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(-) Description

Title :  STRUCTURE OF HUMAN FERROCHELATASE VARIANT E343K WITH PROTOPORPHYRIN IX BOUND
 
Authors :  A. Medlock, L. Swartz, T. A. Dailey, H. A. Dailey, W. N. Lanzilotta
Date :  20 Jul 06  (Deposition) - 13 Mar 07  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Biol. Unit 3:  A (1x),B (1x),C (1x),D (1x)
Keywords :  Heme Synthesis, Ferrochelatase, Protoporphyrin Ix, Lyase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  A. Medlock, L. Swartz, T. A. Dailey, H. A. Dailey, W. N. Lanzilotta
Substrate Interactions With Human Ferrochelatase
Proc. Natl. Acad. Sci. Usa V. 104 1789 2007
PubMed-ID: 17261801  |  Reference-DOI: 10.1073/PNAS.0606144104
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - FERROCHELATASE
    ChainsA, B, C, D
    EC Number4.99.1.1
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPTRCHIS
    Expression System Taxid562
    GeneFECH
    MutationYES
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    Other DetailsPLASMID
    SynonymPROTOHEME FERRO-LYASE, HEME SYNTHETASE

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit ABCD
Biological Unit 1 (1x)AB  
Biological Unit 2 (1x)  CD
Biological Unit 3 (1x)A (1x)B (1x)C (1x)D (1x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 12)

Asymmetric Unit (3, 12)
No.NameCountTypeFull Name
1CHD2Ligand/IonCHOLIC ACID
2FES4Ligand/IonFE2/S2 (INORGANIC) CLUSTER
3PP96Ligand/IonPROTOPORPHYRIN IX
Biological Unit 1 (3, 6)
No.NameCountTypeFull Name
1CHD1Ligand/IonCHOLIC ACID
2FES2Ligand/IonFE2/S2 (INORGANIC) CLUSTER
3PP93Ligand/IonPROTOPORPHYRIN IX
Biological Unit 2 (3, 6)
No.NameCountTypeFull Name
1CHD1Ligand/IonCHOLIC ACID
2FES2Ligand/IonFE2/S2 (INORGANIC) CLUSTER
3PP93Ligand/IonPROTOPORPHYRIN IX
Biological Unit 3 (3, 6)
No.NameCountTypeFull Name
1CHD1Ligand/IonCHOLIC ACID
2FES2Ligand/IonFE2/S2 (INORGANIC) CLUSTER
3PP93Ligand/IonPROTOPORPHYRIN IX

(-) Sites  (12, 12)

Asymmetric Unit (12, 12)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREMET A:76 , GLY A:77 , GLY A:78 , PHE A:88 , LEU A:89 , LEU A:92 , LEU A:98 , MET A:99 , ARG A:115 , ILE A:119 , TYR A:123 , SER A:130 , TYR A:191 , SER A:197 , THR A:198 , HIS A:263 , PRO A:266 , TYR A:276 , VAL A:305 , TRP A:310 , ALA A:336 , HIS A:341 , ILE A:342 , LYS A:343BINDING SITE FOR RESIDUE PP9 A 601
02AC2SOFTWAREMET B:76 , GLY B:77 , GLY B:78 , LEU B:92 , LEU B:98 , MET B:99 , ARG B:115 , ILE B:119 , TYR B:123 , SER B:130 , ILE B:132 , TYR B:191 , THR B:198 , HIS B:263 , PRO B:266 , TYR B:276 , TRP B:310 , ALA B:336 , HIS B:341 , ILE B:342 , LYS B:343 , HOH B:725 , HOH B:727BINDING SITE FOR RESIDUE PP9 B 602
03AC3SOFTWAREILE B:111 , PRO B:307 , MET B:308 , CHD B:701 , HOH B:766 , PRO D:102 , PHE D:110 , ARG D:114 , PP9 D:604BINDING SITE FOR RESIDUE PP9 B 603
04AC4SOFTWAREPHE B:110 , ARG B:114 , PP9 B:603 , ILE D:111 , PRO D:307 , MET D:308 , CHD D:702 , HOH D:727 , HOH D:728 , HOH D:729BINDING SITE FOR RESIDUE PP9 D 604
05AC5SOFTWAREMET C:76 , GLY C:77 , GLY C:78 , LEU C:92 , PHE C:93 , LEU C:98 , ARG C:115 , ILE C:119 , TYR C:123 , SER C:130 , TYR C:191 , SER C:197 , THR C:198 , HIS C:263 , PRO C:266 , VAL C:305 , TRP C:310 , ALA C:336 , PHE C:337 , HIS C:341 , ILE C:342 , LYS C:343BINDING SITE FOR RESIDUE PP9 C 605
06AC6SOFTWAREMET D:76 , GLY D:77 , GLY D:78 , LEU D:92 , PHE D:93 , LEU D:98 , ARG D:115 , ILE D:119 , TYR D:123 , SER D:130 , TYR D:191 , SER D:197 , THR D:198 , HIS D:263 , LEU D:265 , PRO D:266 , TRP D:310 , ALA D:336 , PHE D:337 , HIS D:341 , ILE D:342 , LYS D:343BINDING SITE FOR RESIDUE PP9 D 606
07AC7SOFTWARELYS B:118 , PRO B:307 , PP9 B:603 , HOH D:719BINDING SITE FOR RESIDUE CHD B 701
08AC8SOFTWAREARG D:115 , GLY D:306 , PRO D:307 , PP9 D:604 , HOH D:703BINDING SITE FOR RESIDUE CHD D 702
09AC9SOFTWARECYS A:196 , SER A:402 , CYS A:403 , CYS A:406 , CYS A:411BINDING SITE FOR RESIDUE FES A 501
10BC1SOFTWARECYS B:196 , ARG B:272 , SER B:402 , CYS B:403 , CYS B:406 , CYS B:411BINDING SITE FOR RESIDUE FES B 502
11BC2SOFTWARECYS C:196 , SER C:402 , CYS C:403 , CYS C:406 , CYS C:411BINDING SITE FOR RESIDUE FES C 503
12BC3SOFTWARECYS D:196 , ARG D:272 , SER D:402 , CYS D:403 , CYS D:406 , CYS D:411BINDING SITE FOR RESIDUE FES D 504

