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(-) Description

Title :  CRYSTAL STRUCTURE OF TRANSLATION ELONGATION FACTOR SELB FROM METHANOCOCCUS MARIPALUDIS, APO FORM
 
Authors :  M. Leibundgut, C. Frick, M. Thanbichler, A. Boeck, N. Ban
Date :  14 Dec 11  (Deposition) - 07 Nov 12  (Release) - 07 Nov 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.15
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Keywords :  Selenocysteine, Translation, Secis Element, Ef-Sec, Sec-Trna(Sec) (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Leibundgut, C. Frick, M. Thanbichler, A. Bock, N. Ban
Selenocysteine Trna-Specific Elongation Factor Selb Is A Structural Chimaera Of Elongation And Initiation Factors.
Embo J. V. 24 11 2005
PubMed-ID: 15616587  |  Reference-DOI: 10.1038/SJ.EMBOJ.7600505

(-) Compounds

Molecule 1 - TRANSLATION ELONGATION FACTOR SELB
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PT7-7
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Variant: ROSETTA
    Expression System Vector Type: PLASMID
    Organism Scientific: METHANOCOCCUS MARIPALUDIS
    Organism Taxid: 39152
    Other Details: GERMAN COLLECTION OF MICROORGANISMS (DSM 2067)
    Strain: JJ
    Synonym: MJ0495-LIKE PROTEIN

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A   
Biological Unit 2 (1x):  B  
Biological Unit 3 (1x):   C 
Biological Unit 4 (1x):    D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 31)

Asymmetric Unit (4, 31)
No.NameCountTypeFull Name
15GP1Ligand/IonGUANOSINE-5'-MONOPHOSPHATE
2CMH16Mod. Amino AcidS-(METHYLMERCURY)-L-CYSTEINE
3DXC7Ligand/Ion(3ALPHA,5BETA,12ALPHA)-3,12-DIHYDROXYCHOLAN-24-OIC ACID
4SO47Ligand/IonSULFATE ION
Biological Unit 1 (1, 4)
No.NameCountTypeFull Name
15GP-1Ligand/IonGUANOSINE-5'-MONOPHOSPHATE
2CMH4Mod. Amino AcidS-(METHYLMERCURY)-L-CYSTEINE
3DXC-1Ligand/Ion(3ALPHA,5BETA,12ALPHA)-3,12-DIHYDROXYCHOLAN-24-OIC ACID
4SO4-1Ligand/IonSULFATE ION
Biological Unit 2 (4, 8)
No.NameCountTypeFull Name
15GP1Ligand/IonGUANOSINE-5'-MONOPHOSPHATE
2CMH4Mod. Amino AcidS-(METHYLMERCURY)-L-CYSTEINE
3DXC1Ligand/Ion(3ALPHA,5BETA,12ALPHA)-3,12-DIHYDROXYCHOLAN-24-OIC ACID
4SO42Ligand/IonSULFATE ION
Biological Unit 3 (3, 15)
No.NameCountTypeFull Name
15GP-1Ligand/IonGUANOSINE-5'-MONOPHOSPHATE
2CMH4Mod. Amino AcidS-(METHYLMERCURY)-L-CYSTEINE
3DXC6Ligand/Ion(3ALPHA,5BETA,12ALPHA)-3,12-DIHYDROXYCHOLAN-24-OIC ACID
4SO45Ligand/IonSULFATE ION
Biological Unit 4 (1, 4)
No.NameCountTypeFull Name
15GP-1Ligand/IonGUANOSINE-5'-MONOPHOSPHATE
2CMH4Mod. Amino AcidS-(METHYLMERCURY)-L-CYSTEINE
3DXC-1Ligand/Ion(3ALPHA,5BETA,12ALPHA)-3,12-DIHYDROXYCHOLAN-24-OIC ACID
4SO4-1Ligand/IonSULFATE ION

(-) Sites  (15, 15)

