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(-) Description

Title :  C-TERMINAL DOMAIN OF INFLUENZA A VIRUS POLYMERASE PB2 SUBUNIT IN COMPLEX WITH HUMAN IMPORTIN ALPHA5
 
Authors :  F. Tarendeau, D. Guilligay, P. Mas, S. Boulo, F. Baudin, R. W. H. Ruigrok D. J. Hart, S. Cusack
Date :  11 Jan 07  (Deposition) - 27 Feb 07  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym./Biol. Unit :  A,B,D,E
Keywords :  Transport, Pb2 Subunit, Nuclear Protein, Protein Transport, Armadillo Repeats, Influenza A Virus Rna-Dependent Rna Polymerase, Bipartite Nuclear Localisation Signal, Nuclear Import Adapter, Human Importin Alpha5, Host-Virus Interaction (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  F. Tarendeau, J. Boudet, D. Guilligay, P. Mas, C. Bougault, S. Boulo, F. Baudin, R. W. H. Ruigrok, N. Daigle, J. Ellenberg, S. Cusack, J. -P. Simorre, D. J. Hart
Structure And Nuclear Import Function Of The C- Terminal Domain Of Influenza Virus Polymerase Pb2 Subunit
Nat. Struct. Mol. Biol. V. 14 229 2007
PubMed-ID: 17310249  |  Reference-DOI: 10.1038/NSMB1212

(-) Compounds

Molecule 1 - IMPORTIN ALPHA-1 SUBUNIT
    ChainsA, B
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System StrainBL21(DE3)
    Expression System Taxid469008
    Expression System VectorPPROEX HTB
    FragmentRESIDUES 66-512
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymKARYOPHERIN ALPHA-1 SUBUNIT, SRP1-BETA, RAG COHORT PROTEIN 2, NUCLEOPROTEIN INTERACTOR 1, NPI-1, IMPORTIN ALPHA 5
 
Molecule 2 - POLYMERASE BASIC PROTEIN 2
    ChainsD, E
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System StrainBL21
    Expression System Taxid511693
    Expression System VectorPTRIEX DERIVATIVE
    FragmentC-TERMINAL DOMAIN, RESIDUES 678-759
    Organism ScientificINFLUENZA A VIRUS
    Organism Taxid11320
    StrainA/VICTORIA/3/75 (H3N2)
    SynonymRNA-DIRECTED RNA POLYMERASE SUBUNIT P3, INFLUENZA A VIRUS POLYMERASE PB2 SUBUNIT

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit ABDE

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2JDQ)

(-) Sites  (0, 0)

(no "Site" information available for 2JDQ)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2JDQ)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Ser A:244 -Pro A:245
2Ser B:244 -Pro B:245

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2JDQ)

(-) PROSITE Motifs  (1, 8)

Asymmetric/Biological Unit (1, 8)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ARM_REPEATPS50176 Armadillo/plakoglobin ARM repeat profile.IMA5_HUMAN169-197
 
126-169
 
211-239
 
338-369
 
  8A:169-197
B:169-197
A:126-169
B:126-169
A:211-239
B:211-239
A:338-369
B:338-369

(-) Exons   (11, 22)

Asymmetric/Biological Unit (11, 22)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1dENST000003443371dENSE00001856631chr3:122233775-122233604172IMA5_HUMAN-00--
1.3bENST000003443373bENSE00001370231chr3:122215417-122215284134IMA5_HUMAN1-43430--
1.4ENST000003443374ENSE00001078786chr3:122186276-122186169108IMA5_HUMAN44-79360--
1.6ENST000003443376ENSE00001078787chr3:122182888-122182789100IMA5_HUMAN80-113342A:84-113
B:84-113
30
30
1.7ENST000003443377ENSE00001801605chr3:122180165-12218007195IMA5_HUMAN113-144322A:113-144
B:113-144
32
32
1.10bENST0000034433710bENSE00001150122chr3:122172848-122172717132IMA5_HUMAN145-188442A:145-188
B:145-188
44
44
1.11cENST0000034433711cENSE00001150115chr3:122170911-12217082389IMA5_HUMAN189-218302A:189-218
B:189-218
30
30
1.12bENST0000034433712bENSE00000776600chr3:122170480-122170381100IMA5_HUMAN218-251342A:218-251
B:218-251
34
34
1.13ENST0000034433713ENSE00000776598chr3:122168584-122168421164IMA5_HUMAN252-306552A:252-306
B:252-306
55
55
1.14bENST0000034433714bENSE00001650547chr3:122160963-12216088579IMA5_HUMAN306-332272A:306-332
B:306-332
27
27
1.15ENST0000034433715ENSE00000776592chr3:122156142-122156017126IMA5_HUMAN333-374422A:333-374
B:333-374
42
42
1.16ENST0000034433716ENSE00000776589chr3:122152635-122152508128IMA5_HUMAN375-417432A:375-417
B:375-417
43
43
1.17ENST0000034433717ENSE00000776587chr3:122146563-122146385179IMA5_HUMAN417-477612A:417-477
B:417-477
61
61
1.18eENST0000034433718eENSE00001154752chr3:122146019-1221407965224IMA5_HUMAN477-538622A:477-507
B:477-509
31
33

