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(-) Description

Title :  STRUCTURAL COMPARISON OF THE OXIDIZED TERNARY ELECTRON TRANSFER COMPLEX OF METHYLAMINE DEHYDROGENASE, AMICYANIN AND CYTOCHROME C551I FROM PARACOCCUS DENITRIFICANS WITH THE SUBSTRATE-REDUCED, COPPER FREE COMPLEX AT 1.9 A RESOLUTION.
 
Authors :  Z. Chen, R. Durley, V. L. Davidson, F. S. Mathews
Date :  13 Mar 06  (Deposition) - 28 Nov 06  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P
Biol. Unit 1:  A,B,C,D  (1x)
Biol. Unit 2:  E,F,G,H  (1x)
Biol. Unit 3:  I,J,K,L  (1x)
Biol. Unit 4:  M,N,O,P  (1x)
Keywords :  Electron Transfer, Methylamine Dehydrogenase, Cytochrome, Blue Copper Protein, Oxidoreductase, Electron Transport (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  Z. Chen, R. Durley, V. L. Davidson, F. S. Mathews
Structural Comparison Of The Oxidized Ternary Electron Transfer Complex Of Methylamine Dehydrogenase, Amicyanin And Cytochrome C551I From Paracoccus Denitrificans With The Substrate-Reduced, Copper Free Complex At 1. 9 A Resolution.
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - METHYLAMINE DEHYDROGENASE HEAVY CHAIN
    ChainsA, E, I, M
    EC Number1.4.99.3
    Organism ScientificPARACOCCUS DENITRIFICANS
    Organism Taxid266
    SynonymMADH
 
Molecule 2 - METHYLAMINE DEHYDROGENASE LIGHT CHAIN
    ChainsB, F, J, N
    EC Number1.4.99.3
    Organism ScientificPARACOCCUS DENITRIFICANS
    Organism Taxid266
    SynonymMADH
 
Molecule 3 - AMICYANIN
    ChainsC, G, K, O
    Organism ScientificPARACOCCUS DENITRIFICANS
    Organism Taxid266
 
Molecule 4 - CYTOCHROME C-L
    ChainsD, H, L, P
    Organism ScientificPARACOCCUS DENITRIFICANS
    Organism Taxid266
    SynonymCYTOCHROME C551I, CYTOCHROME C552

 Structural Features

(-) Chains, Units

  12345678910111213141516
Asymmetric Unit ABCDEFGHIJKLMNOP
Biological Unit 1 (1x)ABCD            
Biological Unit 2 (1x)    EFGH        
Biological Unit 3 (1x)        IJKL    
Biological Unit 4 (1x)            MNOP

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 16)

Asymmetric Unit (4, 16)
No.NameCountTypeFull Name
1CU4Ligand/IonCOPPER (II) ION
2HEM4Ligand/IonPROTOPORPHYRIN IX CONTAINING FE
3NA4Ligand/IonSODIUM ION
4TRQ4Mod. Amino Acid2-AMINO-3-(6,7-DIOXO-6,7-DIHYDRO-1H-INDOL-3-YL)-PROPIONIC ACID
Biological Unit 1 (2, 2)
No.NameCountTypeFull Name
1CU-1Ligand/IonCOPPER (II) ION
2HEM1Ligand/IonPROTOPORPHYRIN IX CONTAINING FE
3NA-1Ligand/IonSODIUM ION
4TRQ1Mod. Amino Acid2-AMINO-3-(6,7-DIOXO-6,7-DIHYDRO-1H-INDOL-3-YL)-PROPIONIC ACID
Biological Unit 2 (2, 2)
No.NameCountTypeFull Name
1CU-1Ligand/IonCOPPER (II) ION
2HEM1Ligand/IonPROTOPORPHYRIN IX CONTAINING FE
3NA-1Ligand/IonSODIUM ION
4TRQ1Mod. Amino Acid2-AMINO-3-(6,7-DIOXO-6,7-DIHYDRO-1H-INDOL-3-YL)-PROPIONIC ACID
Biological Unit 3 (2, 2)
No.NameCountTypeFull Name
1CU-1Ligand/IonCOPPER (II) ION
2HEM1Ligand/IonPROTOPORPHYRIN IX CONTAINING FE
3NA-1Ligand/IonSODIUM ION
4TRQ1Mod. Amino Acid2-AMINO-3-(6,7-DIOXO-6,7-DIHYDRO-1H-INDOL-3-YL)-PROPIONIC ACID
Biological Unit 4 (2, 2)
No.NameCountTypeFull Name
1CU-1Ligand/IonCOPPER (II) ION
2HEM1Ligand/IonPROTOPORPHYRIN IX CONTAINING FE
3NA-1Ligand/IonSODIUM ION
4TRQ1Mod. Amino Acid2-AMINO-3-(6,7-DIOXO-6,7-DIHYDRO-1H-INDOL-3-YL)-PROPIONIC ACID