Asymmetric Unit (15, 15)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREARG B:74 , ARG B:262 , ARG C:43BINDING SITE FOR RESIDUE SO4 B1471
02AC2SOFTWARELYS B:197 , GLY B:198 , LYS C:55BINDING SITE FOR RESIDUE SO4 B1472
03AC3SOFTWAREILE B:47 , ASP B:48 , ILE B:49 , GLY B:50 , PHE B:51 , VAL B:202 , GLN B:233 , ARG C:-2 , PRO C:195 , DXC C:1476BINDING SITE FOR RESIDUE DXC B1473
04AC4SOFTWAREARG A:230 , SER A:238 , PRO B:96 , LYS B:97 , THR B:98 , MET B:104 , LEU B:105 , ILE B:139 , THR B:143 , ILE B:288BINDING SITE FOR RESIDUE 5GP B1474
05AC5SOFTWAREASP C:108 , HIS C:109 , LYS C:284 , SER C:286 , ASP C:287 , SO4 C:1472BINDING SITE FOR RESIDUE SO4 C1471
06AC6SOFTWAREHIS C:144 , LYS C:147 , ASP C:287 , SO4 C:1471BINDING SITE FOR RESIDUE SO4 C1472
07AC7SOFTWAREARG C:465BINDING SITE FOR RESIDUE SO4 C1473
08AC8SOFTWAREHIS C:13 , LYS C:97 , THR C:98 , GLN C:99BINDING SITE FOR RESIDUE SO4 C1474
09AC9SOFTWAREPRO B:195 , ILE B:196 , ILE C:47 , ILE C:49 , GLY C:50 , PHE C:51 , VAL C:202 , GLN C:233BINDING SITE FOR RESIDUE DXC C1475
10BC1SOFTWAREILE B:196 , DXC B:1473 , ARG C:-2 , PRO C:-1 , HIS C:0 , MET C:1 , ILE C:196 , ALA C:199 , ARG C:230 , SER C:231BINDING SITE FOR RESIDUE DXC C1476
11BC2SOFTWAREPRO C:96 , THR C:98 , GLY C:101 , ARG C:131 , ILE C:139 , LYS C:290 , LEU C:368BINDING SITE FOR RESIDUE DXC C1477
12BC3SOFTWARESER C:121 , ASP C:122 , ALA C:124 , THR C:126 , THR C:158 , PHE C:160 , LEU C:392 , ARG C:393 , GLU C:394 , GLU C:427BINDING SITE FOR RESIDUE DXC C1478
13BC4SOFTWARETHR C:126 , GLU C:133 , LEU C:392 , SER C:425 , ASN C:462BINDING SITE FOR RESIDUE DXC C1479
14BC5SOFTWAREARG C:131 , ILE C:135 , SER C:138 , LYS C:290 , GLU C:331BINDING SITE FOR RESIDUE DXC C1480
15BC6SOFTWAREGLU C:331BINDING SITE FOR RESIDUE SO4 C1481

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4ACA)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Leu A:221 -Pro A:222
2Leu B:221 -Pro B:222
3Leu C:221 -Pro C:222
4Leu D:221 -Pro D:222

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4ACA)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4ACA)

(-) Exons   (0, 0)

(no "Exon" information available for 4ACA)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:448
 aligned with Q8J307_METMI | Q8J307 from UniProtKB/TrEMBL  Length:468

