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(-) Description

Title :  THE X-RAY CRYSTAL STRUCTURE OF PPACK-MEIZOTHROMBIN DESF1: KRINGLE/THROMBIN AND CARBOHYDRATE/KRINGLE/THROMBIN INTERACTIONS AND LOCATION OF THE LINKER CHAIN
 
Authors :  P. D. Martin, M. G. Malkowski, J. Box, C. T. Esmon, B. F. P. Edwards
Date :  30 Nov 97  (Deposition) - 17 Jun 98  (Release) - 16 Nov 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.20
Chains :  Asym./Biol. Unit :  A,B,D,E
Keywords :  Serine Protease, Coagulation, Thrombin, Prothrombin, Meizothrombin, Hydrolase-Hydrolase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  P. D. Martin, M. G. Malkowski, J. Box, C. T. Esmon, B. F. Edwards
New Insights Into The Regulation Of The Blood Clotting Cascade Derived From The X-Ray Crystal Structure Of Bovine Meizothrombin Des F1 In Complex With Ppack.
Structure V. 5 1681 1997
PubMed-ID: 9438869  |  Reference-DOI: 10.1016/S0969-2126(97)00314-6

(-) Compounds

Molecule 1 - MEIZOTHROMBIN
    ChainsA, D
    EC Number3.4.21.5
    FragmentF2/THROMBIN DOMAIN
    OrganBLOOD
    Organism CommonCATTLE
    Organism ScientificBOS TAURUS
    Organism Taxid9913
    SynonymDESF1
    TissueBLOOD PLASMA
 
Molecule 2 - MEIZOTHROMBIN
    ChainsB, E
    EC Number3.4.21.5
    FragmentF2/THROMBIN DOMAIN
    OrganBLOOD
    Organism CommonCATTLE
    Organism ScientificBOS TAURUS
    Organism Taxid9913
    SynonymDESF1
    TissueBLOOD PLASMA

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit ABDE

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 6)

Asymmetric/Biological Unit (2, 6)
No.NameCountTypeFull Name
10G62Ligand/IonD-PHENYLALANYL-N-[(2S,3S)-6-{[AMINO(IMINIO)METHYL]AMINO}-1-CHLORO-2-HYDROXYHEXAN-3-YL]-L-PROLINAMIDE
2NAG4Ligand/IonN-ACETYL-D-GLUCOSAMINE

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS B:363 , ASP B:519 , ALA B:520 , CYS B:521 , GLU B:522 , GLY B:523 , SER B:525 , SER B:546 , TRP B:547 , GLY B:548 , GLY B:550BINDING SITE FOR RESIDUE 0G6 B 1
2AC2SOFTWAREHIS E:363 , TYR E:367 , GLU E:414 , LEU E:416 , ASP E:519 , ALA E:520 , GLY E:523 , SER E:525 , SER E:546 , TRP E:547 , GLY E:548 , GLY E:550BINDING SITE FOR RESIDUE 0G6 E 1
3AC3SOFTWAREGLN A:236 , ASN B:373 , THR B:375 , NAG B:585BINDING SITE FOR RESIDUE NAG B 584
4AC4SOFTWAREASP A:235 , GLN A:236 , NAG B:584BINDING SITE FOR RESIDUE NAG B 585
5AC5SOFTWAREGLN D:236 , ASN E:373 , NAG E:585BINDING SITE FOR RESIDUE NAG E 584
6AC6SOFTWAREASP D:235 , GLN D:236 , NAG E:584BINDING SITE FOR RESIDUE NAG E 585

(-) SS Bonds  (14, 14)

Asymmetric/Biological Unit
No.Residues
1A:170 -A:248
2A:191 -A:231
3A:219 -A:243
4A:293 -B:439
5B:348 -B:364
6B:493 -B:507
7B:521 -B:551
8D:170 -D:248
9D:191 -D:231
10D:219 -D:243
11D:293 -E:439
12E:348 -E:364
13E:493 -E:507
14E:521 -E:551

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Ser B:342 -Pro B:343
2Ser E:342 -Pro E:343

