Chain A from PDB Type:PROTEIN Length:215
aligned with PAPD_ECOLX | P15319 from UniProtKB/Swiss-Prot Length:239
Alignment length:215
31 41 51 61 71 81 91 101 111 121 131 141 151 161 171 181 191 201 211 221 231
PAPD_ECOLX 22 AVSLDRTRAVFDGSEKSMTLDISNDNKQLPYLAQAWIENENQEKIITGPVIATPPVQRLEPGAKSMVRLSTTPDISKLPQDRESLFYFNLREIPPRSEKANVLQIALQTKIKLFYRPAAIKTRPNEVWQDQLILNKVSGGYRIENPTPYYVTVIGLGGSEKQAEEGEFETVMLSPRSEQTVKSANYNTPYLSYINDYGGRPVLSFICNGSRCSVK 236
SCOP domains d1n0la1 A:1-124 Pilus chaperone PapD, N-domain d1n0la2 A:125-215 PapD SCOP domains
CATH domains 1n0lA01 A:1-121 PapD-like 1n0lA02 A:122-212 [code=2.60.40.1070, no name defined] --- CATH domains
Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .eee...eeeee....eeeeeeee......eeeeeeee.....ee....eeee..eeee....eeeeeeee.hhhhhh.....eeeeeeeeee........eeeeeeeeeeeeeeehhhhh......hhhhheeeee..eeeeee.....eeeeeee.hhhhhhh.....eee...eeeeee.......eeee........eee.eee..eee.. Sec.struct. author
SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE -----------------------------------------------------------------------------PILI_CHAPERONE ------------------------------------------------------------------------------------------------------------------------ PROSITE
Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1n0l A 1 AVSLDRTRAVFDGSEKSmTLDISNDNKQLPYLAQAWIENENQEKIITGPVIATPPVQRLEPGAKSmVRLSTTPDISKLPQDRESLFYFNLREIPPRSEKANVLQIALQTKIKLFYRPAAIKTRPNEVWQDQLILNKVSGGYRIENPTPYYVTVIGLGGSEKQAEEGEFETVmLSPRSEQTVKSANYNTPYLSYINDYGGRPVLSFICNGSRCSVK 215
10 |20 30 40 50 60 | 70 80 90 100 110 120 130 140 150 160 170 | 180 190 200 210
18-MSE 66-MSE 172-MSE
Chain B from PDB Type:PROTEIN Length:118
aligned with PAPE_ECOLX | P08407 from UniProtKB/Swiss-Prot Length:173
Alignment length:138
45 55 65 75 85 95 105 115 125 135 145 155 165
PAPE_ECOLX 36 IPACTVSNTTVDWQDVEIQTLSQNGNHEKEFTVNMRCPYNLGTMKVTITATNTYNNAILVQNTSNTSSDGLLVYLYNSNAGNIGTAITLGTPFTPGKITGNNADKTISLHAKLGYKGNMQNLIAGPFSATATLVASYS 173
SCOP domains d1n0lb_ B: PapE p ilus subunit SCOP domains
CATH domains 1n0lB00 B:1-149 [code=2.60.40.1090, no name defined] CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
Sec.struct. author ....ee..eeee.....------......eeee.ee.........eeee...ee..eee..-----....eee..eeee..eeeee.....ee.......hhhhh.eeee...ee.---------..eeeeeeeee.. Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------------------ Transcript
1n0l B 1 VPACTVSNTTVDWQDVE------NGNHEKEFTVNmRCPYNLGTmKVTITATNTYNNAILVQ-----SSDGLLVYLYNSNAGNIGTAITLGTPFTPGKITGNNADKTISLHAKLGYK---------PFSATATLVASYS 149
|| 21 | - | 41 | 51 | 61 71| | 81 91 101 111 121 | - | 141
1| 28 35 46-MSE 55-MSE 72 78 127 137
13
Chain C from PDB Type:PROTEIN Length:215
aligned with PAPD_ECOLX | P15319 from UniProtKB/Swiss-Prot Length:239
Alignment length:215
31 41 51 61 71 81 91 101 111 121 131 141 151 161 171 181 191 201 211 221 231
PAPD_ECOLX 22 AVSLDRTRAVFDGSEKSMTLDISNDNKQLPYLAQAWIENENQEKIITGPVIATPPVQRLEPGAKSMVRLSTTPDISKLPQDRESLFYFNLREIPPRSEKANVLQIALQTKIKLFYRPAAIKTRPNEVWQDQLILNKVSGGYRIENPTPYYVTVIGLGGSEKQAEEGEFETVMLSPRSEQTVKSANYNTPYLSYINDYGGRPVLSFICNGSRCSVK 236
