x)   EFH

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 5)

Asymmetric Unit (3, 5)
No.NameCountTypeFull Name
10G62Ligand/IonD-PHENYLALANYL-N-[(2S,3S)-6-{[AMINO(IMINIO)METHYL]AMINO}-1-CHLORO-2-HYDROXYHEXAN-3-YL]-L-PROLINAMIDE
2NA2Ligand/IonSODIUM ION
3NDG1Ligand/Ion2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
Biological Unit 1 (2, 2)
No.NameCountTypeFull Name
10G61Ligand/IonD-PHENYLALANYL-N-[(2S,3S)-6-{[AMINO(IMINIO)METHYL]AMINO}-1-CHLORO-2-HYDROXYHEXAN-3-YL]-L-PROLINAMIDE
2NA-1Ligand/IonSODIUM ION
3NDG1Ligand/Ion2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
10G61Ligand/IonD-PHENYLALANYL-N-[(2S,3S)-6-{[AMINO(IMINIO)METHYL]AMINO}-1-CHLORO-2-HYDROXYHEXAN-3-YL]-L-PROLINAMIDE
2NA-1Ligand/IonSODIUM ION
3NDG-1Ligand/Ion2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS B:57 , TYR B:60A , TRP B:60D , LEU B:99 , ASP B:189 , ALA B:190 , CYS B:191 , GLY B:193 , ASP B:194 , SER B:195 , SER B:214 , TRP B:215 , GLY B:216 , GLY B:219 , CYS B:220BINDING SITE FOR RESIDUE 0G6 B 500
2AC2SOFTWAREHIS F:57 , TYR F:60A , TRP F:60D , LEU F:99 , ASP F:189 , ALA F:190 , CYS F:191 , GLY F:193 , ASP F:194 , SER F:195 , SER F:214 , TRP F:215 , GLY F:216 , GLY F:219 , CYS F:220BINDING SITE FOR RESIDUE 0G6 F 600
3AC3SOFTWAREASN B:60GBINDING SITE FOR RESIDUE NDG B 700
4AC4SOFTWAREASP B:221 , ARG B:221ABINDING SITE FOR RESIDUE NA B 901
5AC5SOFTWARETYR F:184 , GLY F:188 , ASP F:221BINDING SITE FOR RESIDUE NA F 902

(-) SS Bonds  (8, 8)

Asymmetric Unit
No.Residues
1A:1 -B:122
2B:42 -B:58
3B:168 -B:182
4B:191 -B:220
5E:1 -F:122
6F:42 -F:58
7F:168 -F:182
8F:191 -F:220

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Ser B:36A-Pro B:37
2Ser F:36A-Pro F:37

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (1, 2)

Asymmetric Unit (1, 2)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_THRB_BOVIN_001 *D600NTHRB_BOVIN  ---  ---B/FD222N
   * ID not provided by source

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 1 (1, 1)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_THRB_BOVIN_001 *D600NTHRB_BOVIN  ---  ---BD222N
   * ID not provided by source

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 2 (1, 1)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_THRB_BOVIN_001 *D600NTHRB_BOVIN  ---  ---FD222N
   * ID not provided by source

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (3, 6)

Asymmetric Unit (3, 6)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1TRYPSIN_DOMPS50240 Serine proteases, trypsin domain profile.THRB_BOVIN367-621
 
  2B:16-243
F:16-243
2TRYPSIN_HISPS00134 Serine proteases, trypsin family, histidine active site.THRB_BOVIN405-410
 
  2B:53-58
F:53-58
3TRYPSIN_SERPS00135 Serine proteases, trypsin family, serine active site.THRB_BOVIN565-576
 
  2B:189-200
F:189-200
Biological Unit 1 (3, 3)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1TRYPSIN_DOMPS50240 Serine proteases, trypsin domain profile.THRB_BOVIN367-621
 
  1B:16-243
-
2TRYPSIN_HISPS00134 Serine proteases, trypsin family, histidine active site.THRB_BOVIN405-410
 