(-) SS Bonds  (4, 4)

Asymmetric Unit
No.Residues
1A:323 -A:360
2B:323 -B:360
3C:323 -C:360
4D:323 -D:360

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1His A:167 -Pro A:168
2His C:167 -Pro C:168

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (22, 88)

Asymmetric Unit (22, 88)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
01UniProtVAR_030554I71KHEMH_HUMANDisease (EPP)  ---A/B/C/DI71K
02UniProtVAR_012028R96QHEMH_HUMANPolymorphism1041951A/B/C/DR96Q
03UniProtVAR_030555Q139LHEMH_HUMANDisease (EPP)  ---A/B/C/DQ139L
04UniProtVAR_030556S151PHEMH_HUMANDisease (EPP)  ---A/B/C/DS151P
05UniProtVAR_030557E178KHEMH_HUMANDisease (EPP)  ---A/B/C/DE178K
06UniProtVAR_030558L182RHEMH_HUMANDisease (EPP)  ---A/B/C/DL182R
07UniProtVAR_002384I186THEMH_HUMANDisease (EPP)  ---A/B/C/DI186T
08UniProtVAR_030559Y191HHEMH_HUMANDisease (EPP)  ---A/B/C/DY191H
09UniProtVAR_030560P192THEMH_HUMANDisease (EPP)  ---A/B/C/DP192T
10UniProtVAR_030561C236YHEMH_HUMANDisease (EPP)761962617A/B/C/DC236Y
11UniProtVAR_030562F260LHEMH_HUMANDisease (EPP)  ---A/B/C/DF260L
12UniProtVAR_054629S264LHEMH_HUMANDisease (EPP)  ---A/B/C/DS264L
13UniProtVAR_002385M267IHEMH_HUMANDisease (EPP)118204037A/B/C/DM267I
14UniProtVAR_030563T283IHEMH_HUMANDisease (EPP)  ---A/B/C/DT283I
15UniProtVAR_030564M288KHEMH_HUMANDisease (EPP)  ---A/B/C/DM288K
16UniProtVAR_030565P334LHEMH_HUMANDisease (EPP)150146721A/B/C/DP334L
17UniProtVAR_030566V362GHEMH_HUMANDisease (EPP)118204040A/B/C/DV362G
18UniProtVAR_030567K379NHEMH_HUMANDisease (EPP)  ---A/B/C/DK379N
19UniProtVAR_002386H386PHEMH_HUMANDisease (EPP)  ---A/B/C/DH386P
20UniProtVAR_030568C406SHEMH_HUMANDisease (EPP)  ---A/B/C/DC406S
21UniProtVAR_030569C406YHEMH_HUMANDisease (EPP)  ---A/B/C/DC406Y
22UniProtVAR_002387F417SHEMH_HUMANDisease (EPP)118204039A/B/C/DF417S