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (1, 2)

Asymmetric/Biological Unit (1, 2)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_THRB_BOVIN_001 *D600NTHRB_BOVIN  ---  ---B/ED554N
   * ID not provided by source

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (5, 10)

Asymmetric/Biological Unit (5, 10)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1KRINGLE_2PS50070 Kringle domain profile.THRB_BOVIN108-187
213-292
 
  2-
A:169-248
D:169-248
2KRINGLE_1PS00021 Kringle domain signature.THRB_BOVIN157-170
262-275
 
  2-
A:218-231
D:218-231
3TRYPSIN_DOMPS50240 Serine proteases, trypsin domain profile.THRB_BOVIN367-621
 
  2B:321-575
E:321-575
4TRYPSIN_HISPS00134 Serine proteases, trypsin family, histidine active site.THRB_BOVIN405-410
 
  2B:359-364
E:359-364
5TRYPSIN_SERPS00135 Serine proteases, trypsin family, serine active site.THRB_BOVIN565-576
 
  2B:519-530
E:519-530

(-) Exons   (8, 18)

Asymmetric/Biological Unit (8, 18)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1ENSBTAT000000094061ENSBTAE00000076598chr15:77004894-77005007114THRB_BOVIN1-27270--
1.2ENSBTAT000000094062ENSBTAE00000076606chr15:77005352-77005515164THRB_BOVIN27-81550--
1.3ENSBTAT000000094063ENSBTAE00000306249chr15:77006130-7700615425THRB_BOVIN82-9090--
1.4ENSBTAT000000094064ENSBTAE00000076608chr15:77006384-7700643451THRB_BOVIN90-107180--
1.5ENSBTAT000000094065ENSBTAE00000076609chr15:77007812-77007917106THRB_BOVIN107-142360--
1.6ENSBTAT000000094066ENSBTAE00000076610chr15:77008015-77008151137THRB_BOVIN142-188470--
1.7ENSBTAT000000094067ENSBTAE00000076611chr15:77009362-77009676315THRB_BOVIN188-2931062A:164-249
-
D:164-249
-
86
-
86
-
1.8ENSBTAT000000094068ENSBTAE00000076614chr15:77009972-77010106135THRB_BOVIN293-338462A:249-292
-
D:249-292
-
46
-
46
-
1.9ENSBTAT000000094069ENSBTAE00000076615chr15:77010182-77010308127THRB_BOVIN338-380434A:292-320
B:321-334
D:292-320
E:321-334
29
14
29
14
1.10ENSBTAT0000000940610ENSBTAE00000076616chr15:77011290-77011457168THRB_BOVIN380-436572-
B:334-390
-
E:334-390
-
57
-
57
1.11ENSBTAT0000000940611ENSBTAE00000076617chr15:77011956-77012129174THRB_BOVIN436-494592-
B:390-448
-
E:390-448
-
59
-
59
1.12ENSBTAT0000000940612ENSBTAE00000306240chr15:77012378-77012559182THRB_BOVIN494-555622-
B:448-509
-
E:448-509
-
62
-
62
1.13ENSBTAT0000000940613ENSBTAE00000076620chr15:77018853-7701892371THRB_BOVIN555-578242-
B:509-532
-
E:509-532
-
24
-
24
1.14ENSBTAT0000000940614ENSBTAE00000076621chr15:77019058-77019320263THRB_BOVIN579-625472-
B:533-579
-
E:533-579
-
47
-
47

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:159
 aligned with THRB_BOVIN | P00735 from UniProtKB/Swiss-Prot  Length:625