  1B:53-58
-
3TRYPSIN_SERPS00135 Serine proteases, trypsin family, serine active site.THRB_BOVIN565-576
 
  1B:189-200
-
Biological Unit 2 (3, 3)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1TRYPSIN_DOMPS50240 Serine proteases, trypsin domain profile.THRB_BOVIN367-621
 
  1-
F:16-243
2TRYPSIN_HISPS00134 Serine proteases, trypsin family, histidine active site.THRB_BOVIN405-410
 
  1-
F:53-58
3TRYPSIN_SERPS00135 Serine proteases, trypsin family, serine active site.THRB_BOVIN565-576
 
  1-
F:189-200

(-) Exons   (7, 16)

Asymmetric Unit (7, 16)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1ENSBTAT000000094061ENSBTAE00000076598chr15:77004894-77005007114THRB_BOVIN1-27270--
1.2ENSBTAT000000094062ENSBTAE00000076606chr15:77005352-77005515164THRB_BOVIN27-81550--
1.3ENSBTAT000000094063ENSBTAE00000306249chr15:77006130-7700615425THRB_BOVIN82-9090--
1.4ENSBTAT000000094064ENSBTAE00000076608chr15:77006384-7700643451THRB_BOVIN90-107180--
1.5ENSBTAT000000094065ENSBTAE00000076609chr15:77007812-77007917106THRB_BOVIN107-142360--
1.6ENSBTAT000000094066ENSBTAE00000076610chr15:77008015-77008151137THRB_BOVIN142-188470--
1.7ENSBTAT000000094067ENSBTAE00000076611chr15:77009362-77009676315THRB_BOVIN188-2931060--
1.8ENSBTAT000000094068ENSBTAE00000076614chr15:77009972-77010106135THRB_BOVIN293-338462A:1M-1A
-
E:1M-1A
-
13
-
13
-
1.9ENSBTAT000000094069ENSBTAE00000076615chr15:77010182-77010308127THRB_BOVIN338-380434A:1A-15
B:16-29
E:1A-15
F:16-29
29
14
29
14
1.10ENSBTAT0000000940610ENSBTAE00000076616chr15:77011290-77011457168THRB_BOVIN380-436572-
B:29-75
-
F:29-75
-
57
-
57
1.11ENSBTAT0000000940611ENSBTAE00000076617chr15:77011956-77012129174THRB_BOVIN436-494592-
B:75-129B
-
F:75-129B
-
59
-
59
1.12ENSBTAT0000000940612ENSBTAE00000306240chr15:77012378-77012559182THRB_BOVIN494-555622-
B:129B-184A
-
F:129B-184A
-
62
-
62
1.13ENSBTAT0000000940613ENSBTAE00000076620chr15:77018853-7701892371THRB_BOVIN555-578242-
B:184A-202
-
F:184A-202
-
24
-
24
1.14ENSBTAT0000000940614ENSBTAE00000076621chr15:77019058-77019320263THRB_BOVIN579-625472-
B:203-247 (gaps)
-
F:203-247 (gaps)
-
48
-
48

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:41
 aligned with THRB_BOVIN | P00735 from UniProtKB/Swiss-Prot  Length:625

    Alignment length:41
                                   335       345       355       365 
          THRB_BOVIN    326 FFNEKTFGAGEADCGLRPLFEKKQVQDQTEKELFESYIEGR  366
               SCOP domains ----------------------------------------- SCOP domains
               CATH domains 2a1dA00 A:1M-15                           CATH domains
               Pfam domains ----------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhh...........hhhhh.....hhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------- SAPs(SNPs)
                PROSITE (1) ----------------------------------------- PROSITE (1)
                PROSITE (2) ----------------------------------------- PROSITE (2)
           Transcript 1 (1) Exon 1.8     ---------------------------- Transcript 1 (1)
           Transcript 1 (2) ------------Exon 1.9  PDB: A:1A-15        Transcript 1 (2)
                2a1d A   1M FFNEKTFGAGEADCGLRPLFEKKQVQDQTEKELFESYIEGR   15
                            ||||||||1D|||      7       14C|||||||14M 
                           1M|||||||1D|||            14A||||||14J||| 
                            1L|||||||1C||             14B||||||14K|| 
                             1K|||||| 1B|              14C||||||14L| 
                              1J|||||  1A               14D||||| 14M 
                               1I||||                    14E||||     
                                1H|||                     14F|||     
                                 1G||                      14G||     
                                  1F|                       14H|     
                                   1E                        14I     