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 1 (22, 44)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
01UniProtVAR_030554I71KHEMH_HUMANDisease (EPP)  ---A/BI71K
02UniProtVAR_012028R96QHEMH_HUMANPolymorphism1041951A/BR96Q
03UniProtVAR_030555Q139LHEMH_HUMANDisease (EPP)  ---A/BQ139L
04UniProtVAR_030556S151PHEMH_HUMANDisease (EPP)  ---A/BS151P
05UniProtVAR_030557E178KHEMH_HUMANDisease (EPP)  ---A/BE178K
06UniProtVAR_030558L182RHEMH_HUMANDisease (EPP)  ---A/BL182R
07UniProtVAR_002384I186THEMH_HUMANDisease (EPP)  ---A/BI186T
08UniProtVAR_030559Y191HHEMH_HUMANDisease (EPP)  ---A/BY191H
09UniProtVAR_030560P192THEMH_HUMANDisease (EPP)  ---A/BP192T
10UniProtVAR_030561C236YHEMH_HUMANDisease (EPP)761962617A/BC236Y
11UniProtVAR_030562F260LHEMH_HUMANDisease (EPP)  ---A/BF260L
12UniProtVAR_054629S264LHEMH_HUMANDisease (EPP)  ---A/BS264L
13UniProtVAR_002385M267IHEMH_HUMANDisease (EPP)118204037A/BM267I
14UniProtVAR_030563T283IHEMH_HUMANDisease (EPP)  ---A/BT283I
15UniProtVAR_030564M288KHEMH_HUMANDisease (EPP)  ---A/BM288K
16UniProtVAR_030565P334LHEMH_HUMANDisease (EPP)150146721A/BP334L
17UniProtVAR_030566V362GHEMH_HUMANDisease (EPP)118204040A/BV362G
18UniProtVAR_030567K379NHEMH_HUMANDisease (EPP)  ---A/BK379N
19UniProtVAR_002386H386PHEMH_HUMANDisease (EPP)  ---A/BH386P
20UniProtVAR_030568C406SHEMH_HUMANDisease (EPP)  ---A/BC406S
21UniProtVAR_030569C406YHEMH_HUMANDisease (EPP)  ---A/BC406Y
22UniProtVAR_002387F417SHEMH_HUMANDisease (EPP)118204039A/BF417S

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 2 (22, 44)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
01UniProtVAR_030554I71KHEMH_HUMANDisease (EPP)  ---C/DI71K
02UniProtVAR_012028R96QHEMH_HUMANPolymorphism1041951C/DR96Q
03UniProtVAR_030555Q139LHEMH_HUMANDisease (EPP)  ---C/DQ139L
04UniProtVAR_030556S151PHEMH_HUMANDisease (EPP)  ---C/DS151P
05UniProtVAR_030557E178KHEMH_HUMANDisease (EPP)  ---C/DE178K
06UniProtVAR_030558L182RHEMH_HUMANDisease (EPP)  ---C/DL182R
07UniProtVAR_002384I186THEMH_HUMANDisease (EPP)  ---C/DI186T
08UniProtVAR_030559Y191HHEMH_HUMANDisease (EPP)  ---C/DY191H
09UniProtVAR_030560P192THEMH_HUMANDisease (EPP)  ---C/DP192T
10UniProtVAR_030561C236YHEMH_HUMANDisease (EPP)761962617C/DC236Y
11UniProtVAR_030562F260LHEMH_HUMANDisease (EPP)  ---C/DF260L
12UniProtVAR_054629S264LHEMH_HUMANDisease (EPP)  ---C/DS264L
13UniProtVAR_002385M267IHEMH_HUMANDisease (EPP)118204037C/DM267I
14UniProtVAR_030563T283IHEMH_HUMANDisease (EPP)  ---C/DT283I
15UniProtVAR_030564M288KHEMH_HUMANDisease (EPP)  ---C/DM288K
16UniProtVAR_030565P334LHEMH_HUMANDisease (EPP)150146721C/DP334L
17UniProtVAR_030566V362GHEMH_HUMANDisease (EPP)118204040C/DV362G
18UniProtVAR_030567K379NHEMH_HUMANDisease (EPP)  ---C/DK379N
19UniProtVAR_002386H386PHEMH_HUMANDisease (EPP)  ---C/DH386P
20UniProtVAR_030568C406SHEMH_HUMANDisease (EPP)  ---C/DC406S
21UniProtVAR_030569C406YHEMH_HUMANDisease (EPP)  ---C/DC406Y
22UniProtVAR_002387F417SHEMH_HUMANDisease (EPP)118204039C/DF417S