    Alignment length:469
                             1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459         
         Q8J307_METMI     - -MDFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTLNNAEIIRNTESYFKMPLDHAFPIKGAGTVVTGTINKGIVKVGDELKVLPINMSTKVRSIQYFKESVMEAKAGDRVGMAIQGVDAKQIYRGCILTSKDTKLQTVDKIVAKIKISDIFKYNLTPKMKVHLNVGMLIVPAVAVPFKKVTFGKTEENIILNEVISGNECYCAFELEEKVLAEVGDRVLITRLDLPPTTLRICGHGLIEEFKPIKDLNIKKEVLREGKVKIDKGRTVIDGLAQSKVAAEKLIGEEISIEGKDIVGKIKGTFGTKGLLTAEFSGNVENRDKVILNRLRRWG 468
               SCOP domains -d4acaa4 A:1-179 Elongation f                     actor SelB, N-terminal domain                                                                                                     d4acaa1 A:180-271 Elongation factor SelB, domains 2 and 4                                   d4acaa3 A:272-387 Elongation factor SelB, domain 3                                                                  --d4acaa2 A:390-468 Elongation factor SelB, domains 2 and 4                       SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeeee....hhhhhhhhhhh.---------------------...eeee..eeeeee...hhhhhhhhhhhhh....eeeeeee.....hhhhhhhhhhhhhh...eeeeeehhhhhhhhhhhhhhhhhhhhhh.........eee.......hhhhhhhhhhhhhhhh..........eee...eee.....eeeeee....eee...eeeee...eeeeeeeee....ee.eee...eeeeeee...........eee......eeeeeeeeeee............eeeeeee..eeeeeeeeeeeeee...................eeeeeeeeeeee....eeeee..........eeeeeeeee..hhhhhh.eeeeeeeeeeeee..eeeee....hhhhhhh....eeee.....eeeeeeee....eeeeee.......eeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4aca A   0 HMDFKNINLGIFGHIDHGKTTLSKVLTEI---------------------GFSAFKLENYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTLNNAEIIRNTESYFKMPLDHAFPIKGAGTVVTGTINKGIVKVGDELKVLPINMSTKVRSIQYFKESVMEAKAGDRVGMAIQGVDAKQIYRGcILTSKDTKLQTVDKIVAKIKISDIFKYNLTPKMKVHLNVGMLIVPAVAVPFKKVTFGKTEENIILNEVISGNEcYcAFELEEKVLAEVGDRVLITRLDLPPTTLRIcGHGLIEEFKPIKDLNIKKEVLREGKVKIDKGRTVIDGLAQSKVAAEKLIGEEISIEGKDIVGKIKGTFGTKGLLTAEFSGNVENRDKVILNRLRRWG 468
                                     9        19        |-         -         -|       59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259    |  269       279       289       299       309       319       329       339|      349       359       369 |     379       389       399       409       419       429       439       449       459         
                                                       28                    50                                                                                                                                                                                                                   264-CMH                                                                   338-CMH                          371-CMH                                                                                             
                                                                                                                                                                                                                                                                                                                                                                              340-CMH                                                                                                                            


Chain B from PDB  Type:PROTEIN  Length:456
 aligned with Q8J307_METMI | Q8J307 from UniProtKB/TrEMBL  Length:468

    Alignment length:468
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460        
         Q8J307_METMI     1 MDFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTLNNAEIIRNTESYFKMPLDHAFPIKGAGTVVTGTINKGIVKVGDELKVLPINMSTKVRSIQYFKESVMEAKAGDRVGMAIQGVDAKQIYRGCILTSKDTKLQTVDKIVAKIKISDIFKYNLTPKMKVHLNVGMLIVPAVAVPFKKVTFGKTEENIILNEVISGNECYCAFELEEKVLAEVGDRVLITRLDLPPTTLRICGHGLIEEFKPIKDLNIKKEVLREGKVKIDKGRTVIDGLAQSKVAAEKLIGEEISIEGKDIVGKIKGTFGTKGLLTAEFSGNVENRDKVILNRLRRWG 468
               SCOP domains d4acab4 B:1-179 Elongation fa            ctor SelB, N-terminal domain                                                                                                              d4acab1 B:180-271 Elongation factor SelB, domains 2 and 4                                   d4acab3 B:272-387 Elongation factor SelB, domain 3                                                                  --d4acab2 B:390-468 Elongation factor SelB, domains 2 and 4                       SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeeeeeee....hhhhhhhhhhhhh------------...........eeee..eeeeee...hhhhhhhhhhhhh....eeeeeee.....hhhhhhhhhhhhhh...eeeeeehhhhhhhhhhhhhhhhhhhhhh.........eee.......hhhhhhhhhhhhhhh...........eeeeeeeeee...eeeeeee....eee...eeeee...eeeeeeeeee..eee.eee...eeeeeee..hhhhh....eeee.....eeeeeeeeeeee.hhhh.......eeeeee..eeeeeeeeeeeeeee..eeeee...........eeeeeeeeeeee....eeeee............eeeeeee..hhhhh.eeeeeeeeeeeeee..eeeee....hhhhhhhhh..eeee....eeeeeeeee....eeeeee.......eeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4aca B   1 MDFKNINLGIFGHIDHGKTTLSKVLTEIA------------KRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTLNNAEIIRNTESYFKMPLDHAFPIKGAGTVVTGTINKGIVKVGDELKVLPINMSTKVRSIQYFKESVMEAKAGDRVGMAIQGVDAKQIYRGcILTSKDTKLQTVDKIVAKIKISDIFKYNLTPKMKVHLNVGMLIVPAVAVPFKKVTFGKTEENIILNEVISGNEcYcAFELEEKVLAEVGDRVLITRLDLPPTTLRIcGHGLIEEFKPIKDLNIKKEVLREGKVKIDKGRTVIDGLAQSKVAAEKLIGEEISIEGKDIVGKIKGTFGTKGLLTAEFSGNVENRDKVILNRLRRWG 468
                                    10        20        |-         - |      50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260   |   270       280       290       300       310       320       330       340       350       360       370|      380       390       400       410       420       430       440       450       460        
                                                       29           42                                                                                                                                                                                                                           264-CMH                                                                   338-CMH                          371-CMH                                                                                             
                                                                                                                                                                                                                                                                                                                                                                             340-CMH                                                                                                                            


