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4ACA
Biol. Unit 3
Info
Asym.Unit (658 KB)
Biol.Unit 1 (159 KB)
Biol.Unit 2 (163 KB)
Biol.Unit 3 (173 KB)
Biol.Unit 4 (165 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF TRANSLATION ELONGATION FACTOR SELB FROM METHANOCOCCUS MARIPALUDIS, APO FORM
Authors
:
M. Leibundgut, C. Frick, M. Thanbichler, A. Boeck, N. Ban
Date
:
14 Dec 11 (Deposition) - 07 Nov 12 (Release) - 07 Nov 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.15
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Selenocysteine, Translation, Secis Element, Ef-Sec, Sec-Trna(Sec)
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Leibundgut, C. Frick, M. Thanbichler, A. Bock, N. Ban
Selenocysteine Trna-Specific Elongation Factor Selb Is A Structural Chimaera Of Elongation And Initiation Factors.
Embo J. V. 24 11 2005
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Hetero Components
(3, 15)
Info
All Hetero Components
1a: GUANOSINE-5'-MONOPHOSPHATE (5GPa)
2a: S-(METHYLMERCURY)-L-CYSTEINE (CMHa)
2b: S-(METHYLMERCURY)-L-CYSTEINE (CMHb)
2c: S-(METHYLMERCURY)-L-CYSTEINE (CMHc)
2d: S-(METHYLMERCURY)-L-CYSTEINE (CMHd)
2e: S-(METHYLMERCURY)-L-CYSTEINE (CMHe)
2f: S-(METHYLMERCURY)-L-CYSTEINE (CMHf)
2g: S-(METHYLMERCURY)-L-CYSTEINE (CMHg)
2h: S-(METHYLMERCURY)-L-CYSTEINE (CMHh)
2i: S-(METHYLMERCURY)-L-CYSTEINE (CMHi)
2j: S-(METHYLMERCURY)-L-CYSTEINE (CMHj)
2k: S-(METHYLMERCURY)-L-CYSTEINE (CMHk)
2l: S-(METHYLMERCURY)-L-CYSTEINE (CMHl)
2m: S-(METHYLMERCURY)-L-CYSTEINE (CMHm)
2n: S-(METHYLMERCURY)-L-CYSTEINE (CMHn)
2o: S-(METHYLMERCURY)-L-CYSTEINE (CMHo)
2p: S-(METHYLMERCURY)-L-CYSTEINE (CMHp)
3a: (3ALPHA,5BETA,12ALPHA)-3,12-DIHYDR... (DXCa)
3b: (3ALPHA,5BETA,12ALPHA)-3,12-DIHYDR... (DXCb)
3c: (3ALPHA,5BETA,12ALPHA)-3,12-DIHYDR... (DXCc)
3d: (3ALPHA,5BETA,12ALPHA)-3,12-DIHYDR... (DXCd)
3e: (3ALPHA,5BETA,12ALPHA)-3,12-DIHYDR... (DXCe)
3f: (3ALPHA,5BETA,12ALPHA)-3,12-DIHYDR... (DXCf)
3g: (3ALPHA,5BETA,12ALPHA)-3,12-DIHYDR... (DXCg)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
4e: SULFATE ION (SO4e)
4f: SULFATE ION (SO4f)
4g: SULFATE ION (SO4g)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
5GP
-1
Ligand/Ion
GUANOSINE-5'-MONOPHOSPHATE
2
CMH
4
Mod. Amino Acid
S-(METHYLMERCURY)-L-CYSTEINE
3
DXC
6
Ligand/Ion
(3ALPHA,5BETA,12ALPHA)-3,12-DIHYDROXYCHOLAN-24-OIC ACID
4
SO4
5
Ligand/Ion
SULFATE ION
[
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Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC5 (SOFTWARE)
05: AC6 (SOFTWARE)
06: AC7 (SOFTWARE)
07: AC8 (SOFTWARE)
08: AC9 (SOFTWARE)
09: BC1 (SOFTWARE)
10: BC2 (SOFTWARE)
11: BC3 (SOFTWARE)
12: BC4 (SOFTWARE)
13: BC5 (SOFTWARE)
14: BC6 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG B:74 , ARG B:262 , ARG C:43
BINDING SITE FOR RESIDUE SO4 B1471
02
AC2
SOFTWARE
LYS B:197 , GLY B:198 , LYS C:55
BINDING SITE FOR RESIDUE SO4 B1472
03
AC3
SOFTWARE
ILE B:47 , ASP B:48 , ILE B:49 , GLY B:50 , PHE B:51 , VAL B:202 , GLN B:233 , ARG C:-2 , PRO C:195 , DXC C:1476
BINDING SITE FOR RESIDUE DXC B1473
04
AC5
SOFTWARE
ASP C:108 , HIS C:109 , LYS C:284 , SER C:286 , ASP C:287 , SO4 C:1472
BINDING SITE FOR RESIDUE SO4 C1471
05
AC6
SOFTWARE
HIS C:144 , LYS C:147 , ASP C:287 , SO4 C:1471
BINDING SITE FOR RESIDUE SO4 C1472
06
AC7
SOFTWARE
ARG C:465
BINDING SITE FOR RESIDUE SO4 C1473
07
AC8
SOFTWARE
HIS C:13 , LYS C:97 , THR C:98 , GLN C:99
BINDING SITE FOR RESIDUE SO4 C1474
08
AC9
SOFTWARE
PRO B:195 , ILE B:196 , ILE C:47 , ILE C:49 , GLY C:50 , PHE C:51 , VAL C:202 , GLN C:233
BINDING SITE FOR RESIDUE DXC C1475
09
BC1
SOFTWARE
ILE B:196 , DXC B:1473 , ARG C:-2 , PRO C:-1 , HIS C:0 , MET C:1 , ILE C:196 , ALA C:199 , ARG C:230 , SER C:231
BINDING SITE FOR RESIDUE DXC C1476
10
BC2
SOFTWARE
PRO C:96 , THR C:98 , GLY C:101 , ARG C:131 , ILE C:139 , LYS C:290 , LEU C:368
BINDING SITE FOR RESIDUE DXC C1477
11
BC3
SOFTWARE
SER C:121 , ASP C:122 , ALA C:124 , THR C:126 , THR C:158 , PHE C:160 , LEU C:392 , ARG C:393 , GLU C:394 , GLU C:427
BINDING SITE FOR RESIDUE DXC C1478
12
BC4
SOFTWARE
THR C:126 , GLU C:133 , LEU C:392 , SER C:425 , ASN C:462
BINDING SITE FOR RESIDUE DXC C1479
13
BC5
SOFTWARE
ARG C:131 , ILE C:135 , SER C:138 , LYS C:290 , GLU C:331
BINDING SITE FOR RESIDUE DXC C1