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 3 (22, 88)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
01UniProtVAR_030554I71KHEMH_HUMANDisease (EPP)  ---A/B/C/DI71K
02UniProtVAR_012028R96QHEMH_HUMANPolymorphism1041951A/B/C/DR96Q
03UniProtVAR_030555Q139LHEMH_HUMANDisease (EPP)  ---A/B/C/DQ139L
04UniProtVAR_030556S151PHEMH_HUMANDisease (EPP)  ---A/B/C/DS151P
05UniProtVAR_030557E178KHEMH_HUMANDisease (EPP)  ---A/B/C/DE178K
06UniProtVAR_030558L182RHEMH_HUMANDisease (EPP)  ---A/B/C/DL182R
07UniProtVAR_002384I186THEMH_HUMANDisease (EPP)  ---A/B/C/DI186T
08UniProtVAR_030559Y191HHEMH_HUMANDisease (EPP)  ---A/B/C/DY191H
09UniProtVAR_030560P192THEMH_HUMANDisease (EPP)  ---A/B/C/DP192T
10UniProtVAR_030561C236YHEMH_HUMANDisease (EPP)761962617A/B/C/DC236Y
11UniProtVAR_030562F260LHEMH_HUMANDisease (EPP)  ---A/B/C/DF260L
12UniProtVAR_054629S264LHEMH_HUMANDisease (EPP)  ---A/B/C/DS264L
13UniProtVAR_002385M267IHEMH_HUMANDisease (EPP)118204037A/B/C/DM267I
14UniProtVAR_030563T283IHEMH_HUMANDisease (EPP)  ---A/B/C/DT283I
15UniProtVAR_030564M288KHEMH_HUMANDisease (EPP)  ---A/B/C/DM288K
16UniProtVAR_030565P334LHEMH_HUMANDisease (EPP)150146721A/B/C/DP334L
17UniProtVAR_030566V362GHEMH_HUMANDisease (EPP)118204040A/B/C/DV362G
18UniProtVAR_030567K379NHEMH_HUMANDisease (EPP)  ---A/B/C/DK379N
19UniProtVAR_002386H386PHEMH_HUMANDisease (EPP)  ---A/B/C/DH386P
20UniProtVAR_030568C406SHEMH_HUMANDisease (EPP)  ---A/B/C/DC406S
21UniProtVAR_030569C406YHEMH_HUMANDisease (EPP)  ---A/B/C/DC406Y
22UniProtVAR_002387F417SHEMH_HUMANDisease (EPP)118204039A/B/C/DF417S

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (1, 4)

Asymmetric Unit (1, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1FERROCHELATASEPS00534 Ferrochelatase signature.HEMH_HUMAN258-276
 
 
 
  4A:258-276
B:258-276
C:258-276
D:258-276
Biological Unit 1 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1FERROCHELATASEPS00534 Ferrochelatase signature.HEMH_HUMAN258-276
 
 
 
  2A:258-276
B:258-276
-
-
Biological Unit 2 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1FERROCHELATASEPS00534 Ferrochelatase signature.HEMH_HUMAN258-276
 
 
 
  2-
-
C:258-276
D:258-276
Biological Unit 3 (1, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1FERROCHELATASEPS00534 Ferrochelatase signature.HEMH_HUMAN258-276
 
 
 
  4A:258-276
B:258-276
C:258-276
D:258-276

(-) Exons   (10, 40)

Asymmetric Unit (10, 40)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1aENST000002620931aENSE00001229850chr18:55254004-55253786219HEMH_HUMAN1-23230--
1.2aENST000002620932aENSE00000669631chr18:55247431-55247305127HEMH_HUMAN23-65434A:65-65
B:65-65
C:65-65
D:65-65
1
1
1
1
1.3ENST000002620933ENSE00001229830chr18:55240597-55240478120HEMH_HUMAN65-105414A:65-105
B:65-105
C:65-105
D:65-105
41
41
41
41
1.4ENST000002620934ENSE00000669629chr18:55238772-55238624149HEMH_HUMAN105-155514A:105-155
B:105-155
C:105-155
D:105-155
51
51
51
51
1.5ENST000002620935ENSE00000669628chr18:55233813-55233679135HEMH_HUMAN155-200464A:155-200
B:155-200
C:155-200
D:155-200
46
46
46
46
1.6ENST000002620936ENSE00000669627chr18:55230212-55230106107HEMH_HUMAN200-235364A:200-235
B:200-235
C:200-235
D:200-235
36
36
36
36
1.7ENST000002620937ENSE00001229801chr18:55226475-5522637799HEMH_HUMAN236-268334A:236-268
B:236-268
C:236-268
D:236-268
33
33
33
33
1.8ENST000002620938ENSE00000669625chr18:55222184-55222077108HEMH_HUMAN269-304364A:269-304
B:269-304
C:269-304
D:269-304
36
36
36
36
1.9ENST000002620939ENSE00001229786chr18:55221656-55221492165HEMH_HUMAN305-359554A:305-359
B:305-359
C:305-359
D:305-359
55
55
55
55
1.10ENST0000026209310ENSE00000669622chr18:55218606-5521854760HEMH_HUMAN360-379204A:360-379
B:360-379
C:360-379
D:360-379
20
20
20
20
1.11bENST0000026209311bENSE00001229844chr18:55218078-552155152564HEMH_HUMAN380-423444A:380-423
B:380-423
C:380-423
D:380-423
44
44
44
44

