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(-) Description

Title :  SOLUTION NMR STRUCTURE OF PHF20 PHD DOMAIN IN COMPLEX WITH A HISTONE H3K4ME2 PEPTIDE
 
Authors :  G. Cui, M. V. Botuyan, G. Mer
Date :  12 Sep 16  (Deposition) - 12 Oct 16  (Release) - 02 Nov 16  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A,C  (20x)
NMR Structure *:  A,C  (1x)
Keywords :  Phd Finger, Methylated Lysine, Transcription - Structural Protein Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  B. J. Klein, X. Wang, G. Cui, C. Yuan, M. V. Botuyan, K. Lin, Y. Lu, X. Wang Y. Zhao, C. J. Bruns, G. Mer, X. Shi, T. G. Kutateladze
Phf20 Readers Link Methylation Of Histone H3K4 And P53 With H4K16 Acetylation.
Cell Rep V. 17 1158 2016
PubMed-ID: 27760318  |  Reference-DOI: 10.1016/J.CELREP.2016.09.056

(-) Compounds

Molecule 1 - PHD FINGER PROTEIN 20
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Fragment: RESIDUES 646-699
    Gene: PHF20, C20ORF104, GLEA2, HCA58, NZF, TZP
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: GLIOMA-EXPRESSED ANTIGEN 2,HEPATOCELLULAR CARCINOMA- ASSOCIATED ANTIGEN 58,NOVEL ZINC FINGER PROTEIN,TRANSCRIPTION FACTOR TZP
 
Molecule 2 - HISTONE H3.1
    Chains: C
    Engineered: YES
    Fragment: RESIDUES 2-12
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: HISTONE H3/A,HISTONE H3/B,HISTONE H3/C,HISTONE H3/D,HISTONE H3/F,HISTONE H3/H,HISTONE H3/I,HISTONE H3/J,HISTONE H3/K,HISTONE H3/L
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
NMR Structure (20x): AC
NMR Structure * (1x): AC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 4)

NMR Structure (3, 4)
No.NameCountTypeFull Name
1MLY1Mod. Amino AcidN-DIMETHYL-LYSINE
2NH21Mod. Amino AcidAMINO GROUP
3ZN2Ligand/IonZINC ION
NMR Structure * (2, 2)
No.NameCountTypeFull Name
1MLY1Mod. Amino AcidN-DIMETHYL-LYSINE
2NH21Mod. Amino AcidAMINO GROUP
3ZN-1Ligand/IonZINC ION

(-) Sites  (2, 2)

NMR Structure (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECYS A:23 , CYS A:26 , CYS A:28 , CYS A:48 , CYS A:51binding site for residue ZN A 800
2AC2SOFTWARECYS A:9 , CYS A:11 , HIS A:31 , CYS A:34binding site for residue ZN A 801

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5TBN)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5TBN)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5TBN)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5TBN)

(-) Exons   (0, 0)

(no "Exon" information available for 5TBN)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:57
                                                                                        
               SCOP domains --------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------- Pfam domains
         Sec.struct. author .........ee...........eeee.....eeehhhhhh................. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------- Transcript
                  5tbn A -3 GHMDRYDFEVVRCICEVQEENDFMIQCEECQCWQHGVCMGLLEENVPEKYTCYVCQD 53
                                     6        16        26        36        46       


Chain C from PDB  Type:PROTEIN  Length:12
                                           
               SCOP domains ------------ SCOP domains
               CATH domains ------------ CATH domains
               Pfam domains ------------ Pfam domains
         Sec.struct. author ..eee....... Sec.struct. author
                 SAPs(SNPs) ------------ SAPs(SNPs)
                    PROSITE ------------ PROSITE
                 Transcript ------------ Transcript
                  5tbn C  1 ARTkQTARKSTx 12
                               |    10 |
                               4-MLY  12-NH2
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5TBN)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5TBN)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5TBN)

(-) Gene Ontology  (44, 48)

NMR Structure(hide GO term definitions)

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  PHF20_HUMAN | Q9BVI0
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        H31_HUMAN | P68431: 1cs9 1ct6 1guw 1o9s 1q3l 2b2t 2b2u 2b2v 2b2w 2c1j 2c1n 2cv5 2kwj 2kwk 2l75 2lbm 2m0o 2ndf 2ndg 2oq6 2ot7 2ox0 2ri7 2uxn 2v89 2vpg 2x0l 3a1b 3afa 3avr 3ayw 3aze 3azf 3azg 3azh 3azi 3azj 3azk 3azl 3azm 3azn 3b95 3kmt 3kqi 3lqi 3lqj 3o34 3o35 3o37 3qj6 3rig 3riy 3sou 3sow 3u31 3u3d 3u4s 3u5n 3u5o 3u5p 3uee 3uef 3uig 3uii 3uik 3v43 3w96 3w97 3w98 3w99 3wa9 3waa 3wkj 3x1s 3x1t 3x1u 3x1v 3zg6 3zvy 4a0j 4a0n 4a7j 4bd3 4c1q 4f4u 4f56 4ft2 4ft4 4fwf 4hon 4i51 4l7x 4lk9 4lka 4llb 4lxl 4n4h 4qbq 4qbr 4qbs 4tn7 4u68 4up0 4uy4 4x3k 4y6l 4yhp 4yhz 4ym5 4ym6 4z0r 4z2m 5av5 5av6 5av8 5av9 5avb 5avc 5b24 5b2i 5b2j 5b31 5c11 5c13 5c3i 5cpi 5cpj 5cpk 5d6y 5dah 5fb0 5fb1 5ffv 5gse 5gsu 5gt0 5gt3 5gtc 5hjb 5hjc 5hjd 5hyn 5iql 5j3v 5j9s 5jhn 5jin 5jiy 5jj0 5jrg 5kjh 5kji 5kkl 5m5g 5svx 5svy 5t0k 5t0m 5t1g 5t1i 5t8r 5tdr 5tdw 5v21 5v22 5va6
        PHF20_HUMAN | Q9BVI0: 2ldm 3p8d 3q1j 3qii 3sd4 5tab

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