2J55 - JenaLib

Asym./Biol. Unit (Jmol Viewer)

Asym./Biol. Unit - sites (Jmol Viewer)

Title :   X-RAY REDUCED PARACCOCUS DENITRIFICANS METHYLAMINE DEHYDROGENASE O-QUINONE IN COMPLEX WITH AMICYANIN.

Authors :   A. R. Pearson, R. Pahl, V. L. Davidson, C. M. Wilmot

Date :   12 Sep 06 (Deposition) - 23 Jan 07 (Release) - 18 Mar 15 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.15

Chains :   Asym./Biol. Unit : A,B,H,J,L,M

Keywords :   Oxidoreductase, Transport, Periplasmic, Metal-Binding, Electron Transport, Single Crystal Microspectrophotometry (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. R. Pearson, R. Pahl, E. G. Kovaleva, V. L. Davidson, C. M. Wilmot
Tracking X-Ray-Derived Redox Changes In Crystals Of A Methylamine Dehydrogenase/Amicyanin Complex Using Single-Crystal Uv/Vis Microspectrophotometry.
J. Synchrotron Radiat. V. 14 92 2007
PubMed-ID: 17211075 | Reference-DOI: 10.1107/S0909049506051259
(for further references see the PDB file header)

Molecule 1 - METHYLAMINE DEHYDROGENASE HEAVY CHAIN
	Chains	:	H, J
	EC Number	:	1.4.99.3
	Organism Scientific	:	PARACOCCUS DENITRIFICANS
	Organism Taxid	:	266
	Synonym	:	METHYLAMINE DEHYDROGENASE ALPHA CHAIN, MADH

Molecule 2 - METHYLAMINE DEHYDROGENASE LIGHT CHAIN
	Chains	:	L, M
	EC Number	:	1.4.99.3
	Organism Scientific	:	PARACOCCUS DENITRIFICANS
	Organism Taxid	:	266
	Synonym	:	METHYLAMINE DEHYDROGENASE BETA CHAIN, MADH

Molecule 3 - AMICYANIN
	Chains	:	A, B
	Organism Scientific	:	PARACOCCUS DENITRIFICANS
	Organism Taxid	:	266
	Other Details	:	AMICYANIN IS THE OBLIGATE ELECTRON TRANSFER PARTNER OF METHYLAMINE DEHYDROGENASE.

		1	2	3	4	5	6
Asymmetric/Biological Unit	:	A	B	H	J	L	M

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (3, 8)

No.	Name	Count	Type	Full Name
1	CU	2	Ligand/Ion	COPPER (II) ION
2	GOL	4	Ligand/Ion	GLYCEROL
3	TRQ	2	Mod. Amino Acid	2-AMINO-3-(6,7-DIOXO-6,7-DIHYDRO-1H-INDOL-3-YL)-PROPIONIC ACID

Asymmetric Unit (6, 6)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	HIS A:53 , CYS A:92 , HIS A:95 , MET A:98	BINDING SITE FOR RESIDUE CU A1106
2	AC2	SOFTWARE	HIS B:53 , CYS B:92 , HIS B:95 , MET B:98	BINDING SITE FOR RESIDUE CU B1106
3	AC3	SOFTWARE	PHE H:220 , HIS H:250 , LEU H:262 , ALA H:264 , HOH H:2277	BINDING SITE FOR RESIDUE GOL H1387
4	AC4	SOFTWARE	HIS H:54 , TRP H:282 , GLN H:378 , HOH H:2392 , HOH H:2402 , HOH L:2021	BINDING SITE FOR RESIDUE GOL H1388
5	AC5	SOFTWARE	GLN H:14 , ALA H:18 , ARG H:70 , HOH H:2012 , HOH H:2403 , HOH H:2405 , HOH H:2406 , ASP M:37	BINDING SITE FOR RESIDUE GOL H1389
6	AC6	SOFTWARE	ARG H:305 , CYS L:23 , CYS L:88 , LEU L:89 , ASN L:90 , HOH L:2048 , HOH L:2073 , HOH L:2074 , HOH L:2075	BINDING SITE FOR RESIDUE GOL L1132

Asymmetric/Biological Unit

No.	Residues
1	H:181	-	H:196
2	J:181	-	J:196
3	L:23	-	L:88
4	L:29	-	L:61
5	L:36	-	L:121
6	L:38	-	L:86
7	L:46	-	L:77
8	L:78	-	L:109
9	M:23	-	M:88
10	M:29	-	M:61
11	M:36	-	M:121
12	M:38	-	M:86
13	M:46	-	M:77
14	M:78	-	M:109