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:424
 aligned with IMA5_HUMAN | P52294 from UniProtKB/Swiss-Prot  Length:538

    Alignment length:424
                                    93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503    
           IMA5_HUMAN    84 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGTE 507
               SCOP domains d2jdqa_ A: automated matches                                                                                                                                                                                                                                                                                                                                                                                                             SCOP domains
               CATH domains 2jdqA00 A:84-507 Leucine-rich Repeat Variant                                                                                                                                                                                                                                                                                                                                                                                             CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhh.hhhhhhhhhhhhhhhhhh....hhhhhhh..hhhhhhhhhhh...hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh.hhhhhhhhhhh.hhhhhhhhh....hhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh..hhhhhhhhhhh.hhhhhhhhh...hhhhhhhhhhhhhhhh..hhhhhhhhhh.hhhhhhhhhh...hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -------------------------------------------------------------------------------------ARM_REPEAT  PDB: A:169-197   -------------ARM_REPEAT  PDB: A:211-239   --------------------------------------------------------------------------------------------------ARM_REPEAT  PDB: A:338-369      ------------------------------------------------------------------------------------------------------------------------------------------ PROSITE (1)
                PROSITE (2) ------------------------------------------ARM_REPEAT  PDB: A:126-169 UniProt: 126-169 -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
           Transcript 1 (1) Exon 1.6  PDB: A:84-113       -------------------------------Exon 1.10b  PDB: A:145-188 UniProt: 145-188 Exon 1.11c  PDB: A:189-218    ---------------------------------Exon 1.13  PDB: A:252-306 UniProt: 252-306             --------------------------Exon 1.15  PDB: A:333-374 UniProt: 333-374Exon 1.16  PDB: A:375-417 UniProt: 375-417 -----------------------------------------------------------Exon 1.18e  PDB: A:477-507      Transcript 1 (1)
           Transcript 1 (2) -----------------------------Exon 1.7  PDB: A:113-144        -------------------------------------------------------------------------Exon 1.12b  PDB: A:218-251        ------------------------------------------------------Exon 1.14b  PDB: A:306-332 ------------------------------------------------------------------------------------Exon 1.17  PDB: A:417-477 UniProt: 417-477                   ------------------------------ Transcript 1 (2)
                 2jdq A  84 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGTE 507
                                    93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503    

Chain B from PDB  Type:PROTEIN  Length:426
 aligned with IMA5_HUMAN | P52294 from UniProtKB/Swiss-Prot  Length:538

    Alignment length:426
                                    93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503      
           IMA5_HUMAN    84 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGTEDE 509
               SCOP domains d2jdqb_ B: automated matches                                                                                                                                                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains 2jdqB00 B:84-509 Leucine-rich Repeat Variant                                                                                                                                                                                                                                                                                                                                                                                               CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhh..hhhhhhhhhhhhhhhh......hhhhhhh...hhhhhhhhh....hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh.hhhhhhhhhhh.hhhhhhhh.....hhhhhhhhhhhhhhhhh......hhhhhh.hhhhhhhhh...hhhhhhhhhhhhhhhh..hhhhhhhhhhh.hhhhhhhhhhh.hhhhhhhhhhhhhhhh..hhhhhhhhhh.hhhhhhhhhh...hhhhhhhhhhhhhhhh..hhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (1) -------------------------------------------------------------------------------------ARM_REPEAT  PDB: B:169-197   -------------ARM_REPEAT  PDB: B:211-239   --------------------------------------------------------------------------------------------------ARM_REPEAT  PDB: B:338-369      -------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (1)
                PROSITE (2) ------------------------------------------ARM_REPEAT  PDB: B:126-169 UniProt: 126-169 ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
           Transcript 1 (1) Exon 1.6  PDB: B:84-113       -------------------------------Exon 1.10b  PDB: B:145-188 UniProt: 145-188 Exon 1.11c  PDB: B:189-218    ---------------------------------Exon 1.13  PDB: B:252-306 UniProt: 252-306             --------------------------Exon 1.15  PDB: B:333-374 UniProt: 333-374Exon 1.16  PDB: B:375-417 UniProt: 375-417 -----------------------------------------------------------Exon 1.18e  PDB: B:477-509        Transcript 1 (1)
           Transcript 1 (2) -----------------------------Exon 1.7  PDB: B:113-144        -------------------------------------------------------------------------Exon 1.12b  PDB: B:218-251        ------------------------------------------------------Exon 1.14b  PDB: B:306-332 ------------------------------------------------------------------------------------Exon 1.17  PDB: B:417-477 UniProt: 417-477                   -------------------------------- Transcript 1 (2)
                 2jdq B  84 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGTEDE 509
                                    93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503      

