PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
2P7Q
Asym. Unit
Info
Asym.Unit (137 KB)
Biol.Unit 1 (46 KB)
Biol.Unit 2 (46 KB)
Biol.Unit 3 (47 KB)
Biol.Unit 4 (131 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURE OF E126Q MUTANT OF GENOMICALLY ENCODED FOSFOMYCIN RESISTANCE PROTEIN, FOSX, FROM LISTERIA MONOCYTOGENES COMPLEXED WITH MN(II) AND 1S,2S-DIHYDROXYPROPYLPHOSPHONIC ACID
Authors
:
K. L. Fillgrove, S. Pakhomova, M. Schaab, M. E. Newcomer, R. N. Armstron
Date
:
20 Mar 07 (Deposition) - 17 Jul 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Biol. Unit 4: A,B,C,D,E,F (1x)
Keywords
:
Fosfomycin Resistance Protein, Mn Binding, Antibiotic Resistance, Metal Binding Protein, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. L. Fillgrove, S. Pakhomova, M. R. Schaab, M. E. Newcomer, R. N. Armstrong
Structure And Mechanism Of The Genomically Encoded Fosfomycin Resistance Protein, Fosx, From Listeria Monocytogenes.
Biochemistry V. 46 8110 2007
[
close entry info
]
Hetero Components
(2, 12)
Info
All Hetero Components
1a: [(1S,2S)-1,2-DIHYDROXYPROPYL]PHOSP... (GG6a)
1b: [(1S,2S)-1,2-DIHYDROXYPROPYL]PHOSP... (GG6b)
1c: [(1S,2S)-1,2-DIHYDROXYPROPYL]PHOSP... (GG6c)
1d: [(1S,2S)-1,2-DIHYDROXYPROPYL]PHOSP... (GG6d)
1e: [(1S,2S)-1,2-DIHYDROXYPROPYL]PHOSP... (GG6e)
1f: [(1S,2S)-1,2-DIHYDROXYPROPYL]PHOSP... (GG6f)
2a: MANGANESE (II) ION (MNa)
2b: MANGANESE (II) ION (MNb)
2c: MANGANESE (II) ION (MNc)
2d: MANGANESE (II) ION (MNd)
2e: MANGANESE (II) ION (MNe)
2f: MANGANESE (II) ION (MNf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GG6
6
Ligand/Ion
[(1S,2S)-1,2-DIHYDROXYPROPYL]PHOSPHONIC ACID
2
MN
6
Ligand/Ion
MANGANESE (II) ION
[
close Hetero Component info
]
Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:7 , THR A:9 , HIS B:69 , TYR B:108 , GLU B:118 , GG6 B:1002
BINDING SITE FOR RESIDUE MN B 1001
02
AC2
SOFTWARE
HIS A:69 , TYR A:108 , GLU A:118 , GG6 A:2002 , HIS B:7
BINDING SITE FOR RESIDUE MN A 2001
03
AC3
SOFTWARE
HIS C:7 , HIS D:69 , TYR D:108 , GLU D:118 , GG6 D:3002
BINDING SITE FOR RESIDUE MN D 3001
04
AC4
SOFTWARE
HIS C:69 , TYR C:108 , GLU C:118 , GG6 C:4002 , HIS D:7
BINDING SITE FOR RESIDUE MN C 4001
05
AC5
SOFTWARE
HIS E:7 , HIS F:69 , TYR F:108 , GLU F:118 , GG6 F:5002
BINDING SITE FOR RESIDUE MN F 5001
06
AC6
SOFTWARE
HIS E:69 , TYR E:108 , GLU E:118 , GG6 E:6002 , HIS F:7
BINDING SITE FOR RESIDUE MN E 6001
07
AC7
SOFTWARE
HIS A:7 , THR A:9 , CYS A:55 , HIS B:69 , TYR B:108 , GLU B:118 , ARG B:127 , MN B:1001
BINDING SITE FOR RESIDUE GG6 B 1002
08
AC8
SOFTWARE
TYR A:67 , HIS A:69 , GLU A:103 , TYR A:108 , GLU A:118 , ARG A:127 , MN A:2001 , HIS B:7 , THR B:9 , CYS B:55 , MET B:57
BINDING SITE FOR RESIDUE GG6 A 2002
09
AC9
SOFTWARE
HIS C:7 , THR C:9 , TYR D:67 , HIS D:69 , TYR D:108 , GLU D:118 , ARG D:127 , MN D:3001
BINDING SITE FOR RESIDUE GG6 D 3002
10
BC1
SOFTWARE
TYR C:67 , HIS C:69 , TYR C:108 , GLU C:118 , ARG C:127 , MN C:4001 , HIS D:7 , THR D:9
BINDING SITE FOR RESIDUE GG6 C 4002
11
BC2
SOFTWARE
HIS E:7 , THR E:9 , CYS E:55 , TYR F:67 , HIS F:69 , ARG F:97 , GLU F:103 , TYR F:108 , GLU F:118 , MN F:5001
BINDING SITE FOR RESIDUE GG6 F 5002
12
BC3
SOFTWARE
TYR E:67 , HIS E:69 , ARG E:97 , GLU E:103 , TYR E:108 , GLU E:118 , ARG E:127 , MN E:6001 , HIS F:7 , THR F:9 , GLU F:44 , CYS F:55
BINDING SITE FOR RESIDUE GG6 E 6002
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d2p7qa_ (A:)
1b: SCOP_d2p7qb_ (B:)
1c: SCOP_d2p7qc_ (C:)
1d: SCOP_d2p7qd_ (D:)
1e: SCOP_d2p7qe_ (E:)
1f: SCOP_d2p7qf_ (F:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
(136)
Superfamily
:
Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
(136)
Family
:
Antibiotic resistance proteins
(31)
Protein domain
:
automated matches
(10)
Listeria monocytogenes [TaxId: 169963]
(5)
1a
d2p7qa_
A:
1b
d2p7qb_
B:
1c
d2p7qc_
C:
1d
d2p7qd_
D:
1e
d2p7qe_
E:
1f
d2p7qf_
F:
[
close SCOP info
]
CATH Domains
(1, 6)
Info
all CATH domains
1a: CATH_2p7qE00 (E:1-131)
1b: CATH_2p7qF00 (F:1-131)
1c: CATH_2p7qA00 (A:1-130)
1d: CATH_2p7qC00 (C:1-129)
1e: CATH_2p7qD00 (D:1-132)
1f: CATH_2p7qB00 (B:1-129)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Roll
(3276)
Topology
:
2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1
(113)
Homologous Superfamily
:
2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1
(106)
Listeria monocytogenes egd-e. Organism_taxid: 169963. Strain: egd-e.
(6)
1a
2p7qE00
E:1-131
1b
2p7qF00
F:1-131
1c
2p7qA00
A:1-130
1d
2p7qC00
C:1-129
1e
2p7qD00
D:1-132
1f
2p7qB00
B:1-129
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Chain E
Chain F
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (137 KB)
Header - Asym.Unit
Biol.Unit 1 (46 KB)
Header - Biol.Unit 1
Biol.Unit 2 (46 KB)
Header - Biol.Unit 2
Biol.Unit 3 (47 KB)
Header - Biol.Unit 3
Biol.Unit 4 (131 KB)
Header - Biol.Unit 4
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
2P7Q
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
