3PXS - JenaLib

Asym./Biol. Unit (Jmol Viewer)

Asym./Biol. Unit - sites (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF DIFERROUS MAUG IN COMPLEX WITH PRE-METHYLAMINE DEHYDROGENASE:

Authors :   E. T. Yukl, B. R Goblirsch

Date :   10 Dec 10 (Deposition) - 23 Mar 11 (Release) - 20 Apr 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.22

Chains :   Asym./Biol. Unit : A,B,C,D,E,F

Keywords :   Oxidoreductase, Electron Transport, Periplasmic Space, Oxidoreductase-Electron Transport Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   E. T. Yukl, B. R. Goblirsch, V. L. Davidson, C. M. Wilmot
Crystal Structures Of Co And No Adducts Of Maug In Complex With Pre-Methylamine Dehydrogenase: Implications For The Mechanism Of Dioxygen Activation.
Biochemistry V. 50 2931 2011
PubMed-ID: 21355604 | Reference-DOI: 10.1021/BI200023N

Molecule 1 - METHYLAMINE UTILIZATION PROTEIN MAUG
	Chains	:	A, B
	EC Number	:	1.-.-.-
	Engineered	:	YES
	Expression System	:	PARACOCCUS DENITRIFICANS
	Expression System Taxid	:	318586
	Fragment	:	UNP RESIDUES 21-387
	Gene	:	MAUG, PDEN_4736
	Organism Scientific	:	PARACOCCUS DENITRIFICANS
	Organism Taxid	:	318586
	Strain	:	PD 1222

Molecule 2 - METHYLAMINE DEHYDROGENASE LIGHT CHAIN
	Chains	:	C, E
	EC Number	:	1.4.99.3
	Engineered	:	YES
	Expression System	:	RHODOBACTER SPHAEROIDES
	Expression System Taxid	:	1063
	Fragment	:	UNP RESIDUES 58-188
	Gene	:	MAUA
	Organism Scientific	:	PARACOCCUS DENITRIFICANS
	Organism Taxid	:	318586
	Strain	:	PD 1222
	Synonym	:	MADH

Molecule 3 - METHYLAMINE DEHYDROGENASE HEAVY CHAIN
	Chains	:	D, F
	EC Number	:	1.4.99.3
	Engineered	:	YES
	Expression System	:	RHODOBACTER SPHAEROIDES
	Expression System Taxid	:	1063
	Fragment	:	UNP RESIDUES 32-417
	Gene	:	MAUB
	Organism Scientific	:	PARACOCCUS DENITRIFICANS
	Organism Taxid	:	318586
	Strain	:	PD 1222
	Synonym	:	MADH

		1	2	3	4	5	6
Asymmetric/Biological Unit	:	A	B	C	D	E	F

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (7, 17)

No.	Name	Count	Type	Full Name
1	0AF	2	Mod. Amino Acid	7-HYDROXY-L-TRYPTOPHAN
2	ACT	3	Ligand/Ion	ACETATE ION
3	CA	2	Ligand/Ion	CALCIUM ION
4	HEC	4	Ligand/Ion	HEME C
5	NA	4	Ligand/Ion	SODIUM ION
6	PG4	1	Ligand/Ion	TETRAETHYLENE GLYCOL
7	PG6	1	Ligand/Ion	1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]-ETHOXY}-ETHANE