(-) Sites  (12, 12)

Asymmetric Unit (12, 12)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHIS G:53 , CYS G:92 , HIS G:95 , MET G:98BINDING SITE FOR RESIDUE CU G 107
02AC2SOFTWAREHIS K:53 , CYS K:92 , HIS K:95 , MET K:98BINDING SITE FOR RESIDUE CU K 107
03AC3SOFTWAREHIS O:53 , CYS O:92 , HIS O:95 , MET O:98BINDING SITE FOR RESIDUE CU O 107
04AC4SOFTWAREHIS C:53 , CYS C:92 , HIS C:95 , MET C:98BINDING SITE FOR RESIDUE CU C 107
05AC5SOFTWAREGLU K:31 , GLY L:72 , ASP L:75 , TYR L:77 , HOH L:1056 , HOH L:1513BINDING SITE FOR RESIDUE NA L 601
06AC6SOFTWAREGLU O:31 , GLY P:72 , ASP P:75 , TYR P:77 , HOH P:1246 , HOH P:1495 , HOH P:2138BINDING SITE FOR RESIDUE NA P 602
07AC7SOFTWAREGLU G:31 , GLY H:72 , ASP H:75 , TYR H:77 , HOH H:1083 , HOH H:1553 , HOH H:1763BINDING SITE FOR RESIDUE NA H 603
08AC8SOFTWAREHOH C:2139 , GLY D:72 , ASP D:75 , TYR D:77 , HOH D:1001 , HOH D:2053 , HOH D:2140BINDING SITE FOR RESIDUE NA D 604
09AC9SOFTWAREMET H:56 , CYS H:57 , CYS H:60 , HIS H:61 , PRO H:71 , LEU H:73 , TRP H:78 , THR H:79 , TYR H:80 , ASN H:83 , LEU H:89 , LEU H:93 , ALA H:97 , THR H:98 , GLN H:100 , MET H:101 , HOH H:1763BINDING SITE FOR RESIDUE HEM H 200
10BC1SOFTWAREMET L:56 , CYS L:57 , CYS L:60 , HIS L:61 , PRO L:71 , LEU L:73 , TRP L:78 , THR L:79 , TYR L:80 , ASN L:83 , LEU L:89 , ALA L:97 , THR L:98 , GLN L:100 , MET L:101 , HOH L:1513BINDING SITE FOR RESIDUE HEM L 200
11BC2SOFTWAREMET D:56 , CYS D:57 , CYS D:60 , HIS D:61 , PRO D:71 , LEU D:73 , TRP D:78 , THR D:79 , TYR D:80 , ASN D:83 , LEU D:89 , LEU D:93 , ALA D:97 , THR D:98 , GLN D:100 , MET D:101 , HOH D:2053BINDING SITE FOR RESIDUE HEM D 200
12BC3SOFTWAREMET P:56 , CYS P:57 , CYS P:60 , HIS P:61 , PRO P:71 , LEU P:73 , TRP P:78 , THR P:79 , TYR P:80 , ASN P:83 , LEU P:93 , ALA P:97 , THR P:98 , GLN P:100 , MET P:101 , HOH P:2138BINDING SITE FOR RESIDUE HEM P 200

(-) SS Bonds  (28, 28)

Asymmetric Unit
No.Residues
1A:181 -A:196
2B:23 -B:88
3B:29 -B:61
4B:36 -B:121
5B:38 -B:86
6B:46 -B:77
7B:78 -B:109
8E:181 -E:196
9F:23 -F:88
10F:29 -F:61
11F:36 -F:121
12F:38 -F:86
13F:46 -F:77
14F:78 -F:109
15I:181 -I:196
16J:23 -J:88
17J:29 -J:61
18J:36 -J:121
19J:38 -J:86
20J:46 -J:77
21J:78 -J:109
22M:181 -M:196
23N:23 -N:88
24N:29 -N:61
25N:36 -N:121
26N:38 -N:86
27N:46 -N:77
28N:78 -N:109

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Ser A:157 -Pro A:158
2Ser E:157 -Pro E:158
3Ser I:157 -Pro I:158
4Ser M:157 -Pro M:158

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2GC4)

(-) PROSITE Motifs  (2, 8)

Asymmetric Unit (2, 8)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1CYTCPS51007 Cytochrome c family profile.CYCL_PARDE52-146
 
 
 
  4D:30-124
H:30-124
L:30-124
P:30-124
2COPPER_BLUEPS00196 Type-1 copper (blue) proteins signature.AMCY_PARDE111-124
 
