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2A1D
Biol. Unit 2
Info
Asym.Unit (187 KB)
Biol.Unit 1 (92 KB)
Biol.Unit 2 (92 KB)
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(1)
Title
:
STAPHYLOCOAGULASE BOUND TO BOVINE THROMBIN
Authors
:
R. Friedrich, P. Panizzi, S. Kawabata, W. Bode, P. E. Bock, P. Fuentes-P
Date
:
20 Jun 05 (Deposition) - 27 Sep 05 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.50
Chains
:
Asym. Unit : A,B,D,E,F,H
Biol. Unit 1: A,B,D (1x)
Biol. Unit 2: E,F,H (1x)
Keywords
:
Prothrombin Activator, Hydrolase-Hydrolase Inhibitor Complex
(Keyword Search:
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Reference
:
R. Friedrich, P. Panizzi, S. Kawabata, W. Bode, P. E. Bock, P. Fuentes-Prior
Structural Basis For Reduced Staphylocoagulase-Mediated Bovine Prothrombin Activation
J. Biol. Chem. V. 281 1188 2006
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: D-PHENYLALANYL-N-[(2S,3S)-6-{[AMIN... (0G6a)
1b: D-PHENYLALANYL-N-[(2S,3S)-6-{[AMIN... (0G6b)
2a: SODIUM ION (NAa)
2b: SODIUM ION (NAb)
3a: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGa)
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No.
Name
Count
Type
Full Name
1
0G6
1
Ligand/Ion
D-PHENYLALANYL-N-[(2S,3S)-6-{[AMINO(IMINIO)METHYL]AMINO}-1-CHLORO-2-HYDROXYHEXAN-3-YL]-L-PROLINAMIDE
2
NA
-1
Ligand/Ion
SODIUM ION
3
NDG
-1
Ligand/Ion
2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
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Sites
(2, 2)
Info
All Sites
1: AC2 (SOFTWARE)
2: AC5 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC2
SOFTWARE
HIS F:57 , TYR F:60A , TRP F:60D , LEU F:99 , ASP F:189 , ALA F:190 , CYS F:191 , GLY F:193 , ASP F:194 , SER F:195 , SER F:214 , TRP F:215 , GLY F:216 , GLY F:219 , CYS F:220
BINDING SITE FOR RESIDUE 0G6 F 600
2
AC5
SOFTWARE
TYR F:184 , GLY F:188 , ASP F:221
BINDING SITE FOR RESIDUE NA F 902
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_THRB_BOVIN_001 (D222N, chain F, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_THRB_BOVIN_001
*
D
600
N
THRB_BOVIN
---
---
F
D
222
N
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: TRYPSIN_DOM (F:16-243)
2: TRYPSIN_HIS (F:53-58)
3: TRYPSIN_SER (F:189-200)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TRYPSIN_DOM
PS50240
Serine proteases, trypsin domain profile.
THRB_BOVIN
367-621
1
-
F:16-243
2
TRYPSIN_HIS
PS00134
Serine proteases, trypsin family, histidine active site.
THRB_BOVIN
405-410
1
-
F:53-58
3
TRYPSIN_SER
PS00135
Serine proteases, trypsin family, serine active site.
THRB_BOVIN
565-576
1
-
F:189-200
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Exons
(0, 0)
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SCOP Domains
(0, 0)
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CATH Domains
(2, 6)
Info
all CATH domains
1a: CATH_2a1dA00 (A:1M-15)
1b: CATH_2a1dE00 (E:1M-15)
2a: CATH_2a1dB02 (B:28-120,B:233-247)
2b: CATH_2a1dF02 (F:28-120,F:233-247)
2c: CATH_2a1dB01 (B:16-27,B:121-232)
2d: CATH_2a1dF01 (F:16-27,F:121-232)
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Class
:
Few Secondary Structures
(1120)
Architecture
:
Irregular
(1120)
Topology
:
Epsilon-Thrombin; Chain L
(37)
Homologous Superfamily
:
Epsilon-Thrombin, subunit L
(37)
Cattle (Bos taurus)
(17)
1a
2a1dA00
A:1M-15
1b
2a1dE00
E:1M-15
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Thrombin, subunit H
(1535)
Homologous Superfamily
:
Trypsin-like serine proteases
(1488)
Cattle (Bos taurus)
(308)
2a
2a1dB02
B:28-120,B:233-247
2b
2a1dF02
F:28-120,F:233-247
2c
2a1dB01
B:16-27,B:121-232
2d
2a1dF01
F:16-27,F:121-232
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Pfam Domains
(0, 0)
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all PFAM domains
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Asymmetric Unit 1
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Asym.Unit (187 KB)
Header - Asym.Unit
Biol.Unit 1 (92 KB)
Header - Biol.Unit 1
Biol.Unit 2 (92 KB)
Header - Biol.Unit 2
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