Chain B from PDB  Type:PROTEIN  Length:259
 aligned with THRB_BOVIN | P00735 from UniProtKB/Swiss-Prot  Length:625

    Alignment length:259
                                   376       386       396       406       416       426       436       446       456       466       476       486       496       506       516       526       536       546       556       566       576       586       596       606       616         
          THRB_BOVIN    367 IVEGQDAEVGLSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTVDDLLVRIGKHSRTRYERKVEKISMLDKIYIHPRYNWKENLDRDIALLKLKRPIELSDYIHPVCLPDKQTAAKLLHAGFKGRVTGWGNRRETWTTSVAEVQPSVLQVVNLPLVERPVCKASTRIRITDNMFCAGYKPGEGKRGDACEGDSGGPFVMKSPYNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVIDRLGS  625
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2a1dB01     2a1dB02 B:28-120,B:233-247 Trypsin-like serine proteases                                                 2a1dB01 B:16-27,B:121-232 Trypsin-like serine proteases                                                                        2a1dB02         CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............eeeeee....eeeeeeee....eeeehhhh.eehhhhee.....eeeee.............eeeeeeeeee..............eeeee..................hhhhhhh......eeee....................eee.....hhhhhhhh........eeee...................eeeeee....eeeeeeeeee..........eeeeehhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------N------------------------- SAPs(SNPs)
                PROSITE (1) TRYPSIN_DOM  PDB: B:16-243 UniProt: 367-621                                                                                                                                                                                                                    ---- PROSITE (1)
                PROSITE (2) --------------------------------------TRYPSI----------------------------------------------------------------------------------------------------------------------------------------------------------TRYPSIN_SER ------------------------------------------------- PROSITE (2)
           Transcript 1 (1) -------------Exon 1.10  PDB: B:29-75 UniProt: 380-436                 ---------------------------------------------------------Exon 1.12  PDB: B:129B-184A UniProt: 494-555                  -----------------------Exon 1.14  PDB: B:203-247 (gaps)                Transcript 1 (1)
           Transcript 1 (2) Exon 1.9      -------------------------------------------------------Exon 1.11  PDB: B:75-129B UniProt: 436-494                 ------------------------------------------------------------Exon 1.13               ----------------------------------------------- Transcript 1 (2)
                2a1d B   16 IVEGQDAEVGLSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTVDDLLVRIGKHSRTRYERKVEKISMLDKIYIHPRYNWKENLDRDIALLKLKRPIELSDYIHPVCLPDKQTAAKLLHAGFKGRVTGWGNRRETWTTSVAEVQPSVLQVVNLPLVERPVCKASTRIRITDNMFCAGYKPGEGKRGDACEGDSGGPFVMKSPYNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVIDRLGS  247
                                    25        35 |      44        54      |60D|||||   65        75  |     84        94   |   103       113       123      |130       140      149A||||   155       165       175       184  |||| 190       200    || 208       219  |    228       238         
                                               36A                      60A||||||||               77A                  97A                             129A||                 149A||||                               184A   ||||               204A|          217|  |                          
                                                                         60B|||||||                                                                     129B|                  149B|||                                   186A|||                204B           219  |                          
                                                                          60C||||||                                                                      129C                   149C||                                    186B||                                 221A                          
                                                                           60D|||||                                                                                              149D|                                     186C|                                                               
                                                                            60E||||                                                                                               149E                                      186D                                                               
                                                                             60F|||                                                                                                                                                                                                            
                                                                              60G||                                                                                                                                                                                                            
                                                                               60H|                                                                                                                                                                                                            
                                                                                60I                                                                                                                                                                                                            