    Alignment length:159
                                   217       227       237       247       257       267       277       287       297       307       317       327       337       347       357         
          THRB_BOVIN    208 SPLLETCVPDRGREYRGRLAVTTSGSRCLAWSSEQAKALSKDQDFNPAVPLAENFCRNPDGDEEGAWCYVADQPGDFEYCDLNYCEEPVDGDLGDRLGEDPDPDAAIEGRTSEDHFQPFFNEKTFGAGEADCGLRPLFEKKQVQDQTEKELFESYIEGR  366
               SCOP domains d1a0ha1 A:164-270 Meizothrombin                                                                              d1a0h.1 A:271-320,B: Thrombin                      SCOP domains
               CATH domains 1a0hA01 A:164-252 Plasminogen Kringle 4                                                  1a0hA02 A:253-320 Epsilon-Thrombin, subunit L                          CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhh.......................hhhh...........................eee.......eee.................................................hhh................hhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -----KRINGLE_2  PDB: A:169-248 UniProt: 213-292                                      -------------------------------------------------------------------------- PROSITE (1)
                PROSITE (2) ------------------------------------------------------KRINGLE_1     ------------------------------------------------------------------------------------------- PROSITE (2)
           Transcript 1 (1) Exon 1.7  PDB: A:164-249 UniProt: 188-293 [INCOMPLETE]                                ------------------------------------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) -------------------------------------------------------------------------------------Exon 1.8  PDB: A:249-292 UniProt: 293-338     ---------------------------- Transcript 1 (2)
           Transcript 1 (3) ----------------------------------------------------------------------------------------------------------------------------------Exon 1.9  PDB: A:292-320      Transcript 1 (3)
                1a0h A  164 SPLLETCVPDRGREYRGRLAVTTHGSRCLAWSSEQAKALSKDQDFNPAVPLAENFCRNPDGDEEGAWCYVADQPGDFEYCDLNYCEEPVDGDLGDRLGEDPDPDAAIEGRTSEDHFQPFFNEKTFGAGEADCGLRPLFEKKQVQDQTEKELFESYIEGR  320
                                   173       183       193       203       213       223       233       243       253       263 ||    271       281       291       301       311         
                                                                                                                              264A|                                                        
                                                                                                                               264B                                                        

Chain B from PDB  Type:PROTEIN  Length:259
 aligned with THRB_BOVIN | P00735 from UniProtKB/Swiss-Prot  Length:625

    Alignment length:259
                                   376       386       396       406       416       426       436       446       456       466       476       486       496       506       516       526       536       546       556       566       576       586       596       606       616         
          THRB_BOVIN    367 IVEGQDAEVGLSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTVDDLLVRIGKHSRTRYERKVEKISMLDKIYIHPRYNWKENLDRDIALLKLKRPIELSDYIHPVCLPDKQTAAKLLHAGFKGRVTGWGNRRETWTTSVAEVQPSVLQVVNLPLVERPVCKASTRIRITDNMFCAGYKPGEGKRGDACEGDSGGPFVMKSPYNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVIDRLGS  625
               SCOP domains d1a0h.1 A:271-320,B: Thrombin                                                                                                                                                                                                                                       SCOP domains
               CATH domains 1a0hB01     1a0hB02 B:333-437,B:565-579 Trypsin-like serine proteases                                                1a0hB01 B:321-332,B:438-564 Trypsin-like serine proteases                                                                      1a0hB02         CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............eeeeee....eeeeeee..........hhh...hhh.....hhheeeee.............eeee..........................................hhhhhhh.....eeeee............hhhh......eeeee...hhhhhhh........eeee...................eeeee..hhh.eeeeeeeee..........eeeeehhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------N------------------------- SAPs(SNPs)
                PROSITE (1) TRYPSIN_DOM  PDB: B:321-575 UniProt: 367-621                                                                                                                                                                                                                   ---- PROSITE (1)
                PROSITE (2) --------------------------------------TRYPSI----------------------------------------------------------------------------------------------------------------------------------------------------------TRYPSIN_SER ------------------------------------------------- PROSITE (2)
           Transcript 1 (1) -------------Exon 1.10  PDB: B:334-390 UniProt: 380-436               ---------------------------------------------------------Exon 1.12  PDB: B:448-509 UniProt: 494-555                    -----------------------Exon 1.14  PDB: B:533-579 UniProt: 579-625      Transcript 1 (1)
           Transcript 1 (2) ---------------------------------------------------------------------Exon 1.11  PDB: B:390-448 UniProt: 436-494                 ------------------------------------------------------------Exon 1.13  PDB: B:509-53----------------------------------------------- Transcript 1 (2)
           Transcript 1 (3) Exon 1.9      ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (3)
                1a0h B  321 IVEGQDAEVGLSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTVDDLLVRIGKHSRTRYERKVEKISMLDKIYIHPRYNWKENLDRDIALLKLKRPIELSDYIHPVCLPDKQTAAKLLHAGFKGRVTGWGNRRETWTTSVAEVQPSVLQVVNLPLVERPVCKASTRIRITDNMFCAGYKPGEGKRGDACEGDSGGPFVMKSPYNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVIDRLGS  579
                                   330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570         