Asymmetric Unit (15, 15)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ASN A:231 , THR A:233 , HOH A:418 , HOH A:426 , HOH A:686 , HOH A:808	BINDING SITE FOR RESIDUE NA A 374
02	AC2	SOFTWARE	LEU A:250 , ARG A:252 , ILE A:255 , HOH A:727 , HOH A:973 , HOH A:1052	BINDING SITE FOR RESIDUE NA A 375
03	AC3	SOFTWARE	GLN A:29 , SER A:30 , CYS A:31 , CYS A:34 , HIS A:35 , VAL A:55 , ARG A:65 , THR A:67 , PRO A:68 , LEU A:70 , GLN A:91 , PHE A:92 , TRP A:93 , ARG A:96 , LEU A:100 , GLN A:103 , ALA A:104 , PRO A:107 , GLU A:113 , MET A:114 , GLN A:163 , LYS A:265 , HOH A:452	BINDING SITE FOR RESIDUE HEC A 500
04	AC4	SOFTWARE	ASN A:200 , CYS A:201 , CYS A:204 , HIS A:205 , HIS A:224 , LEU A:228 , PHE A:264 , PRO A:267 , LEU A:269 , MET A:279 , HIS A:280 , LEU A:287 , TYR A:294 , SER A:324 , HOH A:386 , HOH A:415 , HOH A:434 , HOH A:436 , HOH A:448	BINDING SITE FOR RESIDUE HEC A 600
05	AC5	SOFTWARE	ASN A:66 , THR A:275 , PRO A:277 , HOH A:386 , HOH A:399 , HOH A:417 , HOH A:434	BINDING SITE FOR RESIDUE CA A 400
06	AC6	SOFTWARE	ASN B:231 , THR B:233 , HOH B:391 , HOH B:888 , HOH B:944 , HOH B:945	BINDING SITE FOR RESIDUE NA B 374
07	AC7	SOFTWARE	LEU B:250 , ARG B:252 , ILE B:255 , HOH B:420 , HOH B:713 , HOH B:748	BINDING SITE FOR RESIDUE NA B 375
08	AC8	SOFTWARE	GLN B:29 , SER B:30 , CYS B:31 , CYS B:34 , HIS B:35 , ARG B:65 , THR B:67 , PRO B:68 , LEU B:70 , GLN B:91 , PHE B:92 , TRP B:93 , ARG B:96 , LEU B:100 , GLN B:103 , ALA B:104 , PRO B:107 , GLU B:113 , GLN B:163 , LYS B:265 , HOH B:898 , HOH B:947	BINDING SITE FOR RESIDUE HEC B 500
09	AC9	SOFTWARE	ASN B:200 , CYS B:201 , CYS B:204 , HIS B:205 , HIS B:224 , LEU B:228 , PHE B:264 , PRO B:267 , TYR B:278 , MET B:279 , HIS B:280 , LEU B:287 , TYR B:294 , SER B:324 , HOH B:395 , HOH B:404 , HOH B:436 , HOH B:444 , HOH B:758	BINDING SITE FOR RESIDUE HEC B 600
10	BC1	SOFTWARE	ASN B:66 , THR B:275 , PRO B:277 , HOH B:377 , HOH B:395 , HOH B:404 , HOH B:806	BINDING SITE FOR RESIDUE CA B 400
11	BC2	SOFTWARE	SER C:60 , GLU C:92 , GLY C:93 , TRP D:304	BINDING SITE FOR RESIDUE ACT C 138
12	BC3	SOFTWARE	ARG D:35 , LEU D:37 , GLU D:38	BINDING SITE FOR RESIDUE ACT D 387
13	BC4	SOFTWARE	THR F:187 , GLN F:235 , LYS F:236 , SER F:255	BINDING SITE FOR RESIDUE PG4 F 387
14	BC5	SOFTWARE	ARG A:125 , ASP A:128 , PHE F:261	BINDING SITE FOR RESIDUE PG6 F 388
15	BC6	SOFTWARE	ARG F:35 , GLU F:38 , HOH F:987	BINDING SITE FOR RESIDUE ACT F 389

Asymmetric/Biological Unit

No.	Residues
1	C:23	-	C:88
2	C:29	-	C:61
3	C:36	-	C:121
4	C:38	-	C:86
5	C:46	-	C:77
6	C:78	-	C:109
7	D:181	-	D:196
8	E:23	-	E:88
9	E:29	-	E:61
10	E:36	-	E:121
11	E:38	-	E:86
12	E:46	-	E:77
13	E:78	-	E:109
14	F:181	-	F:196

Asymmetric/Biological Unit

No.	Residues
1	Gly A:276	-	Pro A:277
2	Gly B:276	-	Pro B:277
3	Ser D:157	-	Pro D:158
4	Ser F:157	-	Pro F:158

(no "SAP(SNP)/Variant" information available for 3PXS)

Asymmetric/Biological Unit (1, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	CYTC	PS51007	Cytochrome c family profile.	MAUG_PARDP	29-150 196-370	4	A:9-130 B:9-130 A:176-350 B:176-350

(no "Exon" information available for 3PXS)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:354
 aligned with MAUG_PARDP | Q51658 from UniProtKB/Swiss-Prot  Length:387