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:359
 aligned with HEMH_HUMAN | P22830 from UniProtKB/Swiss-Prot  Length:423

    Alignment length:359
                                    74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414         
           HEMH_HUMAN    65 RKPKTGILMLNMGGPETLGDVHDFLLRLFLDRDLMTLPIQNKLAPFIAKRRTPKIQEQYRRIGGGSPIKIWTSKQGEGMVKLLDELSPNTAPHKYYIGFRYVHPLTEEAIEEMERDGLERAIAFTQYPQYSCSTTGSSLNAIYRYYNQVGRKPTMKWSTIDRWPTHHLLIQCFADHILKELDHFPLEKRSEVVILFSAHSLPMSVVNRGDPYPQEVSATVQKVMERLEYCNPYRLVWQSKVGPMPWLGPQTDESIKGLCERGRKNILLVPIAFTSDHIETLYELDIEYSQVLAKECGVENIRRAESLNGNPLFSKALADLVHSHIQSNELCSKQLTLSCPLCVNPVCRETKSFFTSQQL 423
               SCOP domains d2hrea_ A: Ferrochelatase                                                                                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains 2hreA01 A:65-227,A:371-423  [code=3.40.50.1400, no name defined]                                                                                                   2hreA02 A:228-370  [code=3.40.50.1400, no name defined]                                                                                        2hreA01 A:65-227,A:371-423                            CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeee.....hhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeee.....hhhhhhhhhhh....eeeeee........hhhhhhhhhhhhhhhhh.....eeeee.....hhhhhhhhhhhhhhhhh.....hhhhheeeeeee..hhhhhh...hhhhhhhhhhhhhhhhh.....eeeeee...........hhhhhhhhhhh....eeeee.......hhhhhh.......hhhhhhhh..eeee......hhhhhhhhhhhhhhhhhhh...............hhhhhhhhhhhhh... Sec.struct. author
             SAPs(SNPs) (1) ------K------------------------Q------------------------------------------L-----------P--------------------------K---R---T----HT-------------------------------------------Y-----------------------L---L--I---------------I----K---------------------------------------------L---------------------------G----------------N------P-------------------S----------S------ SAPs(SNPs) (1)
             SAPs(SNPs) (2) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Y----------------- SAPs(SNPs) (2)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FERROCHELATASE     --------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) 1---------------------------------------Exon 1.4  PDB: A:105-155 UniProt: 105-155          --------------------------------------------Exon 1.6  PDB: A:200-235            Exon 1.7  PDB: A:236-268         Exon 1.8  PDB: A:269-304            Exon 1.9  PDB: A:305-359 UniProt: 305-359              Exon 1.10           Exon 1.11b  PDB: A:380-423 UniProt: 380-423  Transcript 1 (1)
           Transcript 1 (2) Exon 1.3  PDB: A:65-105 UniProt: 65-105  -------------------------------------------------Exon 1.5  PDB: A:155-200 UniProt: 155-200     ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (2)
                 2hre A  65 RKPKTGILMLNMGGPETLGDVHDFLLRLFLDRDLMTLPIQNKLAPFIAKRRTPKIQEQYRRIGGGSPIKIWTSKQGEGMVKLLDELSPNTAPHKYYIGFRYVHPLTEEAIEEMERDGLERAIAFTQYPQYSCSTTGSSLNAIYRYYNQVGRKPTMKWSTIDRWPTHHLLIQCFADHILKELDHFPLEKRSEVVILFSAHSLPMSVVNRGDPYPQEVSATVQKVMERLEYCNPYRLVWQSKVGPMPWLGPQTDESIKGLCERGRKNILLVPIAFTSDHIKTLYELDIEYSQVLAKECGVENIRRAESLNGNPLFSKALADLVHSHIQSNELCSKQLTLSCPLCVNPVCRETKSFFTSQQL 423
                                    74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414         

Chain B from PDB  Type:PROTEIN  Length:359
 aligned with HEMH_HUMAN | P22830 from UniProtKB/Swiss-Prot  Length:423