SCOP domains d1n0lc1 C:1-124 Pilus chaperone PapD, N-domain d1n0lc2 C:125-215 PapD SCOP domains
CATH domains 1n0lC01 C:1-121 PapD-like 1n0lC02 C:122-212 [code=2.60.40.1070, no name defined] --- CATH domains
Pfam domains (1) Pili_assembly_N-1n0lC01 C:1-121 -------------------Pili_assembly_C-1n0lC03 C:141-204 ----------- Pfam domains (1)
Pfam domains (2) Pili_assembly_N-1n0lC02 C:1-121 -------------------Pili_assembly_C-1n0lC04 C:141-204 ----------- Pfam domains (2)
Sec.struct. author .eee...eeeee....eeeeeeee......eeeeeeee.....ee....eeee..eeee....eeeeeeee.hhhhhh.....eeeeeeeeee........eeeeeeeeeeeeeeehhhhh......hhhhheeeee..eeeeee.....eeeeeee.hhhhhhhh....eee...eeeeee.......eeee........eee.eee..eee.. Sec.struct. author
SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE -----------------------------------------------------------------------------PILI_CHAPERONE ------------------------------------------------------------------------------------------------------------------------ PROSITE
Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1n0l C 1 AVSLDRTRAVFDGSEKSmTLDISNDNKQLPYLAQAWIENENQEKIITGPVIATPPVQRLEPGAKSmVRLSTTPDISKLPQDRESLFYFNLREIPPRSEKANVLQIALQTKIKLFYRPAAIKTRPNEVWQDQLILNKVSGGYRIENPTPYYVTVIGLGGSEKQAEEGEFETVmLSPRSEQTVKSANYNTPYLSYINDYGGRPVLSFICNGSRCSVK 215
10 |20 30 40 50 60 | 70 80 90 100 110 120 130 140 150 160 170 | 180 190 200 210
18-MSE 66-MSE 172-MSE
Chain D from PDB Type:PROTEIN Length:107
aligned with PAPE_ECOLX | P08407 from UniProtKB/Swiss-Prot Length:173
Alignment length:138
45 55 65 75 85 95 105 115 125 135 145 155 165
PAPE_ECOLX 36 IPACTVSNTTVDWQDVEIQTLSQNGNHEKEFTVNMRCPYNLGTMKVTITATNTYNNAILVQNTSNTSSDGLLVYLYNSNAGNIGTAITLGTPFTPGKITGNNADKTISLHAKLGYKGNMQNLIAGPFSATATLVASYS 173
SCOP domains d1n0ld_ D: Pa pE pilus subunit SCOP domains
CATH domains 1n0lD00 D:1-1 49 [code=2.60.40.1090, no name de fined] CATH domains
Pfam domains (1) -Fimbrial-1n0 lD01 D:13-149 Pfam domains (1)
Pfam domains (2) -Fimbrial-1n0 lD02 D:13-149 Pfam domains (2)
Sec.struct. author ....ee.......--------------..eeeeeee.........eeeee..ee..eeee.--------.eeeeeee....................eee....eeeeeeeeeee.---------..eeeeeeeee.. Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------------------ Transcript
1n0l D 1 VPACTVSNTTVDW--------------EKEFTVNmRCPYNLGTmKVTITATNTYNNAILVQ--------GLLVYLYNSNAGNIGTAITLGTPFTPGKITGNNADKTISLHAKLGYK---------PFSATATLVASYS 149
|| 21 | - |41 | 51 | 61 71| 81 91 101 111 121 | - | 141
1| 24 39 46-MSE 55-MSE 72 81 127 137
13
Legend: |
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→ Mismatch |
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→ Gap |
(green background, '-', border residues have a numbering label) |
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→ Modified Residue |
(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name) |
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→ Chemical Group |
(purple background, 'x', labelled with number + name, e.g. ACE or NH2) |
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extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|' |