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(-) Description

Title :  F337R VARIANT OF HUMAN FERROCHELATASE
 
Authors :  W. N. Lanzilotta, A. E. Medlock, T. E. Dailey, H. A. Dailey
Date :  10 May 12  (Deposition) - 12 Sep 12  (Release) - 12 Sep 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Ferrochelatase, Heme Biosynthesis, Lyase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  W. N. Lanzilotta, A. E. Medlock, T. E. Dailey, H. A. Dailey
F337R Variant Of Human Ferrochelatase
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - FERROCHELATASE, MITOCHONDRIAL
    Chains: A, B
    EC Number: 4.99.1.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 65-423
    Gene: FECH
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: HEME SYNTHASE, PROTOHEME FERRO-LYASE

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 11)

Asymmetric/Biological Unit (4, 11)
No.NameCountTypeFull Name
1CHD6Ligand/IonCHOLIC ACID
2CL2Ligand/IonCHLORIDE ION
3FES2Ligand/IonFE2/S2 (INORGANIC) CLUSTER
4GOL1Ligand/IonGLYCEROL

(-) Sites  (11, 11)

Asymmetric Unit (11, 11)
No.NameEvidenceResiduesDescription
01AC1SOFTWARETYR A:123 , SER A:130 , ILE A:132 , ILE A:342BINDING SITE FOR RESIDUE CL A 501
02AC2SOFTWAREPRO A:277 , GLN A:278 , SER A:281 , TRP A:301 , HOH A:604 , HOH A:678 , PRO B:277 , GLN B:278 , SER B:281 , TRP B:301BINDING SITE FOR RESIDUE GOL A 502
03AC3SOFTWARECYS A:196 , ARG A:272 , SER A:402 , CYS A:403 , CYS A:406 , CYS A:411BINDING SITE FOR RESIDUE FES A 503
04AC4SOFTWARELEU A:89 , LEU A:92 , LEU A:98 , ARG A:115 , GLN A:122 , HIS A:263 , VAL A:305 , HOH A:674 , HOH A:691 , HOH A:704 , HOH A:735 , HOH A:832 , HOH A:844BINDING SITE FOR RESIDUE CHD A 504
05AC5SOFTWAREMET A:99 , ARG A:114 , ARG A:115 , VAL A:305 , MET A:308 , TRP A:310 , CHD A:506 , HOH A:705 , HOH A:724 , HOH A:771 , HOH A:871BINDING SITE FOR RESIDUE CHD A 505
06AC6SOFTWARETHR A:100 , CHD A:505 , HOH A:880 , PHE B:110BINDING SITE FOR RESIDUE CHD A 506
07AC7SOFTWARETYR B:123 , SER B:130 , ILE B:132 , ILE B:342BINDING SITE FOR RESIDUE CL B 501
08AC8SOFTWARECYS B:196 , ARG B:272 , SER B:402 , CYS B:403 , CYS B:406 , CYS B:411BINDING SITE FOR RESIDUE FES B 502
09AC9SOFTWAREMET B:99 , ILE B:111 , ARG B:114 , ARG B:115 , PRO B:266 , MET B:308 , CHD B:504 , CHD B:505 , HOH B:740 , HOH B:855 , HOH B:879BINDING SITE FOR RESIDUE CHD B 503
10BC1SOFTWARELYS A:106 , PHE A:110 , THR B:100 , CHD B:503BINDING SITE FOR RESIDUE CHD B 504
11BC2SOFTWARELEU B:98 , ARG B:115 , LYS B:118 , ILE B:119 , SER B:197 , THR B:198 , HIS B:263 , VAL B:305 , CHD B:503 , HOH B:746 , HOH B:795 , HOH B:812 , HOH B:837 , HOH B:852 , HOH B:859BINDING SITE FOR RESIDUE CHD B 505

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4F4D)

(-) Cis Peptide Bonds  (6, 6)

