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(-) Description

Title :  DECODING OF METHYLATED HISTONE H3 TAIL BY THE PYGO-BCL9 WNT SIGNALING COMPLEX
 
Authors :  M. Fiedler, M. J. Sanchez-Barrena, M. Nekrasov, J. Mieszczanek, V. Rybin, J. Muller, P. Evans, M. Bienz
Date :  27 Feb 08  (Deposition) - 17 Jun 08  (Release) - 06 Nov 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.60
Chains :  Asym. Unit :  A,B,C,D,P,R
Biol. Unit 1:  A,B,P  (1x)
Biol. Unit 2:  C,D,R  (1x)
Keywords :  Gene Regulation, Wnt Signaling Pathway, Wnt Signaling Complex, Chromosomal Rearrangement, Signaling Protein, Bcl9 Hd1 Domain, Hpygo1 Phd Domain, Proto-Oncogene, Phosphoprotein, Histone H3K4Me2, Zinc, Nucleus, Zinc-Finger, Metal-Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  M. Fiedler, M. J. Sanchez-Barrena, M. Nekrasov, J. Mieszczanek, V. Rybin, J. Muller, P. Evans, M. Bienz
Decoding Of Methylated Histone H3 Tail By The Pygo- Bcl9 Wnt Signaling Complex.
Mol. Cell V. 30 507 2008
PubMed-ID: 18498752  |  Reference-DOI: 10.1016/J.MOLCEL.2008.03.011

(-) Compounds

Molecule 1 - PYGOPUS HOMOLOG 1
    ChainsA, C
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System StrainBL21(DE3)
    Expression System Taxid469008
    Expression System VariantCODONPLUS-RIL
    Expression System VectorBI-CISTRONIC EXPRESSION VECTOR
    FragmentPHD DOMAIN, RESIDUES 340-398
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymHPYGO1
 
Molecule 2 - B-CELL CLL/LYMPHOMA 9 PROTEIN
    ChainsB, D
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System StrainBL21(DE3)
    Expression System Taxid469008
    Expression System VariantCODONPLUS-RIL
    Expression System VectorBI-CISTRONIC EXPRESSION VECTOR
    FragmentHD1 DOMAIN, RESIDUES 177-205
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymB-CELL LYMPHOMA 9 PROTEIN, BCL-9, PROTEIN LEGLESS HOMOLOG, BCL9
 
Molecule 3 - HISTONE H3 TAIL
    ChainsP, R
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    Other Details18-MER H3R2ME2AK4ME2, DIMETHYLATION AT LYS K4, ASYMMETRIC DIMETHYLATION AT R2
    SyntheticYES

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit ABCDPR
Biological Unit 1 (1x)AB  P 
Biological Unit 2 (1x)  CD R

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 9)

Asymmetric Unit (4, 9)
No.NameCountTypeFull Name
1DA22Mod. Amino AcidNG,NG-DIMETHYL-L-ARGININE
2GOL1Ligand/IonGLYCEROL
3MLY2Mod. Amino AcidN-DIMETHYL-LYSINE
4ZN4Ligand/IonZINC ION
Biological Unit 1 (3, 3)
No.NameCountTypeFull Name
1DA21Mod. Amino AcidNG,NG-DIMETHYL-L-ARGININE
2GOL1Ligand/IonGLYCEROL
3MLY1Mod. Amino AcidN-DIMETHYL-LYSINE
4ZN-1Ligand/IonZINC ION
Biological Unit 2 (2, 2)
No.NameCountTypeFull Name
1DA21Mod. Amino AcidNG,NG-DIMETHYL-L-ARGININE
2GOL-1Ligand/IonGLYCEROL
3MLY1Mod. Amino AcidN-DIMETHYL-LYSINE
4ZN-1Ligand/IonZINC ION