Asymmetric/Biological Unit

No.	Residues
1	Ser H:157	-	Pro H:158
2	Thr J:8	-	Gln J:9
3	Ser J:157	-	Pro J:158

(no "SAP(SNP)/Variant" information available for 2J55)

Asymmetric/Biological Unit (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	COPPER_BLUE	PS00196	Type-1 copper (blue) proteins signature.	AMCY_PARDE	111-124	2	A:85-98 B:85-98

(no "Exon" information available for 2J55)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:105
 aligned with AMCY_PARDE | P22364 from UniProtKB/Swiss-Prot  Length:131

    Alignment length:105
                                    36        46        56        66        76        86        96       106       116       126     
           AMCY_PARDE    27 DKATIPSESPFAAAEVADGAIVVDIAKMKYETPELHVKVGDTVTWINREAMPHNVHFVAGVLGEAALKGPMMKKEQAYSLTFTEAGTYDYHCTPHPFMRGKVVVE 131
               SCOP domains d2j55a_ A: Amicyanin                                                                                      SCOP domains
               CATH domains 2j55A00 A:1-105 Cupredoxins -  blue copper proteins                                                       CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee......ee........eeeee.........eee....eeeeee........ee.........ee.......eeeeeee...eeeeee.......eeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------COPPER_BLUE   ------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------- Transcript
                 2j55 A   1 DKATIPSESPFAAAEVADGAIVVDIAKMKYETPELHVKVGDTVTWINREAMPHNVHFVAGVLGEAALKGPMMKKEQAYSLTFTEAGTYDYHCTPHPFMRGKVVVE 105
                                    10        20        30        40        50        60        70        80        90       100

Chain B from PDB  Type:PROTEIN  Length:105
 aligned with AMCY_PARDE | P22364 from UniProtKB/Swiss-Prot  Length:131

    Alignment length:105
                                    36        46        56        66        76        86        96       106       116       126     
           AMCY_PARDE    27 DKATIPSESPFAAAEVADGAIVVDIAKMKYETPELHVKVGDTVTWINREAMPHNVHFVAGVLGEAALKGPMMKKEQAYSLTFTEAGTYDYHCTPHPFMRGKVVVE 131
               SCOP domains d2j55b_ B: Amicyanin                                                                                      SCOP domains
               CATH domains 2j55B00 B:1-105 Cupredoxins -  blue copper proteins                                                       CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee......ee........eeeeee..ee...eeee....eeeeee........ee.........ee.......eeeeeee...eeeeeee..eeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------COPPER_BLUE   ------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------- Transcript
                 2j55 B   1 DKATIPSESPFAAAEVADGAIVVDIAKMKYETPELHVKVGDTVTWINREAMPHNVHFVAGVLGEAALKGPMMKKEQAYSLTFTEAGTYDYHCTPHPFMRGKVVVE 105
                                    10        20        30        40        50        60        70        80        90       100

Chain H from PDB  Type:PROTEIN  Length:382
 aligned with DHMH_PARDE | P29894 from UniProtKB/Swiss-Prot  Length:417

    Alignment length:382
                                    45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415  
           DHMH_PARDE    36 EAETQAQETQGQAAARAAAADLAAGQDDEPRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRLLVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTADMG 417
               SCOP domains d2j55h_ H: automated matches                                                                                                                                                                                                                                                                                                                                                                   SCOP domains
               CATH domains 2j55H00 H:5-386 YVTN repeat-like/Quinoprotein amine dehydrogenase                                                                                                                                                                                                                                                                                                                              CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhh................eeeeee.......eeeeeee....eeeeeeee....eeee......eeeeeeeeee..eeeeeeeeeee......eeeeeee..............eee.....eeeeee.....eeeeee....eeeeeee...eeeeeeee..eeeeee....eeeee.......eeee...............eee....eeeee....eeeeee......ee...ee..hhhhhhh.eee.....eeee....eeeeeeee.........eeeeeeee.....eeeeeeeeeee.eeee......eeeeee....eeeeee.....eeeee........eeee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2j55 H   5 EAETQAQETQGQAAARAAAADLAAGQDDEPRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTADMG 386
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384

Chain J from PDB  Type:PROTEIN  Length:381
 aligned with DHMH_PARDE | P29894 from UniProtKB/Swiss-Prot  Length:417

