2P7O - JenaLib

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Title :   CRYSTAL STRUCTURE OF GENOMICALLY ENCODED FOSFOMYCIN RESISTANCE PROTEIN, FOSX, FROM LISTERIA MONOCYTOGENES (TETRAGONAL FORM)

Authors :   K. L. Fillgrove, S. Pakhomova, M. Schaab, M. E. Newcomer, R. N. Armstron

Date :   20 Mar 07 (Deposition) - 17 Jul 07 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.44

Chains :   Asym./Biol. Unit : A,B

Keywords :   Fosfomycin Resistance Protein, Mn Binding, Antibiotic Resistance, Metal Binding Protein, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   K. L. Fillgrove, S. Pakhomova, M. R. Schaab, M. E. Newcomer, R. N. Armstrong
Structure And Mechanism Of The Genomically Encoded Fosfomycin Resistance Protein, Fosx, From Listeria Monocytogenes.
Biochemistry V. 46 8110 2007
PubMed-ID: 17567049 | Reference-DOI: 10.1021/BI700625P

Molecule 1 - GLYOXALASE FAMILY PROTEIN
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET20B(+)
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Organism Scientific	:	LISTERIA MONOCYTOGENES
	Organism Taxid	:	169963
	Strain	:	EGD-E

		1	2
Asymmetric/Biological Unit	:	A	B

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (1, 2)

No.	Name	Count	Type	Full Name
1	MN	2	Ligand/Ion	MANGANESE (II) ION

Asymmetric Unit (2, 2)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	HIS A:7 , HIS B:69 , TYR B:108 , GLU B:118 , GLU B:126 , HOH B:7001	BINDING SITE FOR RESIDUE MN B 4000
2	AC2	SOFTWARE	HIS A:69 , TYR A:108 , GLU A:118 , GLU A:126 , HOH A:7005 , HIS B:7	BINDING SITE FOR RESIDUE MN A 6000

(no "SS Bond" information available for 2P7O)

Asymmetric/Biological Unit

No.	Residues
1	Met A:1	-	Ile A:2

(no "SAP(SNP)/Variant" information available for 2P7O)

Asymmetric/Biological Unit (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	VOC	PS51819	Vicinal oxygen chelate (VOC) domain profile.	FOSX_LISMO	4-122	2	A:4-122 B:4-122

(no "Exon" information available for 2P7O)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:127
 aligned with FOSX_LISMO | Q8Y6I2 from UniProtKB/Swiss-Prot  Length:133

    Alignment length:132
                                    10        20        30        40        50        60        70        80        90       100       110       120       130  
           FOSX_LISMO     1 MISGLSHITLIVKDLNKTTTFLREIFNAEEIYSSGDQTFSLSKEKFFLIAGLWICIMEGDSLQEQTYNHIAFRIQSEEVDEYIERIKSLGVEIKPERPRVEGEGRSIYFYDFDNHLFELHAGTLEERLKRYH 132
               SCOP domains d2p7oa_ A: automated matches                                                                                                         SCOP domains
               CATH domains 2p7oA00 A:1-132 2,3-Dihydroxybip     henyl 1,2-Dioxygenase, domain 1                                                                 CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeeeeeee.hhhhhhhhhhhhhh.ee..-----......eeeeee..eeeeeee..........eeeee.hhhhhhhhhhhhhhhh..ee...........eeeee.....eeeee......hhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ---VOC  PDB: A:4-122 UniProt: 4-122                                                                                       ---------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2p7o A   1 MISGLSHITLIVKDLNKTTAFLQNIFNAEEIY-----TFSLSKEKFFLIAGLWICIMEGDSLQERTYNHIAFQIQSEEVDEYTERIKALGVEMKPERPRVQGEGRSIYFYDFDNHLFELHAGTLEERLKRYH 132
                                    10        20        30 |     |40        50        60        70        80        90       100       110       120       130  
                                                          32    38

Chain B from PDB  Type:PROTEIN  Length:126
 aligned with FOSX_LISMO | Q8Y6I2 from UniProtKB/Swiss-Prot  Length:133