Chain D from PDB  Type:PROTEIN  Length:282
 aligned with STC2_STAAU | P17855 from UniProtKB/Swiss-Prot  Length:715

    Alignment length:283
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305   
          STC2_STAAU     26 AIVTKDYSKESRVNENSKYGTLISDWYLKGRLTSLESQFINALDILETYHYGEKEYKDAKDKLMTRILGEDQYLLERKKVQYEEYKKLYQKYKEENPTSKGLKLKTFDQYTIEDLTMREYNELTESLKSAVKDFEKDVEKIENQHHDLKPFTDEMEEKATSRVDDLANKAYSVYFAFVRDTQHKTEALELKAKVDLVLGDEDKPHRISNERIEKEMIKDLESIIEDFFIETGLNKPGNITSYDSSKHHYKNHSEGFEALVKETREAVANADESWKTKTVKKYG  308
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......................hhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......-..............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhh...................hhhhhhhhhhhhhhhhhhh..hhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                2a1d D    0 MIVTKDYSKESRVNENSKYGTLISDWYLKGRLTSLESQFINALDILETYHYGEKEYKDAKDKLMTRILGEDQYLLERKKVQYEEYKKLYQKYKEENPTSK-LKLKTFDQYTIEDLTMREYNELTESLKSAVKDFEKDVEKIENQHHDLKPFTDEMEEKATSRVDDLANKAYSVYFAFVRDTQHKTEALELKAKVDLVLGDEDKPHRISNERIEKEMIKDLESIIEDFFIETGLNKPGNITSYDSSKHHYKNHSEGFEALVKETREAVANADESWKTKTVKKYG  281
                                     9        19        29        39        49        59        69        79        89        99 |     108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278   
                                                                                                                              99 |                                                                                                                                                                                     
                                                                                                                               100                                                                                                                                                                                     

Chain E from PDB  Type:PROTEIN  Length:41
 aligned with THRB_BOVIN | P00735 from UniProtKB/Swiss-Prot  Length:625

    Alignment length:41
                                   335       345       355       365 
          THRB_BOVIN    326 FFNEKTFGAGEADCGLRPLFEKKQVQDQTEKELFESYIEGR  366
               SCOP domains ----------------------------------------- SCOP domains
               CATH domains 2a1dE00 E:1M-15                           CATH domains
               Pfam domains ----------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhh...........hhhhh.....hhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------- SAPs(SNPs)
                PROSITE (1) ----------------------------------------- PROSITE (1)
                PROSITE (2) ----------------------------------------- PROSITE (2)
           Transcript 1 (1) Exon 1.8     ---------------------------- Transcript 1 (1)
           Transcript 1 (2) ------------Exon 1.9  PDB: E:1A-15        Transcript 1 (2)
                2a1d E   1M FFNEKTFGAGEADCGLRPLFEKKQVQDQTEKELFESYIEGR   15
                            ||||||||1D|||      7       14C|||||||14M 
                           1M|||||||1D|||            14A||||||14J||| 
                            1L|||||||1C||             14B||||||14K|| 
                             1K|||||| 1B|              14C||||||14L| 
                              1J|||||  1A               14D||||| 14M 
                               1I||||                    14E||||     
                                1H|||                     14F|||     
                                 1G||                      14G||     
                                  1F|                       14H|     
                                   1E                        14I     

Chain F from PDB  Type:PROTEIN  Length:259
 aligned with THRB_BOVIN | P00735 from UniProtKB/Swiss-Prot  Length:625

