Chain A from PDB Type:PROTEIN Length:207
aligned with PAPD_ECOLX | P15319 from UniProtKB/Swiss-Prot Length:239
Alignment length:214
31 41 51 61 71 81 91 101 111 121 131 141 151 161 171 181 191 201 211 221 231
PAPD_ECOLX 22 AVSLDRTRAVFDGSEKSMTLDISNDNKQLPYLAQAWIENENQEKIITGPVIATPPVQRLEPGAKSMVRLSTTPDISKLPQDRESLFYFNLREIPPRSEKANVLQIALQTKIKLFYRPAAIKTRPNEVWQDQLILNKVSGGYRIENPTPYYVTVIGLGGSEKQAEEGEFETVMLSPRSEQTVKSANYNTPYLSYINDYGGRPVLSFICNGSRCSV 235
SCOP domains d1qppa1 A:1-124 Pilus chaperone PapD, N-domain d1qppa2 A:125-214 PapD SCOP domains
CATH domains 1qppA01 A:1-121 PapD-like 1qppA02 A:122-214 [code=2.60.40.1070, no name defined] CATH domains
Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .eee............eeeeeeee.........................eeee..........eeeeeeee.hhhhhh..................-------.............hhhhh.....hhhhh.eeeee..eeeeee.....eeeeeee..hhhhhh.....eee...eeeeee.......eeeee.......eee.eee..eee. Sec.struct. author
SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE -----------------------------------------------------------------------------PILI_CHAPERONE ----------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1qpp A 1 AVSLDRTAAVFDGSEKSMTLDISNDNKQLPYLAQAWIENENQEKIITGPVIATPPVQRLDPGAKSMVRLSTTPDISKLPQDRESLFYFNLREIPPR-------QIALQTKIKLFYRPAAIKTRPNEVWQDQLILNKVSGGYRIENPTPYYVTVIGLGGSEKQAEEGEFETVMLSPRSEQTVKSANYNTPYLSYINDYGGRPVLSFICNGSRCSV 214
10 20 30 40 50 60 70 80 90 | - | 110 120 130 140 150 160 170 180 190 200 210
96 104
Chain B from PDB Type:PROTEIN Length:212
aligned with PAPD_ECOLX | P15319 from UniProtKB/Swiss-Prot Length:239
Alignment length:214
31 41 51 61 71 81 91 101 111 121 131 141 151 161 171 181 191 201 211 221 231
PAPD_ECOLX 22 AVSLDRTRAVFDGSEKSMTLDISNDNKQLPYLAQAWIENENQEKIITGPVIATPPVQRLEPGAKSMVRLSTTPDISKLPQDRESLFYFNLREIPPRSEKANVLQIALQTKIKLFYRPAAIKTRPNEVWQDQLILNKVSGGYRIENPTPYYVTVIGLGGSEKQAEEGEFETVMLSPRSEQTVKSANYNTPYLSYINDYGGRPVLSFICNGSRCSV 235
SCOP domains d1qppb1 B:1-122 Pilus chaperone PapD, N-domain --d1qppb2 B:125-214 PapD SCOP domains
CATH domains 1qppB01 B:1-121 PapD-like 1 qppB02 B:122-213 [code=2.60.40.1070, no name defined] - CATH domains
Pfam domains (1) Pili_assembly_N-1qppB01 B:1-121 -------------------Pili_assembly_C-1qppB03 B:141-204 ---------- Pfam domains (1)
Pfam domains (2) Pili_assembly_N-1qppB02 B:1-121 -------------------Pili_assembly_C-1qppB04 B:141-204 ---------- Pfam domains (2)
Sec.struct. author .eee............eeeeeeee.........................eeee..........eeeeeeee.hhhhhh......................................hhhhh.--..hhhhhheeeee..eeeee......eeeeeee.............eee....eeeee.......eeeee.......eee.eee..eee. Sec.struct. author
SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE -----------------------------------------------------------------------------PILI_CHAPERONE ----------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1qpp B 1 AVSLDRTAAVFDGSEKSMTLDISNDNKQLPYLAQAWIENENQEKIITGPVIATPPVQRLDPGAKSMVRLSTTPDISKLPQDRESLFYFNLREIPPRSEKANVLQIALQTKIKLFYRPAAIKT--NEVWQDQLILNKVSGGYRIENPTPYYVTVIGLGGSEKQAEEGEFETVMLSPRSEQTVKSANYNTPYLSYINDYGGRPVLSFICNGSRCSV 214
10 20 30 40 50 60 70 80 90 100 110 120 | | 130 140 150 160 170 180 190 200 210
122 |
125
Legend: |
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→ Mismatch |
(orange background) |
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- |
→ Gap |
(green background, '-', border residues have a numbering label) |
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→ Modified Residue |
(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name) |
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x |
→ Chemical Group |
(purple background, 'x', labelled with number + name, e.g. ACE or NH2) |
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extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|' |