    Alignment length:354
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375    
           MAUG_PARDP    26 ADDALAALGAQLFVDPALSRNATQSCATCHDPARAFTDPREGKAGLAVSVGDDGQSHGDRNTPTLGYAALVPAFHRDANGKYKGGQFWDGRADDLKQQAGQPMLNPVEMAMPDRAAVAARLRDDPAYRTGFEALFGKGVLDDPERAFDAAAEALAAYQATGEFSPFDSKYDRVMRGEEKFTPLEEFGYTVFITWNCRLCHMQRKQGVAERETFTNFEYHNIGLPVNETAREASGLGADHVDHGLLARPGIEDPAQSGRFKVPSLRNVAVTGPYMHNGVFTDLRTAILFYNKYTSRRPEAKINPETGAPWGEPEVARNLSLAELQSGLMLDDGRVDALVAFLETLTDRRYEPLLE 379
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhh...............................hhhhh...ee.....ee..........hhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh........hhhhhhhh.....hhhhhhhhhhhhhhhhhhh..................ee......hhhhhhhhh.......hhhhhh....hhhhh..ee.....hhhhh..........hhhhhhhhhhhhh..hhhhhh.................hhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ---CYTC  PDB: A:9-130 UniProt: 29-150                                                                                        ---------------------------------------------CYTC  PDB: A:176-350 UniProt: 196-370                                                                                                                                          --------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3pxs A   6 ADDALAALGAQLFVDPALSRNATQSCATCHDPARAFTDPREGKAGLAVSVGDDGQSHGDRNTPTLGYAALVPAFHRDANGKYKGGQFWDGRADDLKQQAGQPMLNPVEMAMPDRAAVAARLRDDPAYRTGFEALFGKGVLDDPERAFDAAAEALAAYQATGEFSPFDSKYDRVMRGEEKFTPLEEFGYTVFITWNCRLCHMQRKQGVAERETFTNFEYHNIGLPVNETAREASGLGADHVDHGLLARPGIEDPAQSGRFKVPSLRNVAVTGPYMHNGVFTDLRTAILFYNKYTSRRPEAKINPETGAPWGEPEVARNLSLAELQSGLMLDDGRVDALVAFLETLTDRRYEPLLE 359
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355

Chain B from PDB  Type:PROTEIN  Length:355
 aligned with MAUG_PARDP | Q51658 from UniProtKB/Swiss-Prot  Length:387

    Alignment length:355
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375     
           MAUG_PARDP    26 ADDALAALGAQLFVDPALSRNATQSCATCHDPARAFTDPREGKAGLAVSVGDDGQSHGDRNTPTLGYAALVPAFHRDANGKYKGGQFWDGRADDLKQQAGQPMLNPVEMAMPDRAAVAARLRDDPAYRTGFEALFGKGVLDDPERAFDAAAEALAAYQATGEFSPFDSKYDRVMRGEEKFTPLEEFGYTVFITWNCRLCHMQRKQGVAERETFTNFEYHNIGLPVNETAREASGLGADHVDHGLLARPGIEDPAQSGRFKVPSLRNVAVTGPYMHNGVFTDLRTAILFYNKYTSRRPEAKINPETGAPWGEPEVARNLSLAELQSGLMLDDGRVDALVAFLETLTDRRYEPLLEE 380
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) -CCP_MauG-3pxsB01 B:7-186                                                                                                                                                            ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains (1)
           Pfam domains (2) -CCP_MauG-3pxsB02 B:7-186                                                                                                                                                            ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains (2)
         Sec.struct. author hhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhh...............................hhhhh...ee.....ee..........hhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh........hhhhhhhh.....hhhhhhhhhhhhhhhhhhh..................ee......hhhhhhhhh.......hhhhhh....hhhhh..ee.....hhhhh..........hhhhhhhhhhhhh..hhhhhh.................hhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---CYTC  PDB: B:9-130 UniProt: 29-150                                                                                        ---------------------------------------------CYTC  PDB: B:176-350 UniProt: 196-370                                                                                                                                          ---------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3pxs B   6 ADDALAALGAQLFVDPALSRNATQSCATCHDPARAFTDPREGKAGLAVSVGDDGQSHGDRNTPTLGYAALVPAFHRDANGKYKGGQFWDGRADDLKQQAGQPMLNPVEMAMPDRAAVAARLRDDPAYRTGFEALFGKGVLDDPERAFDAAAEALAAYQATGEFSPFDSKYDRVMRGEEKFTPLEEFGYTVFITWNCRLCHMQRKQGVAERETFTNFEYHNIGLPVNETAREASGLGADHVDHGLLARPGIEDPAQSGRFKVPSLRNVAVTGPYMHNGVFTDLRTAILFYNKYTSRRPEAKINPETGAPWGEPEVARNLSLAELQSGLMLDDGRVDALVAFLETLTDRRYEPLLEE 360
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355