 
 
  4C:85-98
G:85-98
K:85-98
O:85-98
Biological Unit 1 (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1CYTCPS51007 Cytochrome c family profile.CYCL_PARDE52-146
 
 
 
  1D:30-124
-
-
-
2COPPER_BLUEPS00196 Type-1 copper (blue) proteins signature.AMCY_PARDE111-124
 
 
 
  1C:85-98
-
-
-
Biological Unit 2 (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1CYTCPS51007 Cytochrome c family profile.CYCL_PARDE52-146
 
 
 
  1-
H:30-124
-
-
2COPPER_BLUEPS00196 Type-1 copper (blue) proteins signature.AMCY_PARDE111-124
 
 
 
  1-
G:85-98
-
-
Biological Unit 3 (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1CYTCPS51007 Cytochrome c family profile.CYCL_PARDE52-146
 
 
 
  1-
-
L:30-124
-
2COPPER_BLUEPS00196 Type-1 copper (blue) proteins signature.AMCY_PARDE111-124
 
 
 
  1-
-
K:85-98
-
Biological Unit 4 (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1CYTCPS51007 Cytochrome c family profile.CYCL_PARDE52-146
 
 
 
  1-
-
-
P:30-124
2COPPER_BLUEPS00196 Type-1 copper (blue) proteins signature.AMCY_PARDE111-124
 
 
 
  1-
-
-
O:85-98

(-) Exons   (0, 0)

(no "Exon" information available for 2GC4)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:382
 aligned with DHMH_PARDE | P29894 from UniProtKB/Swiss-Prot  Length:417

    Alignment length:382
                                    45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415  
           DHMH_PARDE    36 EAETQAQETQGQAAARAAAADLAAGQDDEPRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRLLVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTADMG 417
               SCOP domains d2gc4a_ A: automated matches                                                                                                                                                                                                                                                                                                                                                                   SCOP domains
               CATH domains 2gc4A00 A:5-386 YVTN repeat-like/Quinoprotein amine dehydrogenase                                                                                                                                                                                                                                                                                                                              CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhh.................eeeeeehhhhh..eeeeeee....eeeeeeee....eeee......eeeeeeeeee..eeeeeeeeeee......eeeeeee..........hhh.eee.....eeeeee.....eeeeee....eeeeeee...eeeeeeee..eeeeee....eeeee.......eeee...............eee....eeeee....eeeeee......ee...ee..hhhhhhh.eee.....eeee....eeeeeeee.........eeeeeeee.....eeeeeeeeeee.eeee......eeeeee....eeeeee.....eeeee........eeee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2gc4 A   5 EAETQAQETQGQAAARAAAADLAAGQDDEPRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTADMG 386
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384  

Chain B from PDB  Type:PROTEIN  Length:125
 aligned with DHML_PARDE | P22619 from UniProtKB/Swiss-Prot  Length:188

    Alignment length:125
                                    73        83        93       103       113       123       133       143       153       163       173       183     
           DHML_PARDE    64 TDPRAKWVPQDNDIQACDYWRHCSIDGNICDCSGGSLTNCPPGTKLATASWVASCYNPTDGQSYLIAYRDCCGYNVSGRCPCLNTEGELPVYRPEFANDIIWCFGAEDDAMTYHCTISPIVGKAS 188
               SCOP domains d2gc4b_ B: automated matches                                                                                                  SCOP domains
               CATH domains 2gc4B00 B:7-131 Electron Transport Ethylamine Dehydrogenase                                                                   CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..................hhhhh..eee.hhhhh..........ee....eeeeeee....eeeeeee.eee........eee.........hhhhh........hhhhh..eeee...eeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------- Transcript
                 2gc4 B   7 TDPRAKWVPQDNDIQACDYWRHCSIDGNICDCSGGSLTNCPPGTKLATASwVASCYNPTDGQSYLIAYRDCCGYNVSGRCPCLNTEGELPVYRPEFANDIIWCFGAEDDAMTYHCTISPIVGKAS 131
                                    16        26        36        46        56|       66        76        86        96       106       116       126     
                                                                             57-TRQ                                                                      

Chain C from PDB  Type:PROTEIN  Length:105
 aligned with AMCY_PARDE | P22364 from UniProtKB/Swiss-Prot  Length:131