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLN A:354 , HIS A:368 , HOH A:2092 , HOH A:2093 , GLY C:336 , ASN C:348BINDING SITE FOR RESIDUE GOL A1399
2AC2SOFTWARECYS C:343 , CYS C:346 , HIS C:368 , CYS C:371BINDING SITE FOR RESIDUE ZN C1399
3AC3SOFTWARECYS C:359 , CYS C:363 , CYS C:392 , CYS C:395BINDING SITE FOR RESIDUE ZN C1400
4AC4SOFTWARECYS A:343 , CYS A:346 , HIS A:368 , CYS A:371BINDING SITE FOR RESIDUE ZN A1400
5AC5SOFTWARECYS A:359 , CYS A:363 , CYS A:392 , CYS A:395BINDING SITE FOR RESIDUE ZN A1401

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2VPG)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2VPG)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2VPG)

(-) PROSITE Motifs  (2, 4)

Asymmetric Unit (2, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ZF_PHD_2PS50016 Zinc finger PHD-type profile.PYGO1_HUMAN340-398
 
  2A:340-398
C:340-398
2ZF_PHD_1PS01359 Zinc finger PHD-type signature.PYGO1_HUMAN343-395
 
  2A:343-395
C:343-395
Biological Unit 1 (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ZF_PHD_2PS50016 Zinc finger PHD-type profile.PYGO1_HUMAN340-398
 
  1A:340-398
-
2ZF_PHD_1PS01359 Zinc finger PHD-type signature.PYGO1_HUMAN343-395
 
  1A:343-395
-
Biological Unit 2 (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ZF_PHD_2PS50016 Zinc finger PHD-type profile.PYGO1_HUMAN340-398
 
  1-
C:340-398
2ZF_PHD_1PS01359 Zinc finger PHD-type signature.PYGO1_HUMAN343-395
 
  1-
C:343-395

(-) Exons   (3, 6)

Asymmetric Unit (3, 6)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1ENST000002347391ENSE00001344656chr1:147013182-147013444263BCL9_HUMAN-00--
1.3ENST000002347393ENSE00001344647chr1:147076570-147076704135BCL9_HUMAN-00--
1.4ENST000002347394ENSE00001344643chr1:147078577-14707865983BCL9_HUMAN-00--
1.5bENST000002347395bENSE00001156130chr1:147083377-147083688312BCL9_HUMAN1-18180--
1.6bENST000002347396bENSE00000824226chr1:147084682-147084998317BCL9_HUMAN18-1241070--
1.7ENST000002347397ENSE00000787540chr1:147086226-147086415190BCL9_HUMAN124-187642B:174-187
D:174-187
14
14
1.8ENST000002347398ENSE00000787541chr1:147087603-147087702100BCL9_HUMAN187-220342B:187-203
D:187-203
17
17
1.9ENST000002347399ENSE00000787543chr1:147090622-1470928632242BCL9_HUMAN221-9687480--
1.10ENST0000023473910ENSE00000903093chr1:147094072-147094332261BCL9_HUMAN968-1055880--
1.11ENST0000023473911ENSE00001156122chr1:147095643-1470980172375BCL9_HUMAN1055-14263720--

2.2bENST000003593032bENSE00001974165chr6:27858570-27858160411H31_HUMAN1-1361362P:1-7
R:1-7
7
7

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:61
 aligned with PYGO1_HUMAN | Q9Y3Y4 from UniProtKB/Swiss-Prot  Length:419

    Alignment length:61
                                   347       357       367       377       387       397 
          PYGO1_HUMAN   338 DPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCMAD 398
               SCOP domains ------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------- Pfam domains
         Sec.struct. author ..................eee.......eeehhhhh.hhhhhhhhhhh..eee.hhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) --ZF_PHD_2  PDB: A:340-398 UniProt: 340-398                   PROSITE (1)
                PROSITE (2) -----ZF_PHD_1  PDB: A:343-395 UniProt: 343-395            --- PROSITE (2)
                 Transcript ------------------------------------------------------------- Transcript
                 2vpg A 338 MAVYPCGICTNEVNDDQDAILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCMAD 398
                                   347       357       367       377       387       397 