Chain D from PDB  Type:PROTEIN  Length:159
 aligned with THRB_BOVIN | P00735 from UniProtKB/Swiss-Prot  Length:625

    Alignment length:159
                                   217       227       237       247       257       267       277       287       297       307       317       327       337       347       357         
          THRB_BOVIN    208 SPLLETCVPDRGREYRGRLAVTTSGSRCLAWSSEQAKALSKDQDFNPAVPLAENFCRNPDGDEEGAWCYVADQPGDFEYCDLNYCEEPVDGDLGDRLGEDPDPDAAIEGRTSEDHFQPFFNEKTFGAGEADCGLRPLFEKKQVQDQTEKELFESYIEGR  366
               SCOP domains d1a0hd1 D:164-270 Meizothrombin                                                                              d1a0h.2 D:271-320,E: Thrombin                      SCOP domains
               CATH domains 1a0hD01 D:164-252 Plasminogen Kringle 4                                                  1a0hD02 D:253-320 Epsilon-Thrombin, subunit L                          CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhh.....................hhhhhhh..........................eee.......eee.............hhhh................................hhh.......hhh......hhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -----KRINGLE_2  PDB: D:169-248 UniProt: 213-292                                      -------------------------------------------------------------------------- PROSITE (1)
                PROSITE (2) ------------------------------------------------------KRINGLE_1     ------------------------------------------------------------------------------------------- PROSITE (2)
           Transcript 1 (1) Exon 1.7  PDB: D:164-249 UniProt: 188-293 [INCOMPLETE]                                ------------------------------------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) -------------------------------------------------------------------------------------Exon 1.8  PDB: D:249-292 UniProt: 293-338     ---------------------------- Transcript 1 (2)
           Transcript 1 (3) ----------------------------------------------------------------------------------------------------------------------------------Exon 1.9  PDB: D:292-320      Transcript 1 (3)
                1a0h D  164 SPLLETCVPDRGREYRGRLAVTTHGSRCLAWSSEQAKALSKDQDFNPAVPLAENFCRNPDGDEEGAWCYVADQPGDFEYCDLNYCEEPVDGDLGDRLGEDPDPDAAIEGRTSEDHFQPFFNEKTFGAGEADCGLRPLFEKKQVQDQTEKELFESYIEGR  320
                                   173       183       193       203       213       223       233       243       253       263 ||    271       281       291       301       311         
                                                                                                                              264A|                                                        
                                                                                                                               264B                                                        

Chain E from PDB  Type:PROTEIN  Length:259
 aligned with THRB_BOVIN | P00735 from UniProtKB/Swiss-Prot  Length:625