    Alignment length:105
                                    36        46        56        66        76        86        96       106       116       126     
           AMCY_PARDE    27 DKATIPSESPFAAAEVADGAIVVDIAKMKYETPELHVKVGDTVTWINREAMPHNVHFVAGVLGEAALKGPMMKKEQAYSLTFTEAGTYDYHCTPHPFMRGKVVVE 131
               SCOP domains d2gc4c_ C: Amicyanin                                                                                      SCOP domains
               CATH domains 2gc4C00 C:1-105 Cupredoxins -  blue copper proteins                                                       CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee......ee.hhh....eeeeee..ee...eeee....eeeeee........ee.........ee.......eeeeeee...eeeeeee..eeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ------------------------------------------------------------------------------------COPPER_BLUE   ------- PROSITE (2)
                 Transcript --------------------------------------------------------------------------------------------------------- Transcript
                 2gc4 C   1 DKATIPSESPFAAAEVADGAIVVDIAKMKYETPELHVKVGDTVTWINREAMPHNVHFVAGVLGEAALKGPMMKKEQAYSLTFTEAGTYDYHCTPHPFMRGKVVVE 105
                                    10        20        30        40        50        60        70        80        90       100     

Chain D from PDB  Type:PROTEIN  Length:147
 aligned with CYCL_PARDE | P29899 from UniProtKB/Swiss-Prot  Length:177

    Alignment length:147
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       
           CYCL_PARDE    23 APQFFNIIDGSPLNFDDAMEEGRDTEAVKHFLETGENVYNEDPEILPEAEELYAGMCSGCHGHYAEGKIGPGLNDAYWTYPGNETDVGLFSTLYGGATGQMGPMWGSLTLDEMLRTMAWVRHLYTGDPKDASWLTDEQKAGFTPFQP 169
               SCOP domains d2gc4d_ D: Cytochrome c551                                                                                                                          SCOP domains
               CATH domains 2gc4D00 D:1-147 Cytochrome c                                                                                                                        CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............hhhhh......hhhhhhhhhhh.........hhhhhhhhhhhhhhhhhh.................hhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhh...hhhhh...hhhhhhh...... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------CYTC  PDB: D:30-124 UniProt: 52-146                                                            ----------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2gc4 D   1 APQFFNIIDGSPLNFDDAMEEGRDTEAVKHFLETGENVYNEDPEILPEAEELYAGMCSGCHGHYAEGKIGPGLNDAYWTYPGNETDVGLFSTLYGGATGQMGPMWGSLTLDEMLRTMAWVRHLYTGDPKDASWLTDEQKAGFTPFQP 147
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       

Chain E from PDB  Type:PROTEIN  Length:382
 aligned with DHMH_PARDE | P29894 from UniProtKB/Swiss-Prot  Length:417

    Alignment length:382
                                    45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415  
           DHMH_PARDE    36 EAETQAQETQGQAAARAAAADLAAGQDDEPRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRLLVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTADMG 417
               SCOP domains d2gc4e_ E: automated matches                                                                                                                                                                                                                                                                                                                                                                   SCOP domains
               CATH domains 2gc4E00 E:5-386 YVTN repeat-like/Quinoprotein amine dehydrogenase                                                                                                                                                                                                                                                                                                                              CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhh.................eeeeeehhhhh..eeeeeee....eeeeeeee....eeee......eeeeeeeeee..eeeeeeeeeee......eeeeeee..........hhh.eee.....eeeeee.....eeeeee....eeeeeee...eeeeeeee..eeeeee....eeeee.......eeee...............eee....eeeee....eeeeee......ee...ee..hhhhhhh.eee.....eeee....eeeeeeee.........eeeeeeee.....eeeeeeeeeee.eeee......eeeeee....eeeeee.....eeeee........eee..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2gc4 E   5 EAETQAQETQGQAAARAAAADLAAGQDDEPRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTADMG 386
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384  

Chain F from PDB  Type:PROTEIN  Length:125
 aligned with DHML_PARDE | P22619 from UniProtKB/Swiss-Prot  Length:188

    Alignment length:125
                                    73        83        93       103       113       123       133       143       153       163       173       183     
           DHML_PARDE    64 TDPRAKWVPQDNDIQACDYWRHCSIDGNICDCSGGSLTNCPPGTKLATASWVASCYNPTDGQSYLIAYRDCCGYNVSGRCPCLNTEGELPVYRPEFANDIIWCFGAEDDAMTYHCTISPIVGKAS 188
               SCOP domains d2gc4f_ F: automated matches                                                                                                  SCOP domains
               CATH domains 2gc4F00 F:7-131 Electron Transport Ethylamine Dehydrogenase                                                                   CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..................hhhhh..eee.hhhhh..........ee....eeeeeee....eeeeeee.eee........eee.........hhhhh........hhhhh..eeee...eeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------- Transcript
                 2gc4 F   7 TDPRAKWVPQDNDIQACDYWRHCSIDGNICDCSGGSLTNCPPGTKLATASwVASCYNPTDGQSYLIAYRDCCGYNVSGRCPCLNTEGELPVYRPEFANDIIWCFGAEDDAMTYHCTISPIVGKAS 131
                                    16        26        36        46        56|       66        76        86        96       106       116       126     
                                                                             57-TRQ                                                                      