Asymmetric/Biological Unit
No.Residues
1Ala A:155 -Pro A:156
2His A:167 -Pro A:168
3Gly A:312 -Pro A:313
4Ala B:155 -Pro B:156
5His B:167 -Pro B:168
6Gly B:312 -Pro B:313

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4F4D)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4F4D)

(-) Exons   (0, 0)

(no "Exon" information available for 4F4D)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:359
                                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains d4f4da_ A: Ferrochelatase                                                                                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeee.....hhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeee.....hhhhhhhhhhhh...eeeeee........hhhhhhhhhhhhhhhhh.....eeeee.....hhhhhhhhhhhhhhhhhhhhhhhhhhheeeeeee..hhhhhh...hhhhhhhhhhhhhhhhh.....eeeeee...........hhhhhhhhhhhh...eeeeee......hhhhhh.......hhhhhhh...eeee......hhhhhhhhhhhhhhhhhhh...hhhhhh.......hhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4f4d A  65 RKPKTGILMLNMGGPETLGDVHDFLLRLFLDRDLMTLPIQNKLAPFIAKRRTPKIQEQYRRIGGGSPIKIWTSKQGEGMVKLLDELSPNTAPHKYYIGFRYVHPLTEEAIEEMERDGLERAIAFTQYPQYSCSTTGSSLNAIYRYYNQVGRKPTMKWSTIDRWPTHHLLIQCFADHILKELDHFPLEKRSEVVILFSAHSLPMSVVNRGDPYPQEVSATVQKVMERLEYCNPYRLVWQSKVGPMPWLGPQTDESIKGLCERGRKNILLVPIARTSDHIETLYELDIEYSQVLAKECGVENIRRAESLNGNPLFSKALADLVHSHIQSNELCSKQLTLSCPLCVNPVCRETKSFFTSQQL 423
                                    74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414         


Chain B from PDB  Type:PROTEIN  Length:359
                                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains d4f4db_ B: Ferrochelatase                                                                                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeee.....hhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeee.....hhhhhhhhhhhh...eeeeee........hhhhhhhhhhhhhhhhh.....eeeee.....hhhhhhhhhhhhhhhhhhhhhhhhhhheeeeeee..hhhhhh...hhhhhhhhhhhhhhhhh.....eeeeee...........hhhhhhhhhhhh...eeeeee......hhhhhh.......hhhhhhhh..eeee......hhhhhhhhhhhhhhhhhhh...hhhhhh.......hhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4f4d B  65 RKPKTGILMLNMGGPETLGDVHDFLLRLFLDRDLMTLPIQNKLAPFIAKRRTPKIQEQYRRIGGGSPIKIWTSKQGEGMVKLLDELSPNTAPHKYYIGFRYVHPLTEEAIEEMERDGLERAIAFTQYPQYSCSTTGSSLNAIYRYYNQVGRKPTMKWSTIDRWPTHHLLIQCFADHILKELDHFPLEKRSEVVILFSAHSLPMSVVNRGDPYPQEVSATVQKVMERLEYCNPYRLVWQSKVGPMPWLGPQTDESIKGLCERGRKNILLVPIARTSDHIETLYELDIEYSQVLAKECGVENIRRAESLNGNPLFSKALADLVHSHIQSNELCSKQLTLSCPLCVNPVCRETKSFFTSQQL 423
                                    74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4F4D)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4F4D)

(-) Gene Ontology  (25, 25)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Ala A:155 - Pro A:156   [ RasMol ]  
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    Gly B:312 - Pro B:313   [ RasMol ]  
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 Related Entries

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        HEMH_HUMAN | P22830: 1hrk 2hrc 2hre 2pnj 2po5 2po7 2qd1 2qd2 2qd3 2qd4 2qd5 3aqi 3hcn 3hco 3hcp 3hcr 3w1w 4kla 4klc 4klr 4kmm 4mk4

(-) Related Entries Specified in the PDB File

4f4g