Chain B from PDB  Type:PROTEIN  Length:30
 aligned with BCL9_HUMAN | O00512 from UniProtKB/Swiss-Prot  Length:1426

    Alignment length:30
                                   183       193       203
           BCL9_HUMAN   174 AKVVYVFSTEMANKAAEAVLKGQVETIVSF 203
               SCOP domains ------------------------------ SCOP domains
               CATH domains ------------------------------ CATH domains
               Pfam domains ------------------------------ Pfam domains
         Sec.struct. author ....eeehhhhhhhhhhhhhh......... Sec.struct. author
                 SAPs(SNPs) ------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------ PROSITE
           Transcript 1 (1) Exon 1.7      ---------------- Transcript 1 (1)
           Transcript 1 (2) -------------Exon 1.8          Transcript 1 (2)
                 2vpg B 174 GAMVYVFSTEMANKAAEAVLKGQVETIVSF 203
                                   183       193       203

Chain C from PDB  Type:PROTEIN  Length:63
 aligned with PYGO1_HUMAN | Q9Y3Y4 from UniProtKB/Swiss-Prot  Length:419

    Alignment length:63
                                   345       355       365       375       385       395   
          PYGO1_HUMAN   336 SSDPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCMAD 398
               SCOP domains --------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------- CATH domains
           Pfam domains (1) ------PHD-2vpgC01 C:342-398                                     Pfam domains (1)
           Pfam domains (2) ------PHD-2vpgC02 C:342-398                                     Pfam domains (2)
         Sec.struct. author ....................eee.......eeehhhhh.hhhhhhhhhhh..eee.hhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ----ZF_PHD_2  PDB: C:340-398 UniProt: 340-398                   PROSITE (1)
                PROSITE (2) -------ZF_PHD_1  PDB: C:343-395 UniProt: 343-395            --- PROSITE (2)
                 Transcript --------------------------------------------------------------- Transcript
                 2vpg C 336 GAMAVYPCGICTNEVNDDQDAILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCMAD 398
                                   345       355       365       375       385       395   

Chain D from PDB  Type:PROTEIN  Length:30
 aligned with BCL9_HUMAN | O00512 from UniProtKB/Swiss-Prot  Length:1426

    Alignment length:30
                                   183       193       203
           BCL9_HUMAN   174 AKVVYVFSTEMANKAAEAVLKGQVETIVSF 203
               SCOP domains ------------------------------ SCOP domains
               CATH domains ------------------------------ CATH domains
               Pfam domains ------------------------------ Pfam domains
         Sec.struct. author ....eeehhhhhhhhhhhhhh......... Sec.struct. author
                 SAPs(SNPs) ------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------ PROSITE
           Transcript 1 (1) Exon 1.7      ---------------- Transcript 1 (1)
           Transcript 1 (2) -------------Exon 1.8          Transcript 1 (2)
                 2vpg D 174 GAMVYVFSTEMANKAAEAVLKGQVETIVSF 203
                                   183       193       203

Chain P from PDB  Type:PROTEIN  Length:7
 aligned with H31_HUMAN | P68431 from UniProtKB/Swiss-Prot  Length:136

    Alignment length:7
            H31_HUMAN     2 ARTKQTA   8
               SCOP domains ------- SCOP domains
               CATH domains ------- CATH domains
               Pfam domains ------- Pfam domains
         Sec.struct. author ....... Sec.struct. author
                 SAPs(SNPs) ------- SAPs(SNPs)
                    PROSITE ------- PROSITE
               Transcript 2 2.2b    Transcript 2
                 2vpg P   1 ArTkQTA   7
                             | |   
                             2-DA2 
                               4-MLY

