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(-) Description

Title :  CRYSTAL STRUCTURE OF E126Q MUTANT OF GENOMICALLY ENCODED FOSFOMYCIN RESISTANCE PROTEIN, FOSX, FROM LISTERIA MONOCYTOGENES COMPLEXED WITH MN(II) AND 1S,2S-DIHYDROXYPROPYLPHOSPHONIC ACID
 
Authors :  K. L. Fillgrove, S. Pakhomova, M. Schaab, M. E. Newcomer, R. N. Armstron
Date :  20 Mar 07  (Deposition) - 17 Jul 07  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.40
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Biol. Unit 3:  E,F  (1x)
Biol. Unit 4:  A (1x),B (1x),C (1x),D (1x),E (1x),F (1x)
Keywords :  Fosfomycin Resistance Protein, Mn Binding, Antibiotic Resistance, Metal Binding Protein, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. L. Fillgrove, S. Pakhomova, M. R. Schaab, M. E. Newcomer, R. N. Armstrong
Structure And Mechanism Of The Genomically Encoded Fosfomycin Resistance Protein, Fosx, From Listeria Monocytogenes.
Biochemistry V. 46 8110 2007
PubMed-ID: 17567049  |  Reference-DOI: 10.1021/BI700625P

(-) Compounds

Molecule 1 - GLYOXALASE FAMILY PROTEIN
    Chains: A, B, C, D, E, F
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET20B(+)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Mutation: YES
    Organism Scientific: LISTERIA MONOCYTOGENES
    Organism Taxid: 169963
    Strain: EGD-E

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): AB    
Biological Unit 2 (1x):   CD  
Biological Unit 3 (1x):     EF
Biological Unit 4 (1x): A (1x)B (1x)C (1x)D (1x)E (1x)F (1x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 12)

Asymmetric Unit (2, 12)
No.NameCountTypeFull Name
1GG66Ligand/Ion[(1S,2S)-1,2-DIHYDROXYPROPYL]PHOSPHONIC ACID
2MN6Ligand/IonMANGANESE (II) ION
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1GG62Ligand/Ion[(1S,2S)-1,2-DIHYDROXYPROPYL]PHOSPHONIC ACID
2MN-1Ligand/IonMANGANESE (II) ION
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
1GG62Ligand/Ion[(1S,2S)-1,2-DIHYDROXYPROPYL]PHOSPHONIC ACID
2MN-1Ligand/IonMANGANESE (II) ION
Biological Unit 3 (1, 2)
No.NameCountTypeFull Name
1GG62Ligand/Ion[(1S,2S)-1,2-DIHYDROXYPROPYL]PHOSPHONIC ACID
2MN-1Ligand/IonMANGANESE (II) ION
Biological Unit 4 (1, 2)
No.NameCountTypeFull Name
1GG62Ligand/Ion[(1S,2S)-1,2-DIHYDROXYPROPYL]PHOSPHONIC ACID
2MN-1Ligand/IonMANGANESE (II) ION

(-) Sites  (12, 12)

