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2JDQ
Asym. Unit
Info
Asym.Unit (163 KB)
Biol.Unit 1 (157 KB)
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(1)
Title
:
C-TERMINAL DOMAIN OF INFLUENZA A VIRUS POLYMERASE PB2 SUBUNIT IN COMPLEX WITH HUMAN IMPORTIN ALPHA5
Authors
:
F. Tarendeau, D. Guilligay, P. Mas, S. Boulo, F. Baudin, R. W. H. Ruigrok D. J. Hart, S. Cusack
Date
:
11 Jan 07 (Deposition) - 27 Feb 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B,D,E
Biol. Unit 1: A,B,D,E (1x)
Keywords
:
Transport, Pb2 Subunit, Nuclear Protein, Protein Transport, Armadillo Repeats, Influenza A Virus Rna-Dependent Rna Polymerase, Bipartite Nuclear Localisation Signal, Nuclear Import Adapter, Human Importin Alpha5, Host-Virus Interaction
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
F. Tarendeau, J. Boudet, D. Guilligay, P. Mas, C. Bougault, S. Boulo, F. Baudin, R. W. H. Ruigrok, N. Daigle, J. Ellenberg, S. Cusack, J. -P. Simorre, D. J. Hart
Structure And Nuclear Import Function Of The C- Terminal Domain Of Influenza Virus Polymerase Pb2 Subunit
Nat. Struct. Mol. Biol. V. 14 229 2007
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
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Sorry, no Info available
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 8)
Info
All PROSITE Patterns/Profiles
1: ARM_REPEAT (A:169-197,B:169-197|A:126-169,B:12...)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ARM_REPEAT
PS50176
Armadillo/plakoglobin ARM repeat profile.
IMA5_HUMAN
169-197
126-169
211-239
338-369
8
A:169-197
B:169-197
A:126-169
B:126-169
A:211-239
B:211-239
A:338-369
B:338-369
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Exons
(11, 22)
Info
All Exons
Exon 1.6 (A:84-113 | B:84-113)
Exon 1.7 (A:113-144 | B:113-144)
Exon 1.10b (A:145-188 | B:145-188)
Exon 1.11c (A:189-218 | B:189-218)
Exon 1.12b (A:218-251 | B:218-251)
Exon 1.13 (A:252-306 | B:252-306)
Exon 1.14b (A:306-332 | B:306-332)
Exon 1.15 (A:333-374 | B:333-374)
Exon 1.16 (A:375-417 | B:375-417)
Exon 1.17 (A:417-477 | B:417-477)
Exon 1.18e (A:477-507 | B:477-509)
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All Exon Boundaries
01: Boundary 1.4/1.6
02: Boundary 1.6/1.7
03: Boundary 1.7/1.10b
04: Boundary 1.10b/1.11c
05: Boundary 1.11c/1.12b
06: Boundary 1.12b/1.13
07: Boundary 1.13/1.14b
08: Boundary 1.14b/1.15
09: Boundary 1.15/1.16
10: Boundary 1.16/1.17
11: Boundary 1.17/1.18e
12: Boundary 1.18e/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1d
ENST00000344337
1d
ENSE00001856631
chr3:
122233775-122233604
172
IMA5_HUMAN
-
0
0
-
-
1.3b
ENST00000344337
3b
ENSE00001370231
chr3:
122215417-122215284
134
IMA5_HUMAN
1-43
43
0
-
-
1.4
ENST00000344337
4
ENSE00001078786
chr3:
122186276-122186169
108
IMA5_HUMAN
44-79
36
0
-
-
1.6
ENST00000344337
6
ENSE00001078787
chr3:
122182888-122182789
100
IMA5_HUMAN
80-113
34
2
A:84-113
B:84-113
30
30
1.7
ENST00000344337
7
ENSE00001801605
chr3:
122180165-122180071
95
IMA5_HUMAN
113-144
32
2
A:113-144
B:113-144
32
32
1.10b
ENST00000344337
10b
ENSE00001150122
chr3:
122172848-122172717
132
IMA5_HUMAN
145-188
44
2
A:145-188
B:145-188
44
44
1.11c
ENST00000344337
11c
ENSE00001150115
chr3:
122170911-122170823
89
IMA5_HUMAN
189-218
30
2
A:189-218
B:189-218
30
30
1.12b
ENST00000344337
12b
ENSE00000776600
chr3:
122170480-122170381
100
IMA5_HUMAN
218-251
34
2
A:218-251
B:218-251
34
34
1.13
ENST00000344337
13
ENSE00000776598
chr3:
122168584-122168421
164
IMA5_HUMAN
252-306
55
2
A:252-306
B:252-306
55
55
1.14b
ENST00000344337
14b
ENSE00001650547
chr3:
122160963-122160885
79
IMA5_HUMAN
306-332
27
2
A:306-332
B:306-332
27
27
1.15
ENST00000344337
15
ENSE00000776592
chr3:
122156142-122156017
126
IMA5_HUMAN
333-374
42
2
A:333-374
B:333-374
42
42
1.16
ENST00000344337
16
ENSE00000776589
chr3:
122152635-122152508
128
IMA5_HUMAN
375-417
43
2
A:375-417
B:375-417
43
43
1.17
ENST00000344337
17
ENSE00000776587
chr3:
122146563-122146385
179
IMA5_HUMAN
417-477
61
2
A:417-477
B:417-477
61
61
1.18e
ENST00000344337
18e
ENSE00001154752
chr3:
122146019-122140796
5224
IMA5_HUMAN
477-538
62
2
A:477-507
B:477-509
31
33
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SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d2jdqa_ (A:)
1b: SCOP_d2jdqb_ (B:)
2a: SCOP_d2jdqd_ (D:)
2b: SCOP_d2jdqe_ (E:)
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Protein Domains
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Organisms
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Class
:
All alpha proteins
(14657)
Fold
:
alpha-alpha superhelix
(690)
Superfamily
:
ARM repeat
(317)
Family
:
automated matches
(39)
Protein domain
:
automated matches
(39)
Human (Homo sapiens) [TaxId: 9606]
(21)
1a
d2jdqa_
A:
1b
d2jdqb_
B:
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
PB2 C-terminal domain-like
(2)
Superfamily
:
PB2 C-terminal domain-like
(2)
Family
:
PB2 C-terminal domain-like
(2)
Protein domain
:
automated matches
(1)
Influenza A virus [TaxId: 11320]
(1)
2a
d2jdqd_
D:
2b
d2jdqe_
E:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_2jdqB00 (B:84-509)
1b: CATH_2jdqA00 (A:84-507)
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Organisms
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Class
:
Mainly Alpha
(13335)
Architecture
:
Alpha Horseshoe
(399)
Topology
:
Leucine-rich Repeat Variant
(77)
Homologous Superfamily
:
Leucine-rich Repeat Variant
(75)
Human (Homo sapiens)
(30)
1a
2jdqB00
B:84-509
1b
2jdqA00
A:84-507
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Pfam Domains
(0, 0)
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Chain E
Asymmetric Unit 1
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Asym.Unit (163 KB)
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Header - Biol.Unit 1
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