Chain R from PDB  Type:PROTEIN  Length:7
 aligned with H31_HUMAN | P68431 from UniProtKB/Swiss-Prot  Length:136

    Alignment length:7
            H31_HUMAN     2 ARTKQTA   8
               SCOP domains ------- SCOP domains
               CATH domains ------- CATH domains
               Pfam domains ------- Pfam domains
         Sec.struct. author ....... Sec.struct. author
                 SAPs(SNPs) ------- SAPs(SNPs)
                    PROSITE ------- PROSITE
               Transcript 2 2.2b    Transcript 2
                 2vpg R   1 ArTkQTA   7
                             | |   
                             | |   
                             2-DA2 
                               4-MLY

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2VPG)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2VPG)

(-) Pfam Domains  (1, 2)

Asymmetric Unit
(-)
Family: PHD (44)
1aPHD-2vpgC01C:342-398
1bPHD-2vpgC02C:342-398

(-) Gene Ontology  (48, 57)

Asymmetric Unit(hide GO term definitions)
Chain A,C   (PYGO1_HUMAN | Q9Y3Y4)
molecular function
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0008270    zinc ion binding    Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
    GO:0016055    Wnt signaling pathway    The series of molecular signals initiated by binding of a Wnt protein to a frizzled family receptor on the surface of the target cell and ending with a change in cell state.
    GO:1904837    beta-catenin-TCF complex assembly    The aggregation, arrangement and bonding together of a set of components to form a beta-catenin-TCF complex.
    GO:0002244    hematopoietic progenitor cell differentiation    The process in which precursor cell type acquires the specialized features of a hematopoietic progenitor cell, a class of cell types including myeloid progenitor cells and lymphoid progenitor cells.
    GO:0001822    kidney development    The process whose specific outcome is the progression of the kidney over time, from its formation to the mature structure. The kidney is an organ that filters the blood and/or excretes the end products of body metabolism in the form of urine.
    GO:0045944    positive regulation of transcription from RNA polymerase II promoter    Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter.
    GO:0009791    post-embryonic development    The process whose specific outcome is the progression of the organism over time, from the completion of embryonic development to the mature structure. See embryonic development.
    GO:0034504    protein localization to nucleus    A process in which a protein transports or maintains the localization of another protein to the nucleus.
    GO:0007286    spermatid development    The process whose specific outcome is the progression of a spermatid over time, from its formation to the mature structure.
    GO:0007289    spermatid nucleus differentiation    The specialization of the spermatid nucleus during the development of a spermatid into a mature male gamete competent for fertilization.
cellular component
    GO:0005654    nucleoplasm    That part of the nuclear content other than the chromosomes or the nucleolus.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