Asymmetric Unit (12, 12)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHIS A:7 , THR A:9 , HIS B:69 , TYR B:108 , GLU B:118 , GG6 B:1002BINDING SITE FOR RESIDUE MN B 1001
02AC2SOFTWAREHIS A:69 , TYR A:108 , GLU A:118 , GG6 A:2002 , HIS B:7BINDING SITE FOR RESIDUE MN A 2001
03AC3SOFTWAREHIS C:7 , HIS D:69 , TYR D:108 , GLU D:118 , GG6 D:3002BINDING SITE FOR RESIDUE MN D 3001
04AC4SOFTWAREHIS C:69 , TYR C:108 , GLU C:118 , GG6 C:4002 , HIS D:7BINDING SITE FOR RESIDUE MN C 4001
05AC5SOFTWAREHIS E:7 , HIS F:69 , TYR F:108 , GLU F:118 , GG6 F:5002BINDING SITE FOR RESIDUE MN F 5001
06AC6SOFTWAREHIS E:69 , TYR E:108 , GLU E:118 , GG6 E:6002 , HIS F:7BINDING SITE FOR RESIDUE MN E 6001
07AC7SOFTWAREHIS A:7 , THR A:9 , CYS A:55 , HIS B:69 , TYR B:108 , GLU B:118 , ARG B:127 , MN B:1001BINDING SITE FOR RESIDUE GG6 B 1002
08AC8SOFTWARETYR A:67 , HIS A:69 , GLU A:103 , TYR A:108 , GLU A:118 , ARG A:127 , MN A:2001 , HIS B:7 , THR B:9 , CYS B:55 , MET B:57BINDING SITE FOR RESIDUE GG6 A 2002
09AC9SOFTWAREHIS C:7 , THR C:9 , TYR D:67 , HIS D:69 , TYR D:108 , GLU D:118 , ARG D:127 , MN D:3001BINDING SITE FOR RESIDUE GG6 D 3002
10BC1SOFTWARETYR C:67 , HIS C:69 , TYR C:108 , GLU C:118 , ARG C:127 , MN C:4001 , HIS D:7 , THR D:9BINDING SITE FOR RESIDUE GG6 C 4002
11BC2SOFTWAREHIS E:7 , THR E:9 , CYS E:55 , TYR F:67 , HIS F:69 , ARG F:97 , GLU F:103 , TYR F:108 , GLU F:118 , MN F:5001BINDING SITE FOR RESIDUE GG6 F 5002
12BC3SOFTWARETYR E:67 , HIS E:69 , ARG E:97 , GLU E:103 , TYR E:108 , GLU E:118 , ARG E:127 , MN E:6001 , HIS F:7 , THR F:9 , GLU F:44 , CYS F:55BINDING SITE FOR RESIDUE GG6 E 6002

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2P7Q)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2P7Q)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2P7Q)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2P7Q)

(-) Exons   (0, 0)

(no "Exon" information available for 2P7Q)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:130
                                                                                                                                                                  
               SCOP domains d2p7qa_ A: automated matches                                                                                                       SCOP domains
               CATH domains 2p7qA00 A:1-130 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1                                                                    CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeeee.hhhhhhhhhhhhhh.eeeee.hhh......eeeeee..eeeeeee..........eeeee.hhhhhhhhhhhhhh.................eeeee.....eeeee...hhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2p7q A   1 MISGLSHITLIVKDLNKTTAFLQNIFNAEEIYSSGDKTFSLSKEKFFLIAGLWICIMEGDSLQERTYNHIAFQIQSEEVDEYTERIKALGVEMKPERPRVQGEGRSIYFYDFDNHLFELHAGTLEQRLKR 130
                                    10        20        30        40        50        60        70        80        90       100       110       120       130


Chain B from PDB  Type:PROTEIN  Length:122
                                                                                                                                                          
               SCOP domains d2p7qb_ B: automated matches                                                                                               SCOP domains
               CATH domains 2p7qB00 B:1-129 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1                                                            CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeeee.hhhhhhhhhhhhhh.eeeeee.........eeeeee..eeeeeee..........eeeeeehhhhhhhhhhhhhh..........eeeee.....eeeeee.hhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------- Transcript
                 2p7q B   1 MISGLSHITLIVKDLNKTTAFLQNIFNAEEIYSSGDKTFSLSKEKFFLIAGLWICIMEGDSLQERTYNHIAFQIQSEEVDEYTERIKALGVEMKPEGRSIYFYDFDNHLFELHAGTLEQRLK 129
                                    10        20        30        40        50        60        70        80        90    || 107       117       127  
                                                                                                                         95|                          
                                                                                                                         103                          


Chain C from PDB  Type:PROTEIN  Length:126
                                                                                                                                                              
               SCOP domains d2p7qc_ C: automated matches                                                                                                   SCOP domains
               CATH domains 2p7qC00 C:1-129 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1                                                                CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeeeeeee.hhhhhhhhhhhhhh.eeeeeeeehhhheeeeeeeee..eeeeeee..........eeeee.hhhhhhhhhhhhhhhh..ee........eeeee.....eeeee...hhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2p7q C   1 MISGLSHITLIVKDLNKTTAFLQNIFNAEEIYSSGDKTFSLSKEKFFLIAGLWICIMEGDSLQERTYNHIAFQIQSEEVDEYTERIKALGVEMKPERPRVGRSIYFYDFDNHLFELHAGTLEQRLK 129
                                    10        20        30        40        50        60        70        80        90       100|      113       123      
                                                                                                                             100|                         
                                                                                                                              104                         