    Alignment length:381
                                    46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416 
           DHMH_PARDE    37 AETQAQETQGQAAARAAAADLAAGQDDEPRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRLLVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTADMG 417
               SCOP domains d2j55j_ J: automated matches                                                                                                                                                                                                                                                                                                                                                                  SCOP domains
               CATH domains 2j55J00 J:6-386 YVTN repeat-like/Quinoprotein amine dehydrogenase                                                                                                                                                                                                                                                                                                                             CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhh................eeeeee.......eeeeeee....eeeeeeee....eeee......eeeeeeeeee..eeeeeeeeeee......eeeeeee..............eee.....eeeeee.....eeeeee....eeeeeee...eeeeeeee..eeeeee....eeeee.......eeee...............eee....eeeee.....eeeee......ee.......hhhhhhh.eee.....eeee....eeeeeeee.........eeeeeeee.....eeeeeeeeeee.eeee......eeeeee....eeeeee.....eeeee........eeee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2j55 J   6 AETQAQETQGQAAARAAAADLAAGQDDEPRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTADMG 386
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385

Chain L from PDB  Type:PROTEIN  Length:125
 aligned with DHML_PARDE | P22619 from UniProtKB/Swiss-Prot  Length:188

    Alignment length:125
                                    73        83        93       103       113       123       133       143       153       163       173       183     
           DHML_PARDE    64 TDPRAKWVPQDNDIQACDYWRHCSIDGNICDCSGGSLTNCPPGTKLATASWVASCYNPTDGQSYLIAYRDCCGYNVSGRCPCLNTEGELPVYRPEFANDIIWCFGAEDDAMTYHCTISPIVGKAS 188
               SCOP domains d2j55l1 L:7-131 Methylamine dehydrogenase                                                                                     SCOP domains
               CATH domains 2j55L00 L:7-131 Electron Transport Ethylamine Dehydrogenase                                                                   CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...................hhhh..eee.hhhhh..........ee......eeee......eeee...eee........eee.........hhhhh........hhhhh..eeee......... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------- Transcript
                 2j55 L   7 TDPRAKWVPQDNDIQACDYWRHCSIDGNICDCSGGSLTNCPPGTKLATASwVASCYNPTDGQSYLIAYRDCCGYNVSGRCPCLNTEGELPVYRPEFANDIIWCFGAEDDAMTYHCTISPIVGKAS 131
                                    16        26        36        46        56|       66        76        86        96       106       116       126     
                                                                             57-TRQ

Chain M from PDB  Type:PROTEIN  Length:125
 aligned with DHML_PARDE | P22619 from UniProtKB/Swiss-Prot  Length:188

    Alignment length:125
                                    73        83        93       103       113       123       133       143       153       163       173       183     
           DHML_PARDE    64 TDPRAKWVPQDNDIQACDYWRHCSIDGNICDCSGGSLTNCPPGTKLATASWVASCYNPTDGQSYLIAYRDCCGYNVSGRCPCLNTEGELPVYRPEFANDIIWCFGAEDDAMTYHCTISPIVGKAS 188
               SCOP domains d2j55m_ M: automated matches                                                                                                  SCOP domains
               CATH domains 2j55M00 M:7-131 Electron Transport Ethylamine Dehydrogenase                                                                   CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...................hhhh..eee.hhhhh..........ee......eeee......eeee...eee........eee.........hhhhh........hhhhh..eeee...eeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------- Transcript
                 2j55 M   7 TDPRAKWVPQDNDIQACDYWRHCSIDGNICDCSGGSLTNCPPGTKLATASwVASCYNPTDGQSYLIAYRDCCGYNVSGRCPCLNTEGELPVYRPEFANDIIWCFGAEDDAMTYHCTISPIVGKAS 131
                                    16        26        36        46        56|       66        76        86        96       106       116       126     
                                                                             57-TRQ

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "Pfam Domain" information available for 2J55)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B (AMCY_PARDE | P22364)

molecular function
	GO:0005507	copper ion binding	Interacting selectively and non-covalently with copper (Cu) ions.
	GO:0009055	electron carrier activity	Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
biological process
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
	GO:0042597	periplasmic space	The region between the inner (cytoplasmic) and outer membrane (Gram-negative Bacteria) or cytoplasmic membrane and cell wall (Fungi and Gram-positive Bacteria).

Chain H,J (DHMH_PARDE | P29894)

molecular function
	GO:0030058	amine dehydrogenase activity	Catalysis of the reaction: R-CH2-NH2 + H2O + acceptor = R-CHO + NH3 + reduced acceptor.
	GO:0052876	methylamine dehydrogenase (amicyanin) activity	Catalysis of the reaction: methylamine + H2O + amicyanin = formaldehyde + ammonia + reduced amicyanin.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
	GO:0030416	methylamine metabolic process	The chemical reactions and pathways involving methylamine (CH3NH2).
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
	GO:0042597	periplasmic space	The region between the inner (cytoplasmic) and outer membrane (Gram-negative Bacteria) or cytoplasmic membrane and cell wall (Fungi and Gram-positive Bacteria).