    Alignment length:259
                                   376       386       396       406       416       426       436       446       456       466       476       486       496       506       516       526       536       546       556       566       576       586       596       606       616         
          THRB_BOVIN    367 IVEGQDAEVGLSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTVDDLLVRIGKHSRTRYERKVEKISMLDKIYIHPRYNWKENLDRDIALLKLKRPIELSDYIHPVCLPDKQTAAKLLHAGFKGRVTGWGNRRETWTTSVAEVQPSVLQVVNLPLVERPVCKASTRIRITDNMFCAGYKPGEGKRGDACEGDSGGPFVMKSPYNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVIDRLGS  625
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2a1dF01     2a1dF02 F:28-120,F:233-247 Trypsin-like serine proteases                                                 2a1dF01 F:16-27,F:121-232 Trypsin-like serine proteases                                                                        2a1dF02         CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............eeeeee....eeeeeeee....eeeehhhh.eehhhhee.....eeeee.............eeeeeeeeee..............eeeee..................hhhhhhh......eeee....................eee.....hhhhhhhh........eeee...................eeeeee....eeeeeeeeee..........eeeeehhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------N------------------------- SAPs(SNPs)
                PROSITE (1) TRYPSIN_DOM  PDB: F:16-243 UniProt: 367-621                                                                                                                                                                                                                    ---- PROSITE (1)
                PROSITE (2) --------------------------------------TRYPSI----------------------------------------------------------------------------------------------------------------------------------------------------------TRYPSIN_SER ------------------------------------------------- PROSITE (2)
           Transcript 1 (1) -------------Exon 1.10  PDB: F:29-75 UniProt: 380-436                 ---------------------------------------------------------Exon 1.12  PDB: F:129B-184A UniProt: 494-555                  -----------------------Exon 1.14  PDB: F:203-247 (gaps)                Transcript 1 (1)
           Transcript 1 (2) Exon 1.9      -------------------------------------------------------Exon 1.11  PDB: F:75-129B UniProt: 436-494                 ------------------------------------------------------------Exon 1.13               ----------------------------------------------- Transcript 1 (2)
                2a1d F   16 IVEGQDAEVGLSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTVDDLLVRIGKHSRTRYERKVEKISMLDKIYIHPRYNWKENLDRDIALLKLKRPIELSDYIHPVCLPDKQTAAKLLHAGFKGRVTGWGNRRETWTTSVAEVQPSVLQVVNLPLVERPVCKASTRIRITDNMFCAGYKPGEGKRGDACEGDSGGPFVMKSPYNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVIDRLGS  247
                                    25        35 |      44        54      |60D|||||   65        75  |     84        94   |   103       113       123      |130       140      149A||||   155       165       175       184  |||| 190       200    || 208       219  |    228       238         
                                               36A                      60A||||||||               77A                  97A                             129A||                 149A||||                               184A   ||||               204A|          217|  |                          
                                                                         60B|||||||                                                                     129B|                  149B|||                                   186A|||                204B           219  |                          
                                                                          60C||||||                                                                      129C                   149C||                                    186B||                                 221A                          
                                                                           60D|||||                                                                                              149D|                                     186C|                                                               
                                                                            60E||||                                                                                               149E                                      186D                                                               
                                                                             60F|||                                                                                                                                                                                                            
                                                                              60G||                                                                                                                                                                                                            
                                                                               60H|                                                                                                                                                                                                            
                                                                                60I                                                                                                                                                                                                            

Chain H from PDB  Type:PROTEIN  Length:282
 aligned with STC2_STAAU | P17855 from UniProtKB/Swiss-Prot  Length:715