Chain C from PDB  Type:PROTEIN  Length:125
 aligned with DHML_PARDE | P22619 from UniProtKB/Swiss-Prot  Length:188

    Alignment length:125
                                    73        83        93       103       113       123       133       143       153       163       173       183     
           DHML_PARDE    64 TDPRAKWVPQDNDIQACDYWRHCSIDGNICDCSGGSLTNCPPGTKLATASWVASCYNPTDGQSYLIAYRDCCGYNVSGRCPCLNTEGELPVYRPEFANDIIWCFGAEDDAMTYHCTISPIVGKAS 188
               SCOP domains d3pxsc_ C: automated matches                                                                                                  SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..................hhhhh..eee.hhhh...........ee....eeeeee......eeeeeeeeee........eee.........hhhhh........hhhhh..eeeee..eeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------- Transcript
                 3pxs C   7 TDPRAKWVPQDNDIQACDYWRHCSIDGNICDCSGGSLTNCPPGTKLATASwVASCYNPTDGQSYLIAYRDCCGYNVSGRCPCLNTEGELPVYRPEFANDIIWCFGAEDDAMTYHCTISPIVGKAS 131
                                    16        26        36        46        56|       66        76        86        96       106       116       126     
                                                                             57-0AF

Chain D from PDB  Type:PROTEIN  Length:376
 aligned with A1BB97_PARDP | A1BB97 from UniProtKB/TrEMBL  Length:417

    Alignment length:376
                                    51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411      
         A1BB97_PARDP    42 QETQGQAAARAAAADLAAGQDDEPRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTADMG 417
               SCOP domains d3pxsd_ D: automated matches                                                                                                                                                                                                                                                                                                                                                             SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhh................eeeeee.......eeeeeee....eeeeeeee....eeee......eeeeeeeeee..eeeeeeeeeee......eeeeeee..........hhh.eee.....eeeeee.....eeeeee....eeeeeee...eeeeeeee..eeeeee....eeeee.......eeee...............eee....eeeee....eeeeee......ee...ee..hhhhhhh.eee.....eeee....eeeeeeee.........eeeeeeee.....eeeeeeeeeee.eeee......eeeeee....eeeeee.....eeeee........eeee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3pxs D  11 QETQGQAAARAAAADLAAGQDDEPRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTADMG 386
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380

Chain E from PDB  Type:PROTEIN  Length:125
 aligned with DHML_PARDE | P22619 from UniProtKB/Swiss-Prot  Length:188

    Alignment length:125
                                    73        83        93       103       113       123       133       143       153       163       173       183     
           DHML_PARDE    64 TDPRAKWVPQDNDIQACDYWRHCSIDGNICDCSGGSLTNCPPGTKLATASWVASCYNPTDGQSYLIAYRDCCGYNVSGRCPCLNTEGELPVYRPEFANDIIWCFGAEDDAMTYHCTISPIVGKAS 188
               SCOP domains d3pxse_ E: automated matches                                                                                                  SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) -Me-amine-dh_L-3pxsE01 E:8-130                                                                                              - Pfam domains (1)
           Pfam domains (2) -Me-amine-dh_L-3pxsE02 E:8-130                                                                                              - Pfam domains (2)
         Sec.struct. author ..................hhhhh..eee.hhhhh..........ee....eeeeee......eeeeeeeeee........eee.........hhhhh........hhhhh..eeeee..eeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------- Transcript
                 3pxs E   7 TDPRAKWVPQDNDIQACDYWRHCSIDGNICDCSGGSLTNCPPGTKLATASwVASCYNPTDGQSYLIAYRDCCGYNVSGRCPCLNTEGELPVYRPEFANDIIWCFGAEDDAMTYHCTISPIVGKAS 131
                                    16        26        36        46        56|       66        76        86        96       106       116       126     
                                                                             57-0AF

Chain F from PDB  Type:PROTEIN  Length:376
 aligned with A1BB97_PARDP | A1BB97 from UniProtKB/TrEMBL  Length:417