Chain L,M (DHML_PARDE | P22619)

molecular function
	GO:0030058	amine dehydrogenase activity	Catalysis of the reaction: R-CH2-NH2 + H2O + acceptor = R-CHO + NH3 + reduced acceptor.
	GO:0052876	methylamine dehydrogenase (amicyanin) activity	Catalysis of the reaction: methylamine + H2O + amicyanin = formaldehyde + ammonia + reduced amicyanin.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
	GO:0016638	oxidoreductase activity, acting on the CH-NH2 group of donors	Catalysis of an oxidation-reduction (redox) reaction in which a CH-NH2 group acts as a hydrogen or electron donor and reduces a hydrogen or electron acceptor.
biological process
	GO:0009308	amine metabolic process	The chemical reactions and pathways involving any organic compound that is weakly basic in character and contains an amino or a substituted amino group. Amines are called primary, secondary, or tertiary according to whether one, two, or three carbon atoms are attached to the nitrogen atom.
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
	GO:0030288	outer membrane-bounded periplasmic space	The region between the inner (cytoplasmic or plasma) membrane and outer membrane of organisms with two membranes such as Gram negative bacteria. These periplasmic spaces are relatively thick and contain a thin peptidoglycan layer (PGL), also referred to as a thin cell wall.
	GO:0042597	periplasmic space	The region between the inner (cytoplasmic) and outer membrane (Gram-negative Bacteria) or cytoplasmic membrane and cell wall (Fungi and Gram-positive Bacteria).

Asymmetric/Biological Unit
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	Cis Peptide Bonds
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		Ser J:157 - Pro J:158	[ RasMol ]
		Thr J:8 - Gln J:9	[ RasMol ]

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	2j55
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	AMCY_PARDE \| P22364
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	DHMH_PARDE \| P29894
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	DHML_PARDE \| P22619
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	1.4.99.3
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	DHML_PARDE \| P22619
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1aac	AMICYANIN OXIDIZED, 1.31 ANGSTROMS
1aaj	AMICYANIN (APO FORM)
1aan	AMICYANIN
1bxa	AMICYANIN REDUCED, PH 4.4, 1.3 ANGSTROMS
1mda	METHYLAMINE DEHYDROGENASE COMPLEX WITH AMICYANIN
1mg2	MUTATION OF ALPHA PHE55 OF METHYLAMINE DEHYDROGENASE ALTERSTHE REORGANIZATION ENERGY AND ELECTRONIC COUPLING FOR ITSELECTRON TRANSFER REACTION WITH AMICYANIN
1mg3	MUTATION OF ALPHA PHE55 OF METHYLAMINE DEHYDROGENASE ALTERSTHE REORGANIZATION ENERGY AND ELECTRONIC COUPLING FOR ITSELECTRON TRANSFER REACTION WITH AMICYANIN
1sf3	STRUCTURE OF THE REDUCED FORM OF THE P94A MUTANT OFAMICYANIN
1sf5	STRUCTURE OF OXIDIZED STATE OF THE P94A MUTANT OF AMICYANIN
1sfd	OXIDIZED FORM OF AMICYANIN MUTANT P94F
1sfh	REDUCED STATE OF AMICYANIN MUTANT P94F
1t5k	CRYSTAL STRUCTURE OF AMICYANIN SUBSTITUTED WITH COBALT
2bbk	METHYLAMINE DEHYDROGENASE (MADH)
2j56	X-RAY REDUCED PARACCOCUS DENITRIFICANS METHYLAMINE DEHYDROGENASE N-SEMIQUINONE IN COMPLEX WITH AMICYANIN.
2j57	X-RAY REDUCED PARACCOCUS DENITRIFICANS METHYLAMINE DEHYDROGENASE N-QUINOL IN COMPLEX WITH AMICYANIN.
2mta	METHYLAMINE DEHYDROGENASE COMPLEX WITH AMICYANIN AND CYTOCHROME C551I
2rac	AMICYANIN REDUCED, PH 7.7, 1.3 ANGSTROMS

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 8)

Sites (6, 6)

SS Bonds (14, 14)

Cis Peptide Bonds (3, 3)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 2)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (4, 6)

CATH Domains (3, 6)

Pfam Domains (0, 0)

Gene Ontology (12, 19)

Visualization

Interactive Views

Still Images

Databases and Analysis Tools

Databases

Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File