    Alignment length:359
                                    74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414         
           HEMH_HUMAN    65 RKPKTGILMLNMGGPETLGDVHDFLLRLFLDRDLMTLPIQNKLAPFIAKRRTPKIQEQYRRIGGGSPIKIWTSKQGEGMVKLLDELSPNTAPHKYYIGFRYVHPLTEEAIEEMERDGLERAIAFTQYPQYSCSTTGSSLNAIYRYYNQVGRKPTMKWSTIDRWPTHHLLIQCFADHILKELDHFPLEKRSEVVILFSAHSLPMSVVNRGDPYPQEVSATVQKVMERLEYCNPYRLVWQSKVGPMPWLGPQTDESIKGLCERGRKNILLVPIAFTSDHIETLYELDIEYSQVLAKECGVENIRRAESLNGNPLFSKALADLVHSHIQSNELCSKQLTLSCPLCVNPVCRETKSFFTSQQL 423
               SCOP domains d2hreb_ B: Ferrochelatase                                                                                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains 2hreB01 B:65-227,B:371-423  [code=3.40.50.1400, no name defined]                                                                                                   2hreB02 B:228-370  [code=3.40.50.1400, no name defined]                                                                                        2hreB01 B:65-227,B:371-423                            CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeee.....hhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeee.....hhhhhhhhhhhh...eeeeee........hhhhhhhhhhhhhhhhh.....eeeee.....hhhhhhhhhhhhhhhhh.....hhhhheeeeeee..hhhhhh...hhhhhhhhhhhhhhhhh.....eeeeee...........hhhhhhhhhhhh...eeeee.......hhhhhh.......hhhhhhhh..eeee......hhhhhhhhhhhhhhhhhhh....hhhhh......hhhhhhhhhhhhh... Sec.struct. author
             SAPs(SNPs) (1) ------K------------------------Q------------------------------------------L-----------P--------------------------K---R---T----HT-------------------------------------------Y-----------------------L---L--I---------------I----K---------------------------------------------L---------------------------G----------------N------P-------------------S----------S------ SAPs(SNPs) (1)
             SAPs(SNPs) (2) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Y----------------- SAPs(SNPs) (2)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FERROCHELATASE     --------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) 1---------------------------------------Exon 1.4  PDB: B:105-155 UniProt: 105-155          --------------------------------------------Exon 1.6  PDB: B:200-235            Exon 1.7  PDB: B:236-268         Exon 1.8  PDB: B:269-304            Exon 1.9  PDB: B:305-359 UniProt: 305-359              Exon 1.10           Exon 1.11b  PDB: B:380-423 UniProt: 380-423  Transcript 1 (1)
           Transcript 1 (2) Exon 1.3  PDB: B:65-105 UniProt: 65-105  -------------------------------------------------Exon 1.5  PDB: B:155-200 UniProt: 155-200     ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (2)
                 2hre B  65 RKPKTGILMLNMGGPETLGDVHDFLLRLFLDRDLMTLPIQNKLAPFIAKRRTPKIQEQYRRIGGGSPIKIWTSKQGEGMVKLLDELSPNTAPHKYYIGFRYVHPLTEEAIEEMERDGLERAIAFTQYPQYSCSTTGSSLNAIYRYYNQVGRKPTMKWSTIDRWPTHHLLIQCFADHILKELDHFPLEKRSEVVILFSAHSLPMSVVNRGDPYPQEVSATVQKVMERLEYCNPYRLVWQSKVGPMPWLGPQTDESIKGLCERGRKNILLVPIAFTSDHIKTLYELDIEYSQVLAKECGVENIRRAESLNGNPLFSKALADLVHSHIQSNELCSKQLTLSCPLCVNPVCRETKSFFTSQQL 423
                                    74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414         

Chain C from PDB  Type:PROTEIN  Length:359
 aligned with HEMH_HUMAN | P22830 from UniProtKB/Swiss-Prot  Length:423