Chain D from PDB  Type:PROTEIN  Length:63
 aligned with PB2_I75A3 | P31345 from UniProtKB/Swiss-Prot  Length:759

    Alignment length:69
                                   697       707       717       727       737       747         
            PB2_I75A3   688 SAVLRGFLILGKEDRRYGPALSINELSNLAKGEKANVLIGQGDVVLVMKRKRDSSILTDSQTATKRIRM 756
               SCOP domains d2jdqd_ D: automated matches                                          SCOP domains
               CATH domains --------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhh.eeeeee.hhhhh.....hhhhhh....eeeeeee..eeeeeee.....------......... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------- Transcript
                 2jdq D 688 SAVLRGFLILGKEDRRYGPALSINELSNLAKGEKANVLIGQGDVVLVMKRKRDS------QTATKRIRM 756
                                   697       707       717       727       737   |     -|        
                                                                               741    748        

Chain E from PDB  Type:PROTEIN  Length:65
 aligned with PB2_I75A3 | P31345 from UniProtKB/Swiss-Prot  Length:759

    Alignment length:72
                                   695       705       715       725       735       745       755  
            PB2_I75A3   686 VESAVLRGFLILGKEDRRYGPALSINELSNLAKGEKANVLIGQGDVVLVMKRKRDSSILTDSQTATKRIRMA 757
               SCOP domains d2jdqe_ E: automated matches                                             SCOP domains
               CATH domains ------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhh.eeeeee.hhhhh......hhhhh.....eeeeee..eeeeeee.....-------......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------ Transcript
                 2jdq E 686 VESAVLRGFLILGKEDRRYGPALSINELSNLAKGEKANVLIGQGDVVLVMKRKRDS-------TATKRIRMA 757
                                   695       705       715       725       735     |   -   |   755  
                                                                                 741     749        

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 4)

Asymmetric/Biological Unit

(-) CATH Domains  (1, 2)

Asymmetric/Biological Unit

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2JDQ)

(-) Gene Ontology  (33, 34)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B   (IMA5_HUMAN | P52294)
molecular function
    GO:0008139    nuclear localization sequence binding    Interacting selectively and non-covalently with a nuclear localization sequence, a specific peptide sequence that acts as a signal to localize the protein within the nucleus.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0008565    protein transporter activity    Enables the directed movement of proteins into, out of or within a cell, or between cells.
biological process
    GO:0006607    NLS-bearing protein import into nucleus    The directed movement of a protein bearing a nuclear localization signal (NLS) from the cytoplasm into the nucleus, across the nuclear membrane.
    GO:0006309    apoptotic DNA fragmentation    The cleavage of DNA during apoptosis, which usually occurs in two stages: cleavage into fragments of about 50 kbp followed by cleavage between nucleosomes to yield 200 bp fragments.
    GO:0075733    intracellular transport of virus    The directed movement of a virus, or part of a virus, within the host cell.
    GO:0019054    modulation by virus of host process    The process in which a virus effects a change in the processes and activities of its host organism.
    GO:0006606    protein import into nucleus    The directed movement of a protein from the cytoplasm to the nucleus.
    GO:0015031    protein transport    The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0000018    regulation of DNA recombination    Any process that modulates the frequency, rate or extent of DNA recombination, a DNA metabolic process in which a new genotype is formed by reassortment of genes resulting in gene combinations different from those that were present in the parents.
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
    GO:0016032    viral process    A multi-organism process in which a virus is a participant. The other participant is the host. Includes infection of a host cell, replication of the viral genome, and assembly of progeny virus particles. In some cases the viral genetic material may integrate into the host genome and only subsequently, under particular circumstances, 'complete' its life cycle.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0030425    dendrite    A neuron projection that has a short, tapering, often branched, morphology, receives and integrates signals from other neurons or from sensory stimuli, and conducts a nerve impulse towards the axon or the cell body. In most neurons, the impulse is conveyed from dendrites to axon via the cell body, but in some types of unipolar neuron, the impulse does not travel via the cell body.
    GO:0005643    nuclear pore    Any of the numerous similar discrete openings in the nuclear envelope of a eukaryotic cell, where the inner and outer nuclear membranes are joined.
    GO:0005654    nucleoplasm    That part of the nuclear content other than the chromosomes or the nucleolus.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

