Chain A from PDB Type:PROTEIN Length:206
aligned with PAPD_ECOLX | P15319 from UniProtKB/Swiss-Prot Length:239
Alignment length:215
31 41 51 61 71 81 91 101 111 121 131 141 151 161 171 181 191 201 211 221 231
PAPD_ECOLX 22 AVSLDRTRAVFDGSEKSMTLDISNDNKQLPYLAQAWIENENQEKIITGPVIATPPVQRLEPGAKSMVRLSTTPDISKLPQDRESLFYFNLREIPPRSEKANVLQIALQTKIKLFYRPAAIKTRPNEVWQDQLILNKVSGGYRIENPTPYYVTVIGLGGSEKQAEEGEFETVMLSPRSEQTVKSANYNTPYLSYINDYGGRPVLSFICNGSRCSVK 236
SCOP domains d1qpxa1 A:1-124 Pilus chaperone PapD, N-domain d1qpxa2 A:125-215 PapD SCOP domains
CATH domains 1qpxA01 A:1-121 PapD-like 1qpxA02 A:122-213 [code=2.60.40.1070, no name defined] -- CATH domains
Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .eee............eeeeeeee.........................eeee..........eeeeeeee.hhhhhh.................---------............hhhhh......hhhhheeeee..eeeeee.....eeeeeee.hhhhhhhh....eee...eeeeee.......eeee........eeeeeee..eeee. Sec.struct. author
SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE -----------------------------------------------------------------------------PILI_CHAPERONE ------------------------------------------------------------------------------------------------------------------------ PROSITE
Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1qpx A 1 AVSLDRTRAVFDGSEKSMTLDISNDNKQLPYLAQAWIENENQEKIITGPVIATPPVQRLDPGAKSMVRLSTTPDISKLPQDRESLFYFNLREIPP---------IALCTKIKLFYRPAAIKTRPNEVWQDQLILNKVSGGYRIENPTPYYVTVIGLGGSEKQAEEGEFETVMLSPRSEQTVKSANYNTPYLSYINDYGGRPVLSFICNGSRCSVK 215
10 20 30 40 50 60 70 80 90 | - | 110 120 130 140 150 160 170 180 190 200 210
95 105
Chain B from PDB Type:PROTEIN Length:202
aligned with PAPD_ECOLX | P15319 from UniProtKB/Swiss-Prot Length:239
Alignment length:209
37 47 57 67 77 87 97 107 117 127 137 147 157 167 177 187 197 207 217 227
PAPD_ECOLX 28 TRAVFDGSEKSMTLDISNDNKQLPYLAQAWIENENQEKIITGPVIATPPVQRLEPGAKSMVRLSTTPDISKLPQDRESLFYFNLREIPPRSEKANVLQIALQTKIKLFYRPAAIKTRPNEVWQDQLILNKVSGGYRIENPTPYYVTVIGLGGSEKQAEEGEFETVMLSPRSEQTVKSANYNTPYLSYINDYGGRPVLSFICNGSRCSVK 236
SCOP domains d1qpxb1 B:7-124 Pilus chaperone PapD, N-domain d1qpxb2 B:125-215 PapD SCOP domains
CATH domains 1qpxB01 B:7-121 PapD-like 1qpxB02 B:122-213 [code=2.60.40.1070, no name defined] -- CATH domains
Pfam domains (1) Pili_assembly_N-1qpxB01 B:7-121 -------------------Pili_assembly_C-1qpxB03 B:141-204 ----------- Pfam domains (1)
Pfam domains (2) Pili_assembly_N-1qpxB02 B:7-121 -------------------Pili_assembly_C-1qpxB04 B:141-204 ----------- Pfam domains (2)
Sec.struct. author ..........eeeeeee..........................eeee..........eeeeeeee.hhhhhh.................-------..............hhhhh.....hhhhh.eeeee..eeeeee.....eeeeeee.hhhhhhhh.....ee...eeeeee.......eeee........eeeeeee..eeee. Sec.struct. author
SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE -----------------------------------------------------------------------PILI_CHAPERONE ------------------------------------------------------------------------------------------------------------------------ PROSITE
Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1qpx B 7 TRAVFDGSEKSMTLDISNDNKQLPYLAQAWIENENQEKIITGPVIATPPVQRLDPGAKSMVRLSTTPDISKLPQDRESLFYFNLREIPP-------VQIALCTKIKLFYRPAAIKTRPNEVWQDQLILNKVSGGYRIENPTPYYVTVIGLGGSEKQAEEGEFETVMLSPRSEQTVKSANYNTPYLSYINDYGGRPVLSFICNGSRCSVK 215
16 26 36 46 56 66 76 86 |- |106 116 126 136 146 156 166 176 186 196 206
95 103
Legend: |
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→ Mismatch |
(orange background) |
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→ Gap |
(green background, '-', border residues have a numbering label) |
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→ Modified Residue |
(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name) |
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x |
→ Chemical Group |
(purple background, 'x', labelled with number + name, e.g. ACE or NH2) |
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extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|' |