Chain G from PDB  Type:PROTEIN  Length:105
 aligned with AMCY_PARDE | P22364 from UniProtKB/Swiss-Prot  Length:131

    Alignment length:105
                                    36        46        56        66        76        86        96       106       116       126     
           AMCY_PARDE    27 DKATIPSESPFAAAEVADGAIVVDIAKMKYETPELHVKVGDTVTWINREAMPHNVHFVAGVLGEAALKGPMMKKEQAYSLTFTEAGTYDYHCTPHPFMRGKVVVE 131
               SCOP domains d2gc4g_ G: Amicyanin                                                                                      SCOP domains
               CATH domains 2gc4G00 G:1-105 Cupredoxins -  blue copper proteins                                                       CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee......ee.hhh....eeeeee..ee...eeee....eeeeee........ee.........ee.......eeeeeee...eeeeeee..eeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ------------------------------------------------------------------------------------COPPER_BLUE   ------- PROSITE (2)
                 Transcript --------------------------------------------------------------------------------------------------------- Transcript
                 2gc4 G   1 DKATIPSESPFAAAEVADGAIVVDIAKMKYETPELHVKVGDTVTWINREAMPHNVHFVAGVLGEAALKGPMMKKEQAYSLTFTEAGTYDYHCTPHPFMRGKVVVE 105
                                    10        20        30        40        50        60        70        80        90       100     

Chain H from PDB  Type:PROTEIN  Length:147
 aligned with CYCL_PARDE | P29899 from UniProtKB/Swiss-Prot  Length:177

    Alignment length:147
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       
           CYCL_PARDE    23 APQFFNIIDGSPLNFDDAMEEGRDTEAVKHFLETGENVYNEDPEILPEAEELYAGMCSGCHGHYAEGKIGPGLNDAYWTYPGNETDVGLFSTLYGGATGQMGPMWGSLTLDEMLRTMAWVRHLYTGDPKDASWLTDEQKAGFTPFQP 169
               SCOP domains d2gc4h_ H: Cytochrome c551                                                                                                                          SCOP domains
               CATH domains 2gc4H00 H:1-147 Cytochrome c                                                                                                                        CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........................hhhhhhhhhhh.........hhhhhhhhhhhhhhhhhh.................hhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhh...hhhhh...hhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------CYTC  PDB: H:30-124 UniProt: 52-146                                                            ----------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2gc4 H   1 APQFFNIIDGSPLNFDDAMEEGRDTEAVKHFLETGENVYNEDPEILPEAEELYAGMCSGCHGHYAEGKIGPGLNDAYWTYPGNETDVGLFSTLYGGATGQMGPMWGSLTLDEMLRTMAWVRHLYTGDPKDASWLTDEQKAGFTPFQP 147
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       

Chain I from PDB  Type:PROTEIN  Length:382
 aligned with DHMH_PARDE | P29894 from UniProtKB/Swiss-Prot  Length:417

    Alignment length:382
                                    45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415  
           DHMH_PARDE    36 EAETQAQETQGQAAARAAAADLAAGQDDEPRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRLLVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTADMG 417
               SCOP domains d2gc4i_ I: automated matches                                                                                                                                                                                                                                                                                                                                                                   SCOP domains
               CATH domains 2gc4I00 I:5-386 YVTN repeat-like/Quinoprotein amine dehydrogenase                                                                                                                                                                                                                                                                                                                              CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhh.................eeeeeehhhhh..eeeeeee....eeeeeeee....eeee......eeeeeeeeee..eeeeeeeeeee......eeeeeee..........hhh.eee.....eeeeee.....eeeeee....eeeeeee...eeeeeeee..eeeeee....eeeee.......eeee...............eee....eeeee....eeeeee......ee...ee..hhhhhhh.eee.....eeee....eeeeeeee.........eeeeeeee.....eeeeeeeeeee.eeee......eeeeee....eeeeee.....eeeee........eee..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2gc4 I   5 EAETQAQETQGQAAARAAAADLAAGQDDEPRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTADMG 386
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384  

Chain J from PDB  Type:PROTEIN  Length:125
 aligned with DHML_PARDE | P22619 from UniProtKB/Swiss-Prot  Length:188