    Alignment length:259
                                   376       386       396       406       416       426       436       446       456       466       476       486       496       506       516       526       536       546       556       566       576       586       596       606       616         
          THRB_BOVIN    367 IVEGQDAEVGLSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTVDDLLVRIGKHSRTRYERKVEKISMLDKIYIHPRYNWKENLDRDIALLKLKRPIELSDYIHPVCLPDKQTAAKLLHAGFKGRVTGWGNRRETWTTSVAEVQPSVLQVVNLPLVERPVCKASTRIRITDNMFCAGYKPGEGKRGDACEGDSGGPFVMKSPYNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVIDRLGS  625
               SCOP domains d1a0h.2 D:271-320,E: Thrombin                                                                                                                                                                                                                                       SCOP domains
               CATH domains 1a0hE01     1a0hE02 E:333-437,E:565-579 Trypsin-like serine proteases                                                1a0hE01 E:321-332,E:438-564 Trypsin-like serine proteases                                                                      1a0hE02         CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...............eeeee....eeee........eeee.hhh...hhh.....hhheeeee.............eee.....................eeee..................hhhhhhh.....eeeee............hhhh......eeeee...hhhhhhh........eeee...................eeeee......eeeeeeeee..........eeee.hhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------N------------------------- SAPs(SNPs)
                PROSITE (1) TRYPSIN_DOM  PDB: E:321-575 UniProt: 367-621                                                                                                                                                                                                                   ---- PROSITE (1)
                PROSITE (2) --------------------------------------TRYPSI----------------------------------------------------------------------------------------------------------------------------------------------------------TRYPSIN_SER ------------------------------------------------- PROSITE (2)
           Transcript 1 (1) -------------Exon 1.10  PDB: E:334-390 UniProt: 380-436               ---------------------------------------------------------Exon 1.12  PDB: E:448-509 UniProt: 494-555                    -----------------------Exon 1.14  PDB: E:533-579 UniProt: 579-625      Transcript 1 (1)
           Transcript 1 (2) ---------------------------------------------------------------------Exon 1.11  PDB: E:390-448 UniProt: 436-494                 ------------------------------------------------------------Exon 1.13  PDB: E:509-53----------------------------------------------- Transcript 1 (2)
           Transcript 1 (3) Exon 1.9      ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (3)
                1a0h E  321 IVEGQDAEVGLSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTVDDLLVRIGKHSRTRYERKVEKISMLDKIYIHPRYNWKENLDRDIALLKLKRPIELSDYIHPVCLPDKQTAAKLLHAGFKGRVTGWGNRRETWTTSVAEVQPSVLQVVNLPLVERPVCKASTRIRITDNMFCAGYKPGEGKRGDACEGDSGGPFVMKSPYNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVIDRLGS  579
                                   330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570         

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 4)

Asymmetric/Biological Unit

(-) CATH Domains  (3, 8)

Asymmetric/Biological Unit
(-)
Class: Mainly Beta (13760)
3a1a0hB02B:333-437,B:565-579
3b1a0hE02E:333-437,E:565-579
3c1a0hB01B:321-332,B:438-564
3d1a0hE01E:321-332,E:438-564

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1A0H)