    Alignment length:359
                                    74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414         
           HEMH_HUMAN    65 RKPKTGILMLNMGGPETLGDVHDFLLRLFLDRDLMTLPIQNKLAPFIAKRRTPKIQEQYRRIGGGSPIKIWTSKQGEGMVKLLDELSPNTAPHKYYIGFRYVHPLTEEAIEEMERDGLERAIAFTQYPQYSCSTTGSSLNAIYRYYNQVGRKPTMKWSTIDRWPTHHLLIQCFADHILKELDHFPLEKRSEVVILFSAHSLPMSVVNRGDPYPQEVSATVQKVMERLEYCNPYRLVWQSKVGPMPWLGPQTDESIKGLCERGRKNILLVPIAFTSDHIETLYELDIEYSQVLAKECGVENIRRAESLNGNPLFSKALADLVHSHIQSNELCSKQLTLSCPLCVNPVCRETKSFFTSQQL 423
               SCOP domains d2hrec_ C: Ferrochelatase                                                                                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains 2hreC01 C:65-227,C:371-423  [code=3.40.50.1400, no name defined]                                                                                                   2hreC02 C:228-370  [code=3.40.50.1400, no name defined]                                                                                        2hreC01 C:65-227,C:371-423                            CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeee.....hhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeee.....hhhhhhhhhhhh...eeeeee........hhhhhhhhhhhhhhhhh.....eeeee.....hhhhhhhhhhhhhhhhh.....hhhhheeeeeee..hhhhhh...hhhhhhhhhhhhhhhhh.....eeeeee...........hhhhhhhhhhh....eeeee.......hhhhhh.......hhhhhhhh..eeee......hhhhhhhhhhhhhhhhhhh....hhhhh........hhhhhhhhhhh... Sec.struct. author
             SAPs(SNPs) (1) ------K------------------------Q------------------------------------------L-----------P--------------------------K---R---T----HT-------------------------------------------Y-----------------------L---L--I---------------I----K---------------------------------------------L---------------------------G----------------N------P-------------------S----------S------ SAPs(SNPs) (1)
             SAPs(SNPs) (2) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Y----------------- SAPs(SNPs) (2)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FERROCHELATASE     --------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) 1---------------------------------------Exon 1.4  PDB: C:105-155 UniProt: 105-155          --------------------------------------------Exon 1.6  PDB: C:200-235            Exon 1.7  PDB: C:236-268         Exon 1.8  PDB: C:269-304            Exon 1.9  PDB: C:305-359 UniProt: 305-359              Exon 1.10           Exon 1.11b  PDB: C:380-423 UniProt: 380-423  Transcript 1 (1)
           Transcript 1 (2) Exon 1.3  PDB: C:65-105 UniProt: 65-105  -------------------------------------------------Exon 1.5  PDB: C:155-200 UniProt: 155-200     ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (2)
                 2hre C  65 RKPKTGILMLNMGGPETLGDVHDFLLRLFLDRDLMTLPIQNKLAPFIAKRRTPKIQEQYRRIGGGSPIKIWTSKQGEGMVKLLDELSPNTAPHKYYIGFRYVHPLTEEAIEEMERDGLERAIAFTQYPQYSCSTTGSSLNAIYRYYNQVGRKPTMKWSTIDRWPTHHLLIQCFADHILKELDHFPLEKRSEVVILFSAHSLPMSVVNRGDPYPQEVSATVQKVMERLEYCNPYRLVWQSKVGPMPWLGPQTDESIKGLCERGRKNILLVPIAFTSDHIKTLYELDIEYSQVLAKECGVENIRRAESLNGNPLFSKALADLVHSHIQSNELCSKQLTLSCPLCVNPVCRETKSFFTSQQL 423
                                    74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414         

Chain D from PDB  Type:PROTEIN  Length:359
 aligned with HEMH_HUMAN | P22830 from UniProtKB/Swiss-Prot  Length:423

    Alignment length:359
                                    74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414         
           HEMH_HUMAN    65 RKPKTGILMLNMGGPETLGDVHDFLLRLFLDRDLMTLPIQNKLAPFIAKRRTPKIQEQYRRIGGGSPIKIWTSKQGEGMVKLLDELSPNTAPHKYYIGFRYVHPLTEEAIEEMERDGLERAIAFTQYPQYSCSTTGSSLNAIYRYYNQVGRKPTMKWSTIDRWPTHHLLIQCFADHILKELDHFPLEKRSEVVILFSAHSLPMSVVNRGDPYPQEVSATVQKVMERLEYCNPYRLVWQSKVGPMPWLGPQTDESIKGLCERGRKNILLVPIAFTSDHIETLYELDIEYSQVLAKECGVENIRRAESLNGNPLFSKALADLVHSHIQSNELCSKQLTLSCPLCVNPVCRETKSFFTSQQL 423
               SCOP domains d2hred_ D: Ferrochelatase                                                                                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains 2hreD01 D:65-227,D:371-423  [code=3.40.50.1400, no name defined]                                                                                                   2hreD02 D:228-370  [code=3.40.50.1400, no name defined]                                                                                        2hreD01 D:65-227,D:371-423                            CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeee.....hhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeee.....hhhhhhhhhhhh...eeeeee........hhhhhhhhhhhhhhhhh.....eeeee.....hhhhhhhhhhhhhhhhh..........eeeeeee..hhhhhh...hhhhhhhhhhhhhhhhh.....eeeeee...........hhhhhhhhhhh....eeeee.......hhhhhh.......hhhhhhhh..eeee......hhhhhhhhhhhhhhhhhhh....hhhhh.......hhhhhhhhhhh.... Sec.struct. author
             SAPs(SNPs) (1) ------K------------------------Q------------------------------------------L-----------P--------------------------K---R---T----HT-------------------------------------------Y-----------------------L---L--I---------------I----K---------------------------------------------L---------------------------G----------------N------P-------------------S----------S------ SAPs(SNPs) (1)
             SAPs(SNPs) (2) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Y----------------- SAPs(SNPs) (2)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FERROCHELATASE     --------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) 1---------------------------------------Exon 1.4  PDB: D:105-155 UniProt: 105-155          --------------------------------------------Exon 1.6  PDB: D:200-235            Exon 1.7  PDB: D:236-268         Exon 1.8  PDB: D:269-304            Exon 1.9  PDB: D:305-359 UniProt: 305-359              Exon 1.10           Exon 1.11b  PDB: D:380-423 UniProt: 380-423  Transcript 1 (1)
           Transcript 1 (2) Exon 1.3  PDB: D:65-105 UniProt: 65-105  -------------------------------------------------Exon 1.5  PDB: D:155-200 UniProt: 155-200     ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (2)
                 2hre D  65 RKPKTGILMLNMGGPETLGDVHDFLLRLFLDRDLMTLPIQNKLAPFIAKRRTPKIQEQYRRIGGGSPIKIWTSKQGEGMVKLLDELSPNTAPHKYYIGFRYVHPLTEEAIEEMERDGLERAIAFTQYPQYSCSTTGSSLNAIYRYYNQVGRKPTMKWSTIDRWPTHHLLIQCFADHILKELDHFPLEKRSEVVILFSAHSLPMSVVNRGDPYPQEVSATVQKVMERLEYCNPYRLVWQSKVGPMPWLGPQTDESIKGLCERGRKNILLVPIAFTSDHIKTLYELDIEYSQVLAKECGVENIRRAESLNGNPLFSKALADLVHSHIQSNELCSKQLTLSCPLCVNPVCRETKSFFTSQQL 423
                                    74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414         