    Alignment length:125
                                    73        83        93       103       113       123       133       143       153       163       173       183     
           DHML_PARDE    64 TDPRAKWVPQDNDIQACDYWRHCSIDGNICDCSGGSLTNCPPGTKLATASWVASCYNPTDGQSYLIAYRDCCGYNVSGRCPCLNTEGELPVYRPEFANDIIWCFGAEDDAMTYHCTISPIVGKAS 188
               SCOP domains d2gc4j_ J: automated matches                                                                                                  SCOP domains
               CATH domains 2gc4J00 J:7-131 Electron Transport Ethylamine Dehydrogenase                                                                   CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..................hhhhh..eee.hhhhh..........ee....eeeeeee....eeeeeee.eee........eee.........hhhhh........hhhhh..eeee...eeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------- Transcript
                 2gc4 J   7 TDPRAKWVPQDNDIQACDYWRHCSIDGNICDCSGGSLTNCPPGTKLATASwVASCYNPTDGQSYLIAYRDCCGYNVSGRCPCLNTEGELPVYRPEFANDIIWCFGAEDDAMTYHCTISPIVGKAS 131
                                    16        26        36        46        56|       66        76        86        96       106       116       126     
                                                                             57-TRQ                                                                      

Chain K from PDB  Type:PROTEIN  Length:105
 aligned with AMCY_PARDE | P22364 from UniProtKB/Swiss-Prot  Length:131

    Alignment length:105
                                    36        46        56        66        76        86        96       106       116       126     
           AMCY_PARDE    27 DKATIPSESPFAAAEVADGAIVVDIAKMKYETPELHVKVGDTVTWINREAMPHNVHFVAGVLGEAALKGPMMKKEQAYSLTFTEAGTYDYHCTPHPFMRGKVVVE 131
               SCOP domains d2gc4k_ K: Amicyanin                                                                                      SCOP domains
               CATH domains 2gc4K00 K:1-105 Cupredoxins -  blue copper proteins                                                       CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee......ee.hhh....eeeeee..ee...eeee....eeeeee........ee.........ee.......eeeeeee...eeeeeee..eeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ------------------------------------------------------------------------------------COPPER_BLUE   ------- PROSITE (2)
                 Transcript --------------------------------------------------------------------------------------------------------- Transcript
                 2gc4 K   1 DKATIPSESPFAAAEVADGAIVVDIAKMKYETPELHVKVGDTVTWINREAMPHNVHFVAGVLGEAALKGPMMKKEQAYSLTFTEAGTYDYHCTPHPFMRGKVVVE 105
                                    10        20        30        40        50        60        70        80        90       100     

Chain L from PDB  Type:PROTEIN  Length:147
 aligned with CYCL_PARDE | P29899 from UniProtKB/Swiss-Prot  Length:177

    Alignment length:147
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       
           CYCL_PARDE    23 APQFFNIIDGSPLNFDDAMEEGRDTEAVKHFLETGENVYNEDPEILPEAEELYAGMCSGCHGHYAEGKIGPGLNDAYWTYPGNETDVGLFSTLYGGATGQMGPMWGSLTLDEMLRTMAWVRHLYTGDPKDASWLTDEQKAGFTPFQP 169
               SCOP domains d2gc4l_ L: Cytochrome c551                                                                                                                          SCOP domains
               CATH domains 2gc4L00 L:1-147 Cytochrome c                                                                                                                        CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............hhhhh......hhhhhhhhhhh.........hhhhhhhhhhhhhhhhhh.................hhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhh...hhhhh...hhhhhhh...... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------CYTC  PDB: L:30-124 UniProt: 52-146                                                            ----------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2gc4 L   1 APQFFNIIDGSPLNFDDAMEEGRDTEAVKHFLETGENVYNEDPEILPEAEELYAGMCSGCHGHYAEGKIGPGLNDAYWTYPGNETDVGLFSTLYGGATGQMGPMWGSLTLDEMLRTMAWVRHLYTGDPKDASWLTDEQKAGFTPFQP 147
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       

Chain M from PDB  Type:PROTEIN  Length:382
 aligned with DHMH_PARDE | P29894 from UniProtKB/Swiss-Prot  Length:417

    Alignment length:382
                                    45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415  
           DHMH_PARDE    36 EAETQAQETQGQAAARAAAADLAAGQDDEPRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRLLVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTADMG 417
               SCOP domains d2gc4m_ M: automated matches                                                                                                                                                                                                                                                                                                                                                                   SCOP domains
               CATH domains 2gc4M00 M:5-386 YVTN repeat-like/Quinoprotein amine dehydrogenase                                                                                                                                                                                                                                                                                                                              CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhh.................eeeeeehhhhh..eeeeeee....eeeeeeee....eeee......eeeeeeeeee..eeeeeeeeeee......eeeeeee..........hhh.eee.....eeeeee.....eeeeee....eeeeeee...eeeeeeee..eeeeee....eeeee.......eeee...............eee....eeeee....eeeeee......ee...ee..hhhhhhh.eee.....eeee....eeeeeeee.........eeeeeeee.....eeeeeeeeeee.eeee......eeeeee....eeeeee.....eeeee........eee..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2gc4 M   5 EAETQAQETQGQAAARAAAADLAAGQDDEPRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTADMG 386
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384  

