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2P7Q
Biol. Unit 4
Info
Asym.Unit (137 KB)
Biol.Unit 1 (46 KB)
Biol.Unit 2 (46 KB)
Biol.Unit 3 (47 KB)
Biol.Unit 4 (131 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF E126Q MUTANT OF GENOMICALLY ENCODED FOSFOMYCIN RESISTANCE PROTEIN, FOSX, FROM LISTERIA MONOCYTOGENES COMPLEXED WITH MN(II) AND 1S,2S-DIHYDROXYPROPYLPHOSPHONIC ACID
Authors
:
K. L. Fillgrove, S. Pakhomova, M. Schaab, M. E. Newcomer, R. N. Armstron
Date
:
20 Mar 07 (Deposition) - 17 Jul 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Biol. Unit 4: A,B,C,D,E,F (1x)
Keywords
:
Fosfomycin Resistance Protein, Mn Binding, Antibiotic Resistance, Metal Binding Protein, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. L. Fillgrove, S. Pakhomova, M. R. Schaab, M. E. Newcomer, R. N. Armstrong
Structure And Mechanism Of The Genomically Encoded Fosfomycin Resistance Protein, Fosx, From Listeria Monocytogenes.
Biochemistry V. 46 8110 2007
[
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: [(1S,2S)-1,2-DIHYDROXYPROPYL]PHOSP... (GG6a)
1b: [(1S,2S)-1,2-DIHYDROXYPROPYL]PHOSP... (GG6b)
1c: [(1S,2S)-1,2-DIHYDROXYPROPYL]PHOSP... (GG6c)
1d: [(1S,2S)-1,2-DIHYDROXYPROPYL]PHOSP... (GG6d)
1e: [(1S,2S)-1,2-DIHYDROXYPROPYL]PHOSP... (GG6e)
1f: [(1S,2S)-1,2-DIHYDROXYPROPYL]PHOSP... (GG6f)
2a: MANGANESE (II) ION (MNa)
2b: MANGANESE (II) ION (MNb)
2c: MANGANESE (II) ION (MNc)
2d: MANGANESE (II) ION (MNd)
2e: MANGANESE (II) ION (MNe)
2f: MANGANESE (II) ION (MNf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GG6
2
Ligand/Ion
[(1S,2S)-1,2-DIHYDROXYPROPYL]PHOSPHONIC ACID
2
MN
-1
Ligand/Ion
MANGANESE (II) ION
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:7 , THR A:9 , HIS B:69 , TYR B:108 , GLU B:118 , GG6 B:1002
BINDING SITE FOR RESIDUE MN B 1001
02
AC2
SOFTWARE
HIS A:69 , TYR A:108 , GLU A:118 , GG6 A:2002 , HIS B:7
BINDING SITE FOR RESIDUE MN A 2001
03
AC3
SOFTWARE
HIS C:7 , HIS D:69 , TYR D:108 , GLU D:118 , GG6 D:3002
BINDING SITE FOR RESIDUE MN D 3001
04
AC4
SOFTWARE
HIS C:69 , TYR C:108 , GLU C:118 , GG6 C:4002 , HIS D:7
BINDING SITE FOR RESIDUE MN C 4001
05
AC5
SOFTWARE
HIS E:7 , HIS F:69 , TYR F:108 , GLU F:118 , GG6 F:5002
BINDING SITE FOR RESIDUE MN F 5001
06
AC6
SOFTWARE
HIS E:69 , TYR E:108 , GLU E:118 , GG6 E:6002 , HIS F:7
BINDING SITE FOR RESIDUE MN E 6001
07
AC7
SOFTWARE
HIS A:7 , THR A:9 , CYS A:55 , HIS B:69 , TYR B:108 , GLU B:118 , ARG B:127 , MN B:1001
BINDING SITE FOR RESIDUE GG6 B 1002
08
AC8
SOFTWARE
TYR A:67 , HIS A:69 , GLU A:103 , TYR A:108 , GLU A:118 , ARG A:127 , MN A:2001 , HIS B:7 , THR B:9 , CYS B:55 , MET B:57
BINDING SITE FOR RESIDUE GG6 A 2002
09
AC9
SOFTWARE
HIS C:7 , THR C:9 , TYR D:67 , HIS D:69 , TYR D:108 , GLU D:118 , ARG D:127 , MN D:3001
BINDING SITE FOR RESIDUE GG6 D 3002
10
BC1
SOFTWARE
TYR C:67 , HIS C:69 , TYR C:108 , GLU C:118 , ARG C:127 , MN C:4001 , HIS D:7 , THR D:9
BINDING SITE FOR RESIDUE GG6 C 4002
11
BC2
SOFTWARE
HIS E:7 , THR E:9 , CYS E:55 , TYR F:67 , HIS F:69 , ARG F:97 , GLU F:103 , TYR F:108 , GLU F:118 , MN F:5001
BINDING SITE FOR RESIDUE GG6 F 5002
12
BC3
SOFTWARE
TYR E:67 , HIS E:69 , ARG E:97 , GLU E:103 , TYR E:108 , GLU E:118 , ARG E:127 , MN E:6001 , HIS F:7 , THR F:9 , GLU F:44 , CYS F:55
BINDING SITE FOR RESIDUE GG6 E 6002
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d2p7qa_ (A:)
1b: SCOP_d2p7qb_ (B:)
1c: SCOP_d2p7qc_ (C:)
1d: SCOP_d2p7qd_ (D:)
1e: SCOP_d2p7qe_ (E:)
1f: SCOP_d2p7qf_ (F:)
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
(136)
Superfamily
:
Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
(136)
Family
:
Antibiotic resistance proteins
(31)
Protein domain
:
automated matches
(10)
Listeria monocytogenes [TaxId: 169963]
(5)
1a
d2p7qa_
A:
1b
d2p7qb_
B:
1c
d2p7qc_
C:
1d
d2p7qd_
D:
1e
d2p7qe_
E:
1f
d2p7qf_
F:
[
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CATH Domains
(1, 6)
Info
all CATH domains
1a: CATH_2p7qE00 (E:1-131)
1b: CATH_2p7qF00 (F:1-131)
1c: CATH_2p7qA00 (A:1-130)
1d: CATH_2p7qC00 (C:1-129)
1e: CATH_2p7qD00 (D:1-132)
1f: CATH_2p7qB00 (B:1-129)
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Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Roll
(3276)
Topology
:
2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1
(113)
Homologous Superfamily
:
2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1
(106)
Listeria monocytogenes egd-e. Organism_taxid: 169963. Strain: egd-e.
(6)
1a
2p7qE00
E:1-131
1b
2p7qF00
F:1-131
1c
2p7qA00
A:1-130
1d
2p7qC00
C:1-129
1e
2p7qD00
D:1-132
1f
2p7qB00
B:1-129
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Pfam Domains
(0, 0)
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Asym.Unit (137 KB)
Header - Asym.Unit
Biol.Unit 1 (46 KB)
Header - Biol.Unit 1
Biol.Unit 2 (46 KB)
Header - Biol.Unit 2
Biol.Unit 3 (47 KB)
Header - Biol.Unit 3
Biol.Unit 4 (131 KB)
Header - Biol.Unit 4
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