    Alignment length:376
                                    51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411      
         A1BB97_PARDP    42 QETQGQAAARAAAADLAAGQDDEPRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTADMG 417
               SCOP domains d3pxsf_ F: automated matches                                                                                                                                                                                                                                                                                                                                                             SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) --------------------------------Me-amine-dh_H-3pxsF01 F:43-384                                                                                                                                                                                                                                                                                                                        -- Pfam domains (1)
           Pfam domains (2) --------------------------------Me-amine-dh_H-3pxsF02 F:43-384                                                                                                                                                                                                                                                                                                                        -- Pfam domains (2)
         Sec.struct. author ..hhhhhhhhhhhhhhhhh................eeeeee.......eeeeeee....eeeeeeee....eeee......eeeeeeeeee..eeeeeeeeeee......eeeeeee..........hhh.eee.....eeeeee.....eeeeee....eeeeeee...eeeeeeee..eeeeee....eeeee.......eeee...............eee....eeeee....eeeeee......ee...ee..hhhhhhh.eee.....eeee....eeeeeeee.........eeeeeeee.....eeeeeeeeeee.eeee......eeeeee....eeeeee.....eeeee........eee..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3pxs F  11 QETQGQAAARAAAADLAAGQDDEPRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTADMG 386
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "CATH Domain" information available for 3PXS)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B (MAUG_PARDP | Q51658)

molecular function
	GO:0009055	electron carrier activity	Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
	GO:0020037	heme binding	Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
	GO:0042597	periplasmic space	The region between the inner (cytoplasmic) and outer membrane (Gram-negative Bacteria) or cytoplasmic membrane and cell wall (Fungi and Gram-positive Bacteria).

Chain C,E (DHML_PARDE | P22619)

molecular function
	GO:0030058	amine dehydrogenase activity	Catalysis of the reaction: R-CH2-NH2 + H2O + acceptor = R-CHO + NH3 + reduced acceptor.
	GO:0052876	methylamine dehydrogenase (amicyanin) activity	Catalysis of the reaction: methylamine + H2O + amicyanin = formaldehyde + ammonia + reduced amicyanin.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
	GO:0016638	oxidoreductase activity, acting on the CH-NH2 group of donors	Catalysis of an oxidation-reduction (redox) reaction in which a CH-NH2 group acts as a hydrogen or electron donor and reduces a hydrogen or electron acceptor.
biological process
	GO:0009308	amine metabolic process	The chemical reactions and pathways involving any organic compound that is weakly basic in character and contains an amino or a substituted amino group. Amines are called primary, secondary, or tertiary according to whether one, two, or three carbon atoms are attached to the nitrogen atom.
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
	GO:0030288	outer membrane-bounded periplasmic space	The region between the inner (cytoplasmic or plasma) membrane and outer membrane of organisms with two membranes such as Gram negative bacteria. These periplasmic spaces are relatively thick and contain a thin peptidoglycan layer (PGL), also referred to as a thin cell wall.
	GO:0042597	periplasmic space	The region between the inner (cytoplasmic) and outer membrane (Gram-negative Bacteria) or cytoplasmic membrane and cell wall (Fungi and Gram-positive Bacteria).

Chain D,F (A1BB97_PARDP | A1BB97)

molecular function
	GO:0030058	amine dehydrogenase activity	Catalysis of the reaction: R-CH2-NH2 + H2O + acceptor = R-CHO + NH3 + reduced acceptor.
	GO:0052876	methylamine dehydrogenase (amicyanin) activity	Catalysis of the reaction: methylamine + H2O + amicyanin = formaldehyde + ammonia + reduced amicyanin.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
	GO:0030416	methylamine metabolic process	The chemical reactions and pathways involving methylamine (CH3NH2).
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
	GO:0042597	periplasmic space	The region between the inner (cytoplasmic) and outer membrane (Gram-negative Bacteria) or cytoplasmic membrane and cell wall (Fungi and Gram-positive Bacteria).