Chain N from PDB  Type:PROTEIN  Length:125
 aligned with DHML_PARDE | P22619 from UniProtKB/Swiss-Prot  Length:188

    Alignment length:125
                                    73        83        93       103       113       123       133       143       153       163       173       183     
           DHML_PARDE    64 TDPRAKWVPQDNDIQACDYWRHCSIDGNICDCSGGSLTNCPPGTKLATASWVASCYNPTDGQSYLIAYRDCCGYNVSGRCPCLNTEGELPVYRPEFANDIIWCFGAEDDAMTYHCTISPIVGKAS 188
               SCOP domains d2gc4n_ N: automated matches                                                                                                  SCOP domains
               CATH domains 2gc4N00 N:7-131 Electron Transport Ethylamine Dehydrogenase                                                                   CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..................hhhhh..eee.hhhhh..........ee....eeeeeee....eeeeeee.eee........eee.........hhhhh........hhhhh..eeee...eeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------- Transcript
                 2gc4 N   7 TDPRAKWVPQDNDIQACDYWRHCSIDGNICDCSGGSLTNCPPGTKLATASwVASCYNPTDGQSYLIAYRDCCGYNVSGRCPCLNTEGELPVYRPEFANDIIWCFGAEDDAMTYHCTISPIVGKAS 131
                                    16        26        36        46        56|       66        76        86        96       106       116       126     
                                                                             57-TRQ                                                                      

Chain O from PDB  Type:PROTEIN  Length:105
 aligned with AMCY_PARDE | P22364 from UniProtKB/Swiss-Prot  Length:131

    Alignment length:105
                                    36        46        56        66        76        86        96       106       116       126     
           AMCY_PARDE    27 DKATIPSESPFAAAEVADGAIVVDIAKMKYETPELHVKVGDTVTWINREAMPHNVHFVAGVLGEAALKGPMMKKEQAYSLTFTEAGTYDYHCTPHPFMRGKVVVE 131
               SCOP domains d2gc4o_ O: Amicyanin                                                                                      SCOP domains
               CATH domains 2gc4O00 O:1-105 Cupredoxins -  blue copper proteins                                                       CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee......ee.hhh.....eeeee..ee...eeeee...eeeeee........ee.........ee.......eeeeeee...eeeeeee..eeeeeeeeeee Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ------------------------------------------------------------------------------------COPPER_BLUE   ------- PROSITE (2)
                 Transcript --------------------------------------------------------------------------------------------------------- Transcript
                 2gc4 O   1 DKATIPSESPFAAAEVADGAIVVDIAKMKYETPELHVKVGDTVTWINREAMPHNVHFVAGVLGEAALKGPMMKKEQAYSLTFTEAGTYDYHCTPHPFMRGKVVVE 105
                                    10        20        30        40        50        60        70        80        90       100     

Chain P from PDB  Type:PROTEIN  Length:147
 aligned with CYCL_PARDE | P29899 from UniProtKB/Swiss-Prot  Length:177

    Alignment length:147
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       
           CYCL_PARDE    23 APQFFNIIDGSPLNFDDAMEEGRDTEAVKHFLETGENVYNEDPEILPEAEELYAGMCSGCHGHYAEGKIGPGLNDAYWTYPGNETDVGLFSTLYGGATGQMGPMWGSLTLDEMLRTMAWVRHLYTGDPKDASWLTDEQKAGFTPFQP 169
               SCOP domains d2gc4p_ P: Cytochrome c551                                                                                                                          SCOP domains
               CATH domains 2gc4P00 P:1-147 Cytochrome c                                                                                                                        CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........................hhhhhhhhhhh.........hhhhhhhhhhhhhhhhhh.................hhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhh...hhhhh...hhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------CYTC  PDB: P:30-124 UniProt: 52-146                                                            ----------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2gc4 P   1 APQFFNIIDGSPLNFDDAMEEGRDTEAVKHFLETGENVYNEDPEILPEAEELYAGMCSGCHGHYAEGKIGPGLNDAYWTYPGNETDVGLFSTLYGGATGQMGPMWGSLTLDEMLRTMAWVRHLYTGDPKDASWLTDEQKAGFTPFQP 147
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (4, 16)

Asymmetric Unit

(-) CATH Domains  (4, 16)

Asymmetric Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2GC4)

(-) Gene Ontology  (15, 26)

Asymmetric Unit(hide GO term definitions)
Chain A,E,I,M   (DHMH_PARDE | P29894)
molecular function
    GO:0030058    amine dehydrogenase activity    Catalysis of the reaction: R-CH2-NH2 + H2O + acceptor = R-CHO + NH3 + reduced acceptor.
    GO:0052876    methylamine dehydrogenase (amicyanin) activity    Catalysis of the reaction: methylamine + H2O + amicyanin = formaldehyde + ammonia + reduced amicyanin.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
    GO:0030416    methylamine metabolic process    The chemical reactions and pathways involving methylamine (CH3NH2).
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
    GO:0042597    periplasmic space    The region between the inner (cytoplasmic) and outer membrane (Gram-negative Bacteria) or cytoplasmic membrane and cell wall (Fungi and Gram-positive Bacteria).

