Chain A from PDB Type:PROTEIN Length:217
aligned with PAPD_ECOLX | P15319 from UniProtKB/Swiss-Prot Length:239
Alignment length:217
31 41 51 61 71 81 91 101 111 121 131 141 151 161 171 181 191 201 211 221 231
PAPD_ECOLX 22 AVSLDRTRAVFDGSEKSMTLDISNDNKQLPYLAQAWIENENQEKIITGPVIATPPVQRLEPGAKSMVRLSTTPDISKLPQDRESLFYFNLREIPPRSEKANVLQIALQTKIKLFYRPAAIKTRPNEVWQDQLILNKVSGGYRIENPTPYYVTVIGLGGSEKQAEEGEFETVMLSPRSEQTVKSANYNTPYLSYINDYGGRPVLSFICNGSRCSVKKE 238
SCOP domains d2uy6a1 A:1-124 Pilus chaperone PapD, N-domain d2uy6a2 A:125-217 PapD SCOP domains
CATH domains 2uy6A01 A:1-121 PapD-like 2uy6A02 A:122-213 [code=2.60.40.1070, no name defined] ---- CATH domains
Pfam domains Pili_assembly_N-2uy6A01 A:1-121 -------------------Pili_assembly_C-2uy6A02 A:141-204 ------------- Pfam domains
Sec.struct. author .eee...eeeee....eeeeeeee......eeeeeeee...........eeee..........eeeeeeee.hhhhhh.....eeeeeeeeee........eeeeeeeeeeeeeeehhhhh......hhhhheeeee..eeeeee.....eeeeeee.hhhhhhhh....eee...eeeeee.......eeee........eeeeee...eeee... Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE -----------------------------------------------------------------------------PILI_CHAPERONE -------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
2uy6 A 1 AVSLDRTRAVFDGSEKSMTLDISNDNKQLPYLAQAWIENENQEKIITGPVIATPPVQRLEPGAKSMVRLSTTPDISKLPQDRESLFYFNLREIPPRSEKANVLQIALQTKIKLFYRPAAIKTRPNEVWQDQLILNKVSGGYRIENPTPYYVTVIGLGGSEKQAEEGEFETVMLSPRSEQTVKSANYNTPYLSYINDYGGRPVLSFICNGSRCSVKKE 217
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210
Chain A from PDB Type:PROTEIN Length:217
aligned with Q1R2W9_ECOUT | Q1R2W9 from UniProtKB/TrEMBL Length:239
Alignment length:217
31 41 51 61 71 81 91 101 111 121 131 141 151 161 171 181 191 201 211 221 231
Q1R2W9_ECOUT 22 AVSLDRTRAVFDGSEKSMTLDISNDNKQLPYLAQAWIENENQEKIITGPVIATPPVQRLEPGAKSMVRLSTTPDISKLPQDRESLFYFNLREIPPRSEKANVLQIALQTKIKLFYRPAAIKTRPNEVWQDQLILNKVSGGYRIENPTPYYVTVIGLGGSEKQAEEGEFETVMLSPRSEQTVKSANYNTPYLSYINDYGGRPVLSFICNGSRCSVKKE 238
SCOP domains d2uy6a1 A:1-124 Pilus chaperone PapD, N-domain d2uy6a2 A:125-217 PapD SCOP domains
CATH domains 2uy6A01 A:1-121 PapD-like 2uy6A02 A:122-213 [code=2.60.40.1070, no name defined] ---- CATH domains
Pfam domains Pili_assembly_N-2uy6A01 A:1-121 -------------------Pili_assembly_C-2uy6A02 A:141-204 ------------- Pfam domains
Sec.struct. author .eee...eeeee....eeeeeeee......eeeeeeee...........eeee..........eeeeeeee.hhhhhh.....eeeeeeeeee........eeeeeeeeeeeeeeehhhhh......hhhhheeeee..eeeeee.....eeeeeee.hhhhhhhh....eee...eeeeee.......eeee........eeeeee...eeee... Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
2uy6 A 1 AVSLDRTRAVFDGSEKSMTLDISNDNKQLPYLAQAWIENENQEKIITGPVIATPPVQRLEPGAKSMVRLSTTPDISKLPQDRESLFYFNLREIPPRSEKANVLQIALQTKIKLFYRPAAIKTRPNEVWQDQLILNKVSGGYRIENPTPYYVTVIGLGGSEKQAEEGEFETVMLSPRSEQTVKSANYNTPYLSYINDYGGRPVLSFICNGSRCSVKKE 217
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210
Chain B from PDB Type:PROTEIN Length:150
aligned with PAPA_ECOLX | P04127 from UniProtKB/Swiss-Prot Length:185
Alignment length:154
41 51 61 71 81 91 101 111 121 131 141 151 161 171 181
PAPA_ECOLX 32 KVTFNGTVVDAPCSISQKSADQSIDFGQLSKSFLEAGGVSKPMDLDIELVNCDITAFKGGNGAKKGTVKLAFTGPIVNGHSDELDTNGGTGTAIVVQGAGKNVVFDGSEGDANTLKDGENVLHYTAVVKKSSAVGAAVTEGAFSAVANFNLTYQ 185
SCOP domains d2uy6b1 B:10-163 Pap fimbrial major pilin protein PapA SCOP domains
CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .eeeeeeee....eee.............hhhhhhhh.....eeeeeeee..........----...eeeeee..ee..eeeeee......eeeeee........eeee...........eeeeeeeeee.............eeeeeeeeee. Sec.struct. author
SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
2uy6 B 10 KVTFNNTVVDAPCSISQKSADQSIDFGQLSKSFLEAGGVSKPMDLDIELVNCDITAFKGG----KGTVKLAFTGPIVNGHSDELDTNGGTGLAIVVQGAGKNVVFDGSEGDANTLKDGENVLHYTAVVKKSSAVGAAVTEGAFSAVANFNLTYQ 163
19 29 39 49 59 69 | 79 89 99 109 119 129 139 149 159
69 74
Chain C from PDB Type:PROTEIN Length:144
aligned with PAPA_ECOLX | P04127 from UniProtKB/Swiss-Prot Length:185
Alignment length:144
51 61 71 81 91 101 111 121 131 141 151 161 171 181
PAPA_ECOLX 42 APCSISQKSADQSIDFGQLSKSFLEAGGVSKPMDLDIELVNCDITAFKGGNGAKKGTVKLAFTGPIVNGHSDELDTNGGTGTAIVVQGAGKNVVFDGSEGDANTLKDGENVLHYTAVVKKSSAVGAAVTEGAFSAVANFNLTYQ 185
SCOP domains d2uy6c_ C: automated matches SCOP domains
CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
Pfam domains (1) Fimbrial-2uy6C01 C:20-163 Pfam domains (1)
Pfam domains (2) Fimbrial-2uy6C02 C:20-163 Pfam domains (2)
Sec.struct. author ...eehhhhhheeeeeeeeehhhhhh......eeeeeeeeee..............eeeeeee..ee..eeeeee......eeeeeee..ee..........ee...eeeeeeeeeeeee..........eeeeeeeeeeeee. Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
2uy6 C 20 APCSISQKSADQSIDFGQLSKSFLEAGGVSKPMDLDIELVNCDITAFKGGNGAKKGTVKLAFTGPIVNGHSDELDTNGGTGLAIVVQGAGKNVVFDGSEGDANTLKDGENVLHYTAVVKKSSAVGAAVTEGAFSAVANFNLTYQ 163
29 39 49 59 69 79 89 99 109 119 129 139 149 159
Legend: |
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(purple background, 'x', labelled with number + name, e.g. ACE or NH2) |
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extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|' |