    Alignment length:283
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305   
          STC2_STAAU     26 AIVTKDYSKESRVNENSKYGTLISDWYLKGRLTSLESQFINALDILETYHYGEKEYKDAKDKLMTRILGEDQYLLERKKVQYEEYKKLYQKYKEENPTSKGLKLKTFDQYTIEDLTMREYNELTESLKSAVKDFEKDVEKIENQHHDLKPFTDEMEEKATSRVDDLANKAYSVYFAFVRDTQHKTEALELKAKVDLVLGDEDKPHRISNERIEKEMIKDLESIIEDFFIETGLNKPGNITSYDSSKHHYKNHSEGFEALVKETREAVANADESWKTKTVKKYG  308
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......................hhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......-..............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhh...................hhhhhhhhhhhhhhhhhhh..hhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                2a1d H    0 MIVTKDYSKESRVNENSKYGTLISDWYLKGRLTSLESQFINALDILETYHYGEKEYKDAKDKLMTRILGEDQYLLERKKVQYEEYKKLYQKYKEENPTSK-LKLKTFDQYTIEDLTMREYNELTESLKSAVKDFEKDVEKIENQHHDLKPFTDEMEEKATSRVDDLANKAYSVYFAFVRDTQHKTEALELKAKVDLVLGDEDKPHRISNERIEKEMIKDLESIIEDFFIETGLNKPGNITSYDSSKHHYKNHSEGFEALVKETREAVANADESWKTKTVKKYG  281
                                     9        19        29        39        49        59        69        79        89        99 |     108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278   
                                                                                                                              99 |                                                                                                                                                                                     
                                                                                                                               100                                                                                                                                                                                     

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2A1D)

(-) CATH Domains  (2, 6)

Asymmetric Unit
(-)
Class: Mainly Beta (13760)
2a2a1dB02B:28-120,B:233-247
2b2a1dF02F:28-120,F:233-247
2c2a1dB01B:16-27,B:121-232
2d2a1dF01F:16-27,F:121-232

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2A1D)

(-) Gene Ontology  (39, 39)