Chain D from PDB  Type:PROTEIN  Length:126
                                                                                                                                                              
               SCOP domains d2p7qd_ D: automated matches                                                                                                   SCOP domains
               CATH domains 2p7qD00 D:1-132 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1                                                                CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeeeeeee.hhhhhhhhhhhhhh.eeeee....eeeeee..eeeeeee..........eeeeeehhhhhhhhhhhhhh.................eeeee.....eeeeee.hhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2p7q D   1 MISGLSHITLIVKDLNKTTAFLQNIFNAEEIYSSGSKEKFFLIAGLWICIMEGDSLQERTYNHIAFQIQSEEVDEYTERIKALGVEMKPERPRVQGEGRSIYFYDFDNHLFELHAGTLEQRLKRYH 132
                                    10        20        30    ||  46        56        66        76        86        96       106       116       126      
                                                             35|                                                                                          
                                                              42                                                                                          


Chain E from PDB  Type:PROTEIN  Length:131
                                                                                                                                                                   
               SCOP domains d2p7qe_ E: automated matches                                                                                                        SCOP domains
               CATH domains 2p7qE00 E:1-131 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1                                                                     CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeeee.hhhhhhhhhhhhhh.eeeeeeeehhhheeeeeeeee..eeeeeee..........eeeee.hhhhhhhhhhhhhhhh...............eeeee.....eeeee..hhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2p7q E   1 MISGLSHITLIVKDLNKTTAFLQNIFNAEEIYSSGDKTFSLSKEKFFLIAGLWICIMEGDSLQERTYNHIAFQIQSEEVDEYTERIKALGVEMKPERPRVQGEGRSIYFYDFDNHLFELHAGTLEQRLKRY 131
                                    10        20        30        40        50        60        70        80        90       100       110       120       130 


Chain F from PDB  Type:PROTEIN  Length:131
                                                                                                                                                                   
               SCOP domains d2p7qf_ F: automated matches                                                                                                        SCOP domains
               CATH domains 2p7qF00 F:1-131 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1                                                                     CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeeee.hhhhhhhhhhhhhh.eeeeeeee....eeeeeeeee..eeeeeee..........eeeee....hhhhhhhhhhhh...ee..........eeeeee.....eeeeee.hhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2p7q F   1 MISGLSHITLIVKDLNKTTAFLQNIFNAEEIYSSGDKTFSLSKEKFFLIAGLWICIMEGDSLQERTYNHIAFQIQSEEVDEYTERIKALGVEMKPERPRVQGEGRSIYFYDFDNHLFELHAGTLEQRLKRY 131
                                    10        20        30        40        50        60        70        80        90       100       110       120       130
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 6)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (1, 6)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2P7Q)

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Asymmetric Unit(hide GO term definitions)
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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(-) Related Entries Specified in the PDB File

2p7k CRYSTAL STRUCTURE OF GENOMICALLY ENCODED FOSFOMYCIN RESISTANCE PROTEIN, FOSX, FROM LISTERIA MONOCYTOGENES (HEXAGONAL FORM)
2p7l CRYSTAL STRUCTURE OF GENOMICALLY ENCODED FOSFOMYCIN RESISTANCE PROTEIN, FOSX, FROM LISTERIA MONOCYTOGENES (MONOCLINIC FORM GROWN AT PH 5.75)
2p7m CRYSTAL STRUCTURE OF GENOMICALLY ENCODED FOSFOMYCIN RESISTANCE PROTEIN, FOSX, FROM LISTERIA MONOCYTOGENES (MONOCLINIC FORM GROWN AT PH 6.5)
2p7o CRYSTAL STRUCTURE OF GENOMICALLY ENCODED FOSFOMYCIN RESISTANCE PROTEIN, FOSX, FROM LISTERIA MONOCYTOGENES (TETRAGONAL FORM)
2p7p CRYSTAL STRUCTURE OF GENOMICALLY ENCODED FOSFOMYCIN RESISTANCE PROTEIN, FOSX, FROM LISTERIA MONOCYTOGENES COMPLEXED WITH MN(II) AND SULFATE ION