Chain B,D   (BCL9_HUMAN | O00512)
molecular function
    GO:0008013    beta-catenin binding    Interacting selectively and non-covalently with the beta subunit of the catenin complex.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
    GO:0016055    Wnt signaling pathway    The series of molecular signals initiated by binding of a Wnt protein to a frizzled family receptor on the surface of the target cell and ending with a change in cell state.
    GO:1904837    beta-catenin-TCF complex assembly    The aggregation, arrangement and bonding together of a set of components to form a beta-catenin-TCF complex.
    GO:0060070    canonical Wnt signaling pathway    The series of molecular signals initiated by binding of a Wnt protein to a frizzled family receptor on the surface of the target cell, followed by propagation of the signal via beta-catenin, and ending with a change in transcription of target genes. In this pathway, the activated receptor signals via downstream effectors that result in the inhibition of beta-catenin phosphorylation, thereby preventing degradation of beta-catenin. Stabilized beta-catenin can then accumulate and travel to the nucleus to trigger changes in transcription of target genes.
    GO:0014908    myotube differentiation involved in skeletal muscle regeneration    The process in which a relatively unspecialized cell acquires specialized features of a myotube cell. Myotube differentiation starts with myoblast fusion and the appearance of specific cell markers (this is the cell development step). Then individual myotubes can fuse to form bigger myotubes and start to contract. This process occurs as part of the process of skeletal muscle regeneration. Myotubes are multinucleated cells that are formed when proliferating myoblasts exit the cell cycle, differentiate and fuse.
    GO:0045944    positive regulation of transcription from RNA polymerase II promoter    Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter.
    GO:0017015    regulation of transforming growth factor beta receptor signaling pathway    Any process that modulates the frequency, rate or extent of activity of any TGF-beta receptor signaling pathway.
    GO:0035914    skeletal muscle cell differentiation    The process in which a relatively unspecialized cell acquires specialized features of a skeletal muscle cell, a somatic cell located in skeletal muscle.
    GO:0035019    somatic stem cell population maintenance    Any process by which an organism retains a population of somatic stem cells, undifferentiated cells in the embryo or adult which can undergo unlimited division and give rise to cell types of the body other than those of the germ-line.
cellular component
    GO:0005794    Golgi apparatus    A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions.
    GO:0005801    cis-Golgi network    The network of interconnected tubular and cisternal structures located at the convex side of the Golgi apparatus, which abuts the endoplasmic reticulum.
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005654    nucleoplasm    That part of the nuclear content other than the chromosomes or the nucleolus.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