Asymmetric/Biological Unit
	Complete Structure
		Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
		WebMol \| AstexViewer[tm]@PDBe (Java Applets, require no local installation except for Java; loading may be slow)
		STRAP (Java WebStart application, automatic local installation, requires Java; full application with system access!)
		RasMol (require local installation)
		Molscript (VRML) (requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)

	Ligands, Modified Residues, Ions
		0AF	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		ACT	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		CA	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		HEC	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		NA	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		PG4	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		PG6	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]

	Sites
		AC1	[ RasMol ]	+environment [ RasMol ]
		AC2	[ RasMol ]	+environment [ RasMol ]
		AC3	[ RasMol ]	+environment [ RasMol ]
		AC4	[ RasMol ]	+environment [ RasMol ]
		AC5	[ RasMol ]	+environment [ RasMol ]
		AC6	[ RasMol ]	+environment [ RasMol ]
		AC7	[ RasMol ]	+environment [ RasMol ]
		AC8	[ RasMol ]	+environment [ RasMol ]
		AC9	[ RasMol ]	+environment [ RasMol ]
		BC1	[ RasMol ]	+environment [ RasMol ]
		BC2	[ RasMol ]	+environment [ RasMol ]
		BC3	[ RasMol ]	+environment [ RasMol ]
		BC4	[ RasMol ]	+environment [ RasMol ]
		BC5	[ RasMol ]	+environment [ RasMol ]
		BC6	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
		Gly A:276 - Pro A:277	[ RasMol ]
		Gly B:276 - Pro B:277	[ RasMol ]
		Ser D:157 - Pro D:158	[ RasMol ]
		Ser F:157 - Pro F:158	[ RasMol ]

Jmol
	protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick [ Asym./Biol. Unit PNG format \| Asym./Biol. Unit - sites PNG format ](automatic orientation, automatically generated)
Molscript
	protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick [ mono PDF format \| stereo PDF format ](default orientation, automatically generated)

Access by PDB/NDB ID
	3pxs
		Family and Domain Information	:	ProDom \| SYSTERS
		General Structural Information	:	GlycoscienceDB \| MMDB \| NDB \| OCA \| PDB \| PDBe \| PDBj \| PDBsum \| PDBWiki \| PQS \| PROTEOPEDIA
		Orientation in Membranes	:	OPM
		Protein Surface	:	SURFACE
		Secondary Structure	:	DSSP (structure derived) \| HSSP (homology derived)
		Structural Genomics	:	GeneCensus
		Structural Neighbours	:	CE \| VAST
		Structure Classification	:	CATH \| Dali \| SCOP
		Validation and Original Data	:	BMRB Data View \| BMRB Restraints Grid \| EDS \| PROCHECK \| RECOORD \| WHAT_CHECK

Access by UniProt ID/Accession number
	A1BB97_PARDP \| A1BB97
		Comparative Protein Structure Models	:	ModBase
		Genomic Information	:	Ensembl
		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/TrEMBL
	DHML_PARDE \| P22619
		Comparative Protein Structure Models	:	ModBase
		Genomic Information	:	Ensembl
		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/SwissProt
	MAUG_PARDP \| Q51658
		Comparative Protein Structure Models	:	ModBase
		Genomic Information	:	Ensembl
		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/SwissProt

Access by Enzyme Classificator (EC Number)
	1.-.-.-
		General Enzyme Information	:	BRENDA \| EC-PDB \| Enzyme \| IntEnz
		Pathway	:	KEGG \| MetaCyc
	1.4.99.3
		General Enzyme Information	:	BRENDA \| EC-PDB \| Enzyme \| IntEnz
		Pathway	:	KEGG \| MetaCyc

Access by Disease Identifier (MIM ID)
	(no 'MIM ID' available)
		Disease Information	:	OMIM

Access by GenAge ID
	(no 'GenAge ID' available)
		Age Related Information	:	GenAge

Access by PDB/NDB ID
		Domain Information	:	XDom
		Interatomic Contacts of Structural Units	:	CSU
		Ligand-protein Contacts	:	LPC
		Protein Cavities	:	castP
		Sequence and Secondary Structure	:	PDBCartoon
		Structure Alignment	:	STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
		Structure and Sequence Browser	:	STING

Access by UniProt ID/Accession number
	A1BB97_PARDP \| A1BB97
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)
	DHML_PARDE \| P22619
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)
	MAUG_PARDP \| Q51658
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)

3l4m	CRYSTAL STRUCTURE OF RESTING STATE MAUG/PRE-METHYLAMINE DEHYDROGENASE COMPLEX
3l4o
3orv
3pxs
3pxt
3pxw

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (7, 17)

Sites (15, 15)

SS Bonds (14, 14)

Cis Peptide Bonds (4, 4)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 4)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (2, 4)

CATH Domains (0, 0)

Pfam Domains (3, 6)

Gene Ontology (12, 20)

Visualization

Interactive Views

Still Images

Databases and Analysis Tools

Databases

Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File