Chain C from PDB  Type:PROTEIN  Length:471
 aligned with Q8J307_METMI | Q8J307 from UniProtKB/TrEMBL  Length:468

    Alignment length:471
                               1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   
                               |     7        17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467 
         Q8J307_METMI     - ---MDFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTLNNAEIIRNTESYFKMPLDHAFPIKGAGTVVTGTINKGIVKVGDELKVLPINMSTKVRSIQYFKESVMEAKAGDRVGMAIQGVDAKQIYRGCILTSKDTKLQTVDKIVAKIKISDIFKYNLTPKMKVHLNVGMLIVPAVAVPFKKVTFGKTEENIILNEVISGNECYCAFELEEKVLAEVGDRVLITRLDLPPTTLRICGHGLIEEFKPIKDLNIKKEVLREGKVKIDKGRTVIDGLAQSKVAAEKLIGEEISIEGKDIVGKIKGTFGTKGLLTAEFSGNVENRDKVILNRLRRWG 468
               SCOP domains ---d4acac4 C:1-179 Elongation factor SelB, N-terminal domain                                                                                                                          d4acac1 C:180-271 Elongation factor SelB, domains 2 and 4                                   d4acac3 C:272-387 Elongation factor SelB, domain 3                                                                  --d4acac2 C:390-468 Elongation factor SelB, domains 2 and 4                       SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeeeeeee....hhhhhhhhhhh.........................eeee..eeeeee...hhhhhhhhhhhhh..eeeeeeeee.....hhhhhhhhhhhhhh...eeeeeehhhhhhhhhhhhhhhhhhhhhh.........eee.......hhhhhhhhhhhhhhhh..........eeeeeeeeee...eeeeeee....eee...eeeee...eeeeeeeeee...ee.eee...eeeeeee..hhhhh....eee......eeeeeeeeeeee...........eeeeeee..eeeeeeeeeeeeee....eeeee........eeeeeeeeeeeeee....eeeee..........eeeeeeeee...hhhh.eeeeeeeeeeeeee..eeeee....hhhhhhhhh..eeee.....eeeeeeee....eeeeeee.......eeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4aca C  -2 RPHMDFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTLNNAEIIRNTESYFKMPLDHAFPIKGAGTVVTGTINKGIVKVGDELKVLPINMSTKVRSIQYFKESVMEAKAGDRVGMAIQGVDAKQIYRGcILTSKDTKLQTVDKIVAKIKISDIFKYNLTPKMKVHLNVGMLIVPAVAVPFKKVTFGKTEENIILNEVISGNEcYcAFELEEKVLAEVGDRVLITRLDLPPTTLRIcGHGLIEEFKPIKDLNIKKEVLREGKVKIDKGRTVIDGLAQSKVAAEKLIGEEISIEGKDIVGKIKGTFGTKGLLTAEFSGNVENRDKVILNRLRRWG 468
                                     7        17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257      |267       277       287       297       307       317       327       337| |    347       357       367   |   377       387       397       407       417       427       437       447       457       467 
                                                                                                                                                                                                                                                                                                    264-CMH                                                                   338-CMH                          371-CMH                                                                                             
                                                                                                                                                                                                                                                                                                                                                                                340-CMH                                                                                                                            


Chain D from PDB  Type:PROTEIN  Length:467
 aligned with Q8J307_METMI | Q8J307 from UniProtKB/TrEMBL  Length:468