Asymmetric Unit(hide GO term definitions)
Chain A,B,E,F   (THRB_BOVIN | P00735)
molecular function
    GO:0005509    calcium ion binding    Interacting selectively and non-covalently with calcium ions (Ca2+).
    GO:0070051    fibrinogen binding    Interacting selectively and non-covalently with fibrinogen, a highly soluble hexameric glycoprotein complex that is found in blood plasma and is converted to fibrin by thrombin in the coagulation cascade.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0008233    peptidase activity    Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0005102    receptor binding    Interacting selectively and non-covalently with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function.
    GO:0004252    serine-type endopeptidase activity    Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
    GO:0008236    serine-type peptidase activity    Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
    GO:0070053    thrombospondin receptor activity    Combining with thrombospondin and transmitting the signal to initiate a change in cell activity.
biological process
    GO:0006953    acute-phase response    An acute inflammatory response that involves non-antibody proteins whose concentrations in the plasma increase in response to infection or injury of homeothermic animals.
    GO:0007596    blood coagulation    The sequential process in which the multiple coagulation factors of the blood interact, ultimately resulting in the formation of an insoluble fibrin clot; it may be divided into three stages: stage 1, the formation of intrinsic and extrinsic prothrombin converting principle; stage 2, the formation of thrombin; stage 3, the formation of stable fibrin polymers.
    GO:0007166    cell surface receptor signaling pathway    A series of molecular signals initiated by activation of a receptor on the surface of a cell. The pathway begins with binding of an extracellular ligand to a cell surface receptor, or for receptors that signal in the absence of a ligand, by ligand-withdrawal or the activity of a constitutively active receptor. The pathway ends with regulation of a downstream cellular process, e.g. transcription.
    GO:0042730    fibrinolysis    A process that solubilizes fibrin in the bloodstream of a multicellular organism, chiefly by the proteolytic action of plasmin.
    GO:0007599    hemostasis    The stopping of bleeding (loss of body fluid) or the arrest of the circulation to an organ or part.
    GO:0048712    negative regulation of astrocyte differentiation    Any process that stops, prevents, or reduces the frequency, rate or extent of astrocyte differentiation.
    GO:0045861    negative regulation of proteolysis    Any process that stops, prevents, or reduces the frequency, rate or extent of the hydrolysis of a peptide bond or bonds within a protein.
    GO:0030168    platelet activation    A series of progressive, overlapping events triggered by exposure of the platelets to subendothelial tissue. These events include shape change, adhesiveness, aggregation, and release reactions. When carried through to completion, these events lead to the formation of a stable hemostatic plug.
    GO:0030194    positive regulation of blood coagulation    Any process that activates or increases the frequency, rate or extent of blood coagulation.
    GO:0030307    positive regulation of cell growth    Any process that activates or increases the frequency, rate, extent or direction of cell growth.
    GO:0008284    positive regulation of cell proliferation    Any process that activates or increases the rate or extent of cell proliferation.
    GO:0032967    positive regulation of collagen biosynthetic process    Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of collagen, any of a group of fibrous proteins of very high tensile strength that form the main component of connective tissue in animals.
    GO:0014068    positive regulation of phosphatidylinositol 3-kinase signaling    Any process that activates or increases the frequency, rate or extent of signal transduction mediated by the phosphatidylinositol 3-kinase cascade.
    GO:1900738    positive regulation of phospholipase C-activating G-protein coupled receptor signaling pathway    Any process that activates or increases the frequency, rate or extent of phospholipase C-activating G-protein coupled receptor signaling pathway.
    GO:0001934    positive regulation of protein phosphorylation    Any process that activates or increases the frequency, rate or extent of addition of phosphate groups to amino acids within a protein.
    GO:2000379    positive regulation of reactive oxygen species metabolic process    Any process that activates or increases the frequency, rate or extent of reactive oxygen species metabolic process.
    GO:0051281    positive regulation of release of sequestered calcium ion into cytosol    Any process that activates or increases the frequency, rate or extent of the release into the cytosolic compartment of calcium ions sequestered in the endoplasmic reticulum or mitochondria.
    GO:0051258    protein polymerization    The process of creating protein polymers, compounds composed of a large number of component monomers; polymeric proteins may be made up of different or identical monomers. Polymerization occurs by the addition of extra monomers to an existing poly- or oligomeric protein.
    GO:0006508    proteolysis    The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
    GO:0008360    regulation of cell shape    Any process that modulates the surface configuration of a cell.
    GO:0051480    regulation of cytosolic calcium ion concentration    Any process involved in the maintenance of an internal steady state of calcium ions within the cytosol of a cell or between the cytosol and its surroundings.
    GO:0010468    regulation of gene expression    Any process that modulates the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA or circRNA (for protein-coding genes) and the translation of that mRNA or circRNA into protein. Protein maturation is included when required to form an active form of a product from an inactive precursor form.
    GO:0009611    response to wounding    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to the organism.
cellular component
    GO:0072562    blood microparticle    A phospholipid microvesicle that is derived from any of several cell types, such as platelets, blood cells, endothelial cells, or others, and contains membrane receptors as well as other proteins characteristic of the parental cell. Microparticles are heterogeneous in size, and are characterized as microvesicles free of nucleic acids.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
    GO:0005615    extracellular space    That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid.

Chain D,H   (STC2_STAAU | P17855)
molecular function
    GO:0016504    peptidase activator activity    Binds to and increases the activity of a peptidase, any enzyme that catalyzes the hydrolysis peptide bonds.
biological process
    GO:0010952    positive regulation of peptidase activity    Any process that increases the frequency, rate or extent of peptidase activity, the hydrolysis of peptide bonds within proteins.

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  THRB_BOVIN | P00735
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        THRB_BOVIN | P007351a0h 1avg 1bbr 1etr 1ets 1ett 1hrt 1id5 1mkw 1mkx 1nl1 1nl2 1tbq 1tbr 1toc 1ucy 1uvt 1uvu 1vit 1ycp 2hpp 2ody 2pf1 2pf2 2spt 3pma 3pmb

(-) Related Entries Specified in the PDB File

1nu7 STAPHYLOCOAGULASE BOUND TO HUMAN THROMBIN
1nu9 STAPHYLOCOAGULASE BOUND TO HUMAN PRETHROMBIN-2