Chain D,E   (PB2_I75A3 | P31345)
molecular function
    GO:0003723    RNA binding    Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
    GO:0003968    RNA-directed 5'-3' RNA polymerase activity    Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1); uses an RNA template, i.e. the catalysis of RNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time.
biological process
    GO:0006370    7-methylguanosine mRNA capping    Addition of the 7-methylguanosine cap to the 5' end of a nascent messenger RNA transcript.
    GO:0075526    cap snatching    A transcription initiation process during which a nucleotide sequence between 10 and 20 nucleotides in size is cleaved from the 5' end of host mRNAs by a viral RNA-dependent polymerase. The capped leader sequence obtained is subsequently used to prime transcription on the viral genome, which ultimately leads to the synthesis of capped, translatable viral mRNAs.
    GO:0030683    evasion or tolerance by virus of host immune response    Any process, either active or passive, by which a virus avoids the effects of the host organism's immune response. The host is defined as the larger of the organisms involved in a symbiotic interaction.
    GO:0006397    mRNA processing    Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide.
    GO:0039545    suppression by virus of host MAVS activity    Any process in which a virus stops, prevents, or reduces the activity of MAVS (mitochondrial antiviral signaling protein), a signal transducer that lies downstream of the viral RNA receptors MDA-5 and RIG-I to coordinate host innate immune responses.
    GO:0039523    suppression by virus of host RNA polymerase II activity    Any process in which a virus stops, prevents, or reduces the frequency, rate or extent of host RNA polymerase II activity.
    GO:0039657    suppression by virus of host gene expression    Any process in which a virus stops, prevents, or reduces the frequency, rate or extent of gene expression in the host organism. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein. Some protein processing events may be included when they are required to form an active form of a product from an inactive precursor form.
    GO:0039503    suppression by virus of host innate immune response    Any process in which a virus stops, prevents, or reduces the frequency, rate or extent of the innate immune response of the host organism, the host's first line of defense.
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.
    GO:0016032    viral process    A multi-organism process in which a virus is a participant. The other participant is the host. Includes infection of a host cell, replication of the viral genome, and assembly of progeny virus particles. In some cases the viral genetic material may integrate into the host genome and only subsequently, under particular circumstances, 'complete' its life cycle.
    GO:0019083    viral transcription    The process by which a viral genome, or part of a viral genome, is transcribed within the host cell.
cellular component
    GO:0033650    host cell mitochondrion    A semiautonomous, self replicating organelle as found in host cells that occurs in varying numbers, shapes, and sizes in the cell cytoplasm. The host is defined as the larger of the organisms involved in a symbiotic interaction.
    GO:0042025    host cell nucleus    A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction.
    GO:0019012    virion    The complete fully infectious extracellular virus particle.

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    Ser A:244 - Pro A:245   [ RasMol ]  
    Ser B:244 - Pro B:245   [ RasMol ]  
 

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  PB2_I75A3 | P31345
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        IMA5_HUMAN | P522943tj3 4b18
        PB2_I75A3 | P313452gmo 2vqz 2vy6 2vy7 2vy8 4nce 4ncm 4p1u 4uad 4uae 4uaf

(-) Related Entries Specified in the PDB File

2gmo IDENTIFICATION BY SYSTEMATIC EXPRESSION SCREENING AND NMR STRUCTURE OF AN INDEPENDENTLY FOLDED C-TERMINAL DOMAIN OF INFLUENZA POLYMERASE SUBUNIT PB2