    Alignment length:467
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       
         Q8J307_METMI     2 DFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTLNNAEIIRNTESYFKMPLDHAFPIKGAGTVVTGTINKGIVKVGDELKVLPINMSTKVRSIQYFKESVMEAKAGDRVGMAIQGVDAKQIYRGCILTSKDTKLQTVDKIVAKIKISDIFKYNLTPKMKVHLNVGMLIVPAVAVPFKKVTFGKTEENIILNEVISGNECYCAFELEEKVLAEVGDRVLITRLDLPPTTLRICGHGLIEEFKPIKDLNIKKEVLREGKVKIDKGRTVIDGLAQSKVAAEKLIGEEISIEGKDIVGKIKGTFGTKGLLTAEFSGNVENRDKVILNRLRRWG 468
               SCOP domains d4acad4 D:2-179 Elongation factor SelB, N-terminal domain                                                                                                                         d4acad1 D:180-271 Elongation factor SelB, domains 2 and 4                                   d4acad3 D:272-387 Elongation factor SelB, domain 3                                                                  --d4acad2 D:390-468 Elongation factor SelB, domains 2 and 4                       SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeee..hhhhhhhhhhhhhhhh..eee..................eeee..eeeee...............hhhhh.eeeeeee.....hhhhhhhhhhhhhh...eeeeee.....hhhhhhhhhhhhhhhhh.........eee.......hhhhhhhhhhhhhhhh..........eee..eeeee...eeeeeee....eee...eeeee...eeeeeeeeee..ee..eee...eeeeeee...........eee......eeeeeeeeeee............eeeeeee..eeeeeeeeeeeeeee..eeeeee..........eeeeeeeeeeee....eeeeee........eeeeeeeeee.........eeeeeeeeeeeee..eeeee....hhhhhhh....eeee.....eeeeeeee....eeeeee.......eeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4aca D   2 DFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTLNNAEIIRNTESYFKMPLDHAFPIKGAGTVVTGTINKGIVKVGDELKVLPINMSTKVRSIQYFKESVMEAKAGDRVGMAIQGVDAKQIYRGcILTSKDTKLQTVDKIVAKIKISDIFKYNLTPKMKVHLNVGMLIVPAVAVPFKKVTFGKTEENIILNEVISGNEcYcAFELEEKVLAEVGDRVLITRLDLPPTTLRIcGHGLIEEFKPIKDLNIKKEVLREGKVKIDKGRTVIDGLAQSKVAAEKLIGEEISIEGKDIVGKIKGTFGTKGLLTAEFSGNVENRDKVILNRLRRWG 468
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261  |    271       281       291       301       311       321       331      |341       351       361       371       381       391       401       411       421       431       441       451       461       
                                                                                                                                                                                                                                                                                                264-CMH                                                                   338-CMH                          371-CMH                                                                                             
                                                                                                                                                                                                                                                                                                                                                                            340-CMH
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (3, 16)

Asymmetric Unit
(-)
Class: All beta proteins (24004)
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0 ; only for superseded entry 1WB2: 3,14)

(no "CATH Domain" information available for 4ACA, only for superseded entry 1WB2 replaced by 4ACA)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4ACA)

(-) Gene Ontology  (6, 6)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (Q8J307_METMI | Q8J307)
molecular function
    GO:0005525    GTP binding    Interacting selectively and non-covalently with GTP, guanosine triphosphate.
    GO:0003924    GTPase activity    Catalysis of the reaction: GTP + H2O = GDP + phosphate.
    GO:0003723    RNA binding    Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
    GO:0003746    translation elongation factor activity    Functions in chain elongation during polypeptide synthesis at the ribosome.
biological process
    GO:0001514    selenocysteine incorporation    The incorporation of selenocysteine into a peptide; uses a special tRNA that recognizes the UGA codon as selenocysteine, rather than as a termination codon. Selenocysteine is synthesized from serine before its incorporation; it is not a posttranslational modification of peptidyl-cysteine.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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 Related Entries

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        Q8J307_METMI | Q8J307: 4ac9 4acb

(-) Related Entries Specified in the PDB File

1wb2 CRYSTAL STRUCTURE OF TRANSLATION ELONGATION FACTOR SELB FROM METHANOCOCCUS MARIPALUDIS, APO FORM
1wb3 CRYSTAL STRUCTURE OF TRANSLATION ELONGATION FACTOR SELB FROM METHANOCOCCUS MARIPALUDIS IN COMPLEX WITH THE GTP ANALOGUE GPPNHP
4ac9 CRYSTAL STRUCTURE OF TRANSLATION ELONGATION FACTOR SELB FROM METHANOCOCCUS MARIPALUDIS IN COMPLEX WITH GDP
4acb CRYSTAL STRUCTURE OF TRANSLATION ELONGATION FACTOR SELB FROM METHANOCOCCUS MARIPALUDIS IN COMPLEX WITH THE GTP ANALOGUE GPPNHP