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric Unit

(-) CATH Domains  (1, 8)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)
1a2hreA02A:228-370
1b2hreB02B:228-370
1c2hreC02C:228-370
1d2hreD02D:228-370
1e2hreA01A:65-227,A:371-423
1f2hreB01B:65-227,B:371-423
1g2hreC01C:65-227,C:371-423
1h2hreD01D:65-227,D:371-423

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2HRE)

(-) Gene Ontology  (25, 25)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (HEMH_HUMAN | P22830)
molecular function
    GO:0051537    2 iron, 2 sulfur cluster binding    Interacting selectively and non-covalently with a 2 iron, 2 sulfur (2Fe-2S) cluster; this cluster consists of two iron atoms, with two inorganic sulfur atoms found between the irons and acting as bridging ligands.
    GO:0004325    ferrochelatase activity    Catalysis of the reaction: protoheme = Fe(2+) + protoporphyrin IX.
    GO:0008198    ferrous iron binding    Interacting selectively and non-covalently with ferrous iron, Fe(II).
    GO:0051536    iron-sulfur cluster binding    Interacting selectively and non-covalently with an iron-sulfur cluster, a combination of iron and sulfur atoms.
    GO:0016829    lyase activity    Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
    GO:0071549    cellular response to dexamethasone stimulus    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a dexamethasone stimulus.
    GO:0006091    generation of precursor metabolites and energy    The chemical reactions and pathways resulting in the formation of precursor metabolites, substances from which energy is derived, and any process involved in the liberation of energy from these substances.
    GO:0006783    heme biosynthetic process    The chemical reactions and pathways resulting in the formation of heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring, from less complex precursors.
    GO:0006779    porphyrin-containing compound biosynthetic process    The chemical reactions and pathways resulting in the formation of any member of a large group of derivatives or analogs of porphyrin. Porphyrin consists of a ring of four pyrrole nuclei linked each to the next at their alpha positions through a methine group.
    GO:0046501    protoporphyrinogen IX metabolic process    The chemical reactions and pathways involving protoporphyrinogen IX, the specific substrate for the enzyme ferrochelatase, which catalyzes the insertion of iron to form protoheme. It is probably also the substrate for chlorophyll formation.
    GO:0046685    response to arsenic-containing substance    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an arsenic stimulus from compounds containing arsenic, including arsenates, arsenites, and arsenides.
    GO:0042493    response to drug    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease.
    GO:0045471    response to ethanol    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ethanol stimulus.
    GO:0017085    response to insecticide    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an insecticide stimulus. Insecticides are chemicals used to kill insects.
    GO:0010288    response to lead ion    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a lead ion stimulus.
    GO:0009416    response to light stimulus    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a light stimulus, electromagnetic radiation of wavelengths classified as infrared, visible or ultraviolet light.
    GO:0010038    response to metal ion    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a metal ion stimulus.
    GO:0051597    response to methylmercury    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a methylmercury stimulus.
    GO:0070541    response to platinum ion    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a platinum stimulus.
cellular component
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005743    mitochondrial inner membrane    The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae.
    GO:0005759    mitochondrial matrix    The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty acid oxidation.
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        HEMH_HUMAN | P228301hrk 2hrc 2pnj 2po5 2po7 2qd1 2qd2 2qd3 2qd4 2qd5 3aqi 3hcn 3hco 3hcp 3hcr 3w1w 4f4d 4kla 4klc 4klr 4kmm 4mk4

(-) Related Entries Specified in the PDB File

1hrk CRYSTAL STRUCTURE OF HUMAN FERROCHELATASE
2hrc 1.7 ANGSTROM STRUCTURE OF HUMAN FERROCHELATASE VARIANT R115L