Chain B,F,J,N   (DHML_PARDE | P22619)
molecular function
    GO:0030058    amine dehydrogenase activity    Catalysis of the reaction: R-CH2-NH2 + H2O + acceptor = R-CHO + NH3 + reduced acceptor.
    GO:0052876    methylamine dehydrogenase (amicyanin) activity    Catalysis of the reaction: methylamine + H2O + amicyanin = formaldehyde + ammonia + reduced amicyanin.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0016638    oxidoreductase activity, acting on the CH-NH2 group of donors    Catalysis of an oxidation-reduction (redox) reaction in which a CH-NH2 group acts as a hydrogen or electron donor and reduces a hydrogen or electron acceptor.
biological process
    GO:0009308    amine metabolic process    The chemical reactions and pathways involving any organic compound that is weakly basic in character and contains an amino or a substituted amino group. Amines are called primary, secondary, or tertiary according to whether one, two, or three carbon atoms are attached to the nitrogen atom.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
    GO:0030288    outer membrane-bounded periplasmic space    The region between the inner (cytoplasmic or plasma) membrane and outer membrane of organisms with two membranes such as Gram negative bacteria. These periplasmic spaces are relatively thick and contain a thin peptidoglycan layer (PGL), also referred to as a thin cell wall.
    GO:0042597    periplasmic space    The region between the inner (cytoplasmic) and outer membrane (Gram-negative Bacteria) or cytoplasmic membrane and cell wall (Fungi and Gram-positive Bacteria).

Chain C,G,K,O   (AMCY_PARDE | P22364)
molecular function
    GO:0005507    copper ion binding    Interacting selectively and non-covalently with copper (Cu) ions.
    GO:0009055    electron carrier activity    Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
biological process
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
    GO:0042597    periplasmic space    The region between the inner (cytoplasmic) and outer membrane (Gram-negative Bacteria) or cytoplasmic membrane and cell wall (Fungi and Gram-positive Bacteria).

Chain D,H,L,P   (CYCL_PARDE | P29899)
molecular function
    GO:0009055    electron carrier activity    Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
    GO:0020037    heme binding    Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring.
    GO:0005506    iron ion binding    Interacting selectively and non-covalently with iron (Fe) ions.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
biological process
    GO:0015945    methanol metabolic process    The chemical reactions and pathways involving methanol, CH3-OH, a colorless, flammable, mobile, poisonous liquid, widely used as a solvent.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
    GO:0042597    periplasmic space    The region between the inner (cytoplasmic) and outer membrane (Gram-negative Bacteria) or cytoplasmic membrane and cell wall (Fungi and Gram-positive Bacteria).

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  1.4.99.3
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  AMCY_PARDE | P22364
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  CYCL_PARDE | P29899
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  DHMH_PARDE | P29894
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  DHML_PARDE | P22619
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        AMCY_PARDE | P223641aac 1aaj 1aan 1bxa 1mda 1mg2 1mg3 1sf3 1sf5 1sfd 1sfh 1t5k 2gb2 2gba 2gc7 2idq 2ids 2idt 2idu 2j55 2j56 2j57 2mta 2ov0 2qdv 2qdw 2rac 3ie9 3iea 3l45 3ply 3rym 4p5r 4p5s
        CYCL_PARDE | P298991mg2 1mg3 2gc7 2mta
        DHMH_PARDE | P298941mg2 1mg3 2bbk 2gc7 2j55 2j56 2j57 2mta
        DHML_PARDE | P226191mg2 1mg3 2bbk 2gc7 2j55 2j56 2j57 2mta 3l4m 3l4o 3orv 3pxs 3pxt 3pxw 3rlm 3rmz 3rn0 3sjl 3sle 3svw 3sws 3sxt 4fa1 4fa4 4fa5 4fa9 4fan 4fav 4fb1 4k3i 4y5r

(-) Related Entries Specified in the PDB File

2gc7
2mta STRUCTURE OF AN ELECTRON TRANSFER COMPLEX: METHYLAMINE DEHYDROGENASE, AMICYANIN, AND CYTOCHROME C551I