Chain P,R   (H31_HUMAN | P68431)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0042393    histone binding    Interacting selectively and non-covalently with a histone, any of a group of water-soluble proteins found in association with the DNA of eukaroytic chromosomes. They are involved in the condensation and coiling of chromosomes during cell division and have also been implicated in nonspecific suppression of gene activity.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0046982    protein heterodimerization activity    Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer.
biological process
    GO:0006335    DNA replication-dependent nucleosome assembly    The formation of nucleosomes on newly replicated DNA, coupled to strand elongation.
    GO:0007596    blood coagulation    The sequential process in which the multiple coagulation factors of the blood interact, ultimately resulting in the formation of an insoluble fibrin clot; it may be divided into three stages: stage 1, the formation of intrinsic and extrinsic prothrombin converting principle; stage 2, the formation of thrombin; stage 3, the formation of stable fibrin polymers.
    GO:0044267    cellular protein metabolic process    The chemical reactions and pathways involving a specific protein, rather than of proteins in general, occurring at the level of an individual cell. Includes cellular protein modification.
    GO:0000183    chromatin silencing at rDNA    Repression of transcription of ribosomal DNA by altering the structure of chromatin.
    GO:0031047    gene silencing by RNA    Any process in which RNA molecules inactivate expression of target genes.
    GO:0045814    negative regulation of gene expression, epigenetic    Any epigenetic process that stops, prevents or reduces the rate of gene expression.
    GO:0006334    nucleosome assembly    The aggregation, arrangement and bonding together of a nucleosome, the beadlike structural units of eukaryotic chromatin composed of histones and DNA.
    GO:0002230    positive regulation of defense response to virus by host    Any host process that results in the promotion of antiviral immune response mechanisms, thereby limiting viral replication.
    GO:0045815    positive regulation of gene expression, epigenetic    Any epigenetic process that activates or increases the rate of gene expression.
    GO:0051290    protein heterotetramerization    The formation of a protein heterotetramer, a macromolecular structure consisting of four noncovalently associated subunits, of which not all are identical.
    GO:0060968    regulation of gene silencing    Any process that modulates the rate, frequency, or extent of gene silencing, the transcriptional or post-transcriptional process carried out at the cellular level that results in long-term gene inactivation.
    GO:0032200    telomere organization    A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of telomeres, terminal regions of a linear chromosome that include the telomeric DNA repeats and associated proteins.
    GO:0098792    xenophagy    The macroautophagy process in which a region of cytoplasm containing an intracellular pathogen or some part of an intracellular pathogen (e.g. viral capsid) is enclosed in a double membrane bound autophagosome, which then fuses with the lysosome leading to degradation of the contents.
cellular component
    GO:0005694    chromosome    A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information.
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0000228    nuclear chromosome    A chromosome that encodes the nuclear genome and is found in the nucleus of a eukaryotic cell during the cell cycle phases when the nucleus is intact.
    GO:0000784    nuclear chromosome, telomeric region    The terminal region of a linear nuclear chromosome that includes the telomeric DNA repeats and associated proteins.
    GO:0000788    nuclear nucleosome    A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA in the nucleus into higher order structures.
    GO:0005654    nucleoplasm    That part of the nuclear content other than the chromosomes or the nucleolus.
    GO:0000786    nucleosome    A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
    GO:0043234    protein complex    A stable macromolecular complex composed (only) of two or more polypeptide subunits along with any covalently attached molecules (such as lipid anchors or oligosaccharide) or non-protein prosthetic groups (such as nucleotides or metal ions). Prosthetic group in this context refers to a tightly bound cofactor. The component polypeptide subunits may be identical.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        BCL9_HUMAN | O005122gl7 2vp7 2vpb 2vpd 2vpe 3sl9
        H31_HUMAN | P684311cs9 1ct6 1guw 1o9s 1q3l 2b2t 2b2u 2b2v 2b2w 2c1j 2c1n 2cv5 2kwj 2kwk 2l75 2lbm 2m0o 2ndf 2ndg 2oq6 2ot7 2ox0 2ri7 2uxn 2v89 2x0l 3a1b 3afa 3avr 3ayw 3aze 3azf 3azg 3azh 3azi 3azj 3azk 3azl 3azm 3azn 3b95 3kmt 3kqi 3lqi 3lqj 3o34 3o35 3o37 3qj6 3rig 3riy 3sou 3sow 3u31 3u3d 3u4s 3u5n 3u5o 3u5p 3uee 3uef 3uig 3uii 3uik 3v43 3w96 3w97 3w98 3w99 3wa9 3waa 3wkj 3x1s 3x1t 3x1u 3x1v 3zg6 3zvy 4a0j 4a0n 4a7j 4bd3 4c1q 4f4u 4f56 4ft2 4ft4 4fwf 4hon 4i51 4l7x 4lk9 4lka 4llb 4lxl 4n4h 4qbq 4qbr 4qbs 4tn7 4u68 4up0 4uy4 4x3k 4y6l 4yhp 4yhz 4ym5 4ym6 4z0r 4z2m 5av5 5av6 5av8 5av9 5avb 5avc 5b24 5b2i 5b2j 5b31 5c11 5c13 5c3i 5cpi 5cpj 5cpk 5d6y 5dah 5fb0 5fb1 5ffv 5gse 5gsu 5gt0 5gt3 5gtc 5hjb 5hjc 5hjd 5hyn 5iql 5j3v 5j9s 5jhn 5jin 5jiy 5jj0 5jrg 5kjh 5kji 5kkl 5m5g 5svx 5svy 5t0k 5t0m 5t1g 5t1i 5t8r 5tbn 5tdr 5tdw 5v21 5v22 5va6
        PYGO1_HUMAN | Q9Y3Y42vp7 2vpb 2vpd 2vpe

(-) Related Entries Specified in the PDB File

2vp7 DECODING OF METHYLATED HISTONE H3 TAIL BY THE PYGO-BCL9 WNT SIGNALING COMPLEX
2vpb DECODING OF METHYLATED HISTONE H3 TAIL BY THE PYGO-BCL9 WNT SIGNALING COMPLEX
2vpd DECODING OF METHYLATED HISTONE H3 TAIL BY THE PYGO-BCL9 WNT SIGNALING COMPLEX
2vpe DECODING OF METHYLATED HISTONE H3 TAIL BY THE PYGO-BCL9 WNT SIGNALING COMPLEX