(-) Gene Ontology  (37, 37)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,D,E   (THRB_BOVIN | P00735)
molecular function
    GO:0005509    calcium ion binding    Interacting selectively and non-covalently with calcium ions (Ca2+).
    GO:0070051    fibrinogen binding    Interacting selectively and non-covalently with fibrinogen, a highly soluble hexameric glycoprotein complex that is found in blood plasma and is converted to fibrin by thrombin in the coagulation cascade.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0008233    peptidase activity    Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0005102    receptor binding    Interacting selectively and non-covalently with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function.
    GO:0004252    serine-type endopeptidase activity    Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
    GO:0008236    serine-type peptidase activity    Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
    GO:0070053    thrombospondin receptor activity    Combining with thrombospondin and transmitting the signal to initiate a change in cell activity.
biological process
    GO:0006953    acute-phase response    An acute inflammatory response that involves non-antibody proteins whose concentrations in the plasma increase in response to infection or injury of homeothermic animals.
    GO:0007596    blood coagulation    The sequential process in which the multiple coagulation factors of the blood interact, ultimately resulting in the formation of an insoluble fibrin clot; it may be divided into three stages: stage 1, the formation of intrinsic and extrinsic prothrombin converting principle; stage 2, the formation of thrombin; stage 3, the formation of stable fibrin polymers.
    GO:0007166    cell surface receptor signaling pathway    A series of molecular signals initiated by activation of a receptor on the surface of a cell. The pathway begins with binding of an extracellular ligand to a cell surface receptor, or for receptors that signal in the absence of a ligand, by ligand-withdrawal or the activity of a constitutively active receptor. The pathway ends with regulation of a downstream cellular process, e.g. transcription.
    GO:0042730    fibrinolysis    A process that solubilizes fibrin in the bloodstream of a multicellular organism, chiefly by the proteolytic action of plasmin.
    GO:0007599    hemostasis    The stopping of bleeding (loss of body fluid) or the arrest of the circulation to an organ or part.
    GO:0048712    negative regulation of astrocyte differentiation    Any process that stops, prevents, or reduces the frequency, rate or extent of astrocyte differentiation.
    GO:0045861    negative regulation of proteolysis    Any process that stops, prevents, or reduces the frequency, rate or extent of the hydrolysis of a peptide bond or bonds within a protein.
    GO:0030168    platelet activation    A series of progressive, overlapping events triggered by exposure of the platelets to subendothelial tissue. These events include shape change, adhesiveness, aggregation, and release reactions. When carried through to completion, these events lead to the formation of a stable hemostatic plug.
    GO:0030194    positive regulation of blood coagulation    Any process that activates or increases the frequency, rate or extent of blood coagulation.
    GO:0030307    positive regulation of cell growth    Any process that activates or increases the frequency, rate, extent or direction of cell growth.
    GO:0008284    positive regulation of cell proliferation    Any process that activates or increases the rate or extent of cell proliferation.
    GO:0032967    positive regulation of collagen biosynthetic process    Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of collagen, any of a group of fibrous proteins of very high tensile strength that form the main component of connective tissue in animals.
    GO:0014068    positive regulation of phosphatidylinositol 3-kinase signaling    Any process that activates or increases the frequency, rate or extent of signal transduction mediated by the phosphatidylinositol 3-kinase cascade.
    GO:1900738    positive regulation of phospholipase C-activating G-protein coupled receptor signaling pathway    Any process that activates or increases the frequency, rate or extent of phospholipase C-activating G-protein coupled receptor signaling pathway.
    GO:0001934    positive regulation of protein phosphorylation    Any process that activates or increases the frequency, rate or extent of addition of phosphate groups to amino acids within a protein.
    GO:2000379    positive regulation of reactive oxygen species metabolic process    Any process that activates or increases the frequency, rate or extent of reactive oxygen species metabolic process.
    GO:0051281    positive regulation of release of sequestered calcium ion into cytosol    Any process that activates or increases the frequency, rate or extent of the release into the cytosolic compartment of calcium ions sequestered in the endoplasmic reticulum or mitochondria.
    GO:0051258    protein polymerization    The process of creating protein polymers, compounds composed of a large number of component monomers; polymeric proteins may be made up of different or identical monomers. Polymerization occurs by the addition of extra monomers to an existing poly- or oligomeric protein.
    GO:0006508    proteolysis    The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
    GO:0008360    regulation of cell shape    Any process that modulates the surface configuration of a cell.
    GO:0051480    regulation of cytosolic calcium ion concentration    Any process involved in the maintenance of an internal steady state of calcium ions within the cytosol of a cell or between the cytosol and its surroundings.
    GO:0010468    regulation of gene expression    Any process that modulates the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA or circRNA (for protein-coding genes) and the translation of that mRNA or circRNA into protein. Protein maturation is included when required to form an active form of a product from an inactive precursor form.
    GO:0009611    response to wounding    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to the organism.
cellular component
    GO:0072562    blood microparticle    A phospholipid microvesicle that is derived from any of several cell types, such as platelets, blood cells, endothelial cells, or others, and contains membrane receptors as well as other proteins characteristic of the parental cell. Microparticles are heterogeneous in size, and are characterized as microvesicles free of nucleic acids.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
    GO:0005615    extracellular space    That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        THRB_BOVIN | P007351avg 1bbr 1etr 1ets 1ett 1hrt 1id5 1mkw 1mkx 1nl1 1nl2 1tbq 1tbr 1toc 1ucy 1uvt 1uvu 1vit 1ycp 2a1d 2hpp 2ody 2pf1 2pf2 2spt 3pma 3pmb

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 1A0H)