    Alignment length:131
                                    10        20        30        40        50        60        70        80        90       100       110       120       130 
           FOSX_LISMO     1 MISGLSHITLIVKDLNKTTTFLREIFNAEEIYSSGDQTFSLSKEKFFLIAGLWICIMEGDSLQEQTYNHIAFRIQSEEVDEYIERIKSLGVEIKPERPRVEGEGRSIYFYDFDNHLFELHAGTLEERLKRY 131
               SCOP domains d2p7ob_ B: automated matches                                                                                                        SCOP domains
               CATH domains 2p7oB00 B:1-131 2,3-Dihydroxybip     henyl 1,2-Dioxygenase, domain 1                                                                CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeeee.hhhhhhhhhhhhhh.eee.-----......eeeeee..eeeeeee..........eeeee.hhhhhhhhhhhhhhh................eeeee.....eeeee......hhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---VOC  PDB: B:4-122 UniProt: 4-122                                                                                       --------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2p7o B   1 MISGLSHITLIVKDLNKTTAFLQNIFNAEEIY-----TFSLSKEKFFLIAGLWICIMEGDSLQERTYNHIAFQIQSEEVDEYTERIKALGVEMKPERPRVQGEGRSIYFYDFDNHLFELHAGTLEERLKRY 131
                                    10        20        30 |     |40        50        60        70        80        90       100       110       120       130 
                                                          32    38

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: Roll (3276)

Topology: 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 (113)

Homologous Superfamily: 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 (106)

Listeria monocytogenes egd-e. Organism_taxid: 169963. Strain: egd-e. (6)

1a	2p7oA00	A:1-132
1b	2p7oB00	B:1-131

(no "Pfam Domain" information available for 2P7O)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B (FOSX_LISMO | Q8Y6I2)

molecular function
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
biological process
	GO:0046677	response to antibiotic	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an antibiotic stimulus. An antibiotic is a chemical substance produced by a microorganism which has the capacity to inhibit the growth of or to kill other microorganisms.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

Asymmetric/Biological Unit
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	Cis Peptide Bonds
		Met A:1 - Ile A:2	[ RasMol ]

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	2p7o
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UniProtKB/Swiss-Prot
	FOSX_LISMO \| Q8Y6I2	:	2p7k 2p7l 2p7m 2p7p

2p7k	CRYSTAL STRUCTURE OF GENOMICALLY ENCODED FOSFOMYCIN RESISTANCE PROTEIN, FOSX, FROM LISTERIA MONOCYTOGENES (HEXAGONAL FORM)
2p7l	CRYSTAL STRUCTURE OF GENOMICALLY ENCODED FOSFOMYCIN RESISTANCE PROTEIN, FOSX, FROM LISTERIA MONOCYTOGENES (MONOCLINIC FORM GROWN AT PH 5.75)
2p7m	CRYSTAL STRUCTURE OF GENOMICALLY ENCODED FOSFOMYCIN RESISTANCE PROTEIN, FOSX, FROM LISTERIA MONOCYTOGENES (MONOCLINIC FORM GROWN AT PH 6.5)
2p7p	CRYSTAL STRUCTURE OF GENOMICALLY ENCODED FOSFOMYCIN RESISTANCE PROTEIN, FOSX, FROM LISTERIA MONOCYTOGENES COMPLEXED WITH MN(II) AND SULFATE ION
2p7q	CRYSTAL STRUCTURE OF E126Q MUTANT OF GENOMICALLY ENCODED FOSFOMYCIN RESISTANCE PROTEIN, FOSX, FROM LISTERIA MONOCYTOGENES COMPLEXED WITH MN(II) AND 1S,2S- DIHYDROXYPROPYLPHOSPHONIC ACID

Description

Compounds

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Ligands, Modified Residues, Ions (1, 2)

Sites (2, 2)

SS Bonds (0, 0)

Cis Peptide Bonds (1, 1)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 2)

Exons (0, 0)

Sequences/Alignments

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SCOP Domains (1, 2)

CATH Domains (1, 2)

Pfam Domains (0, 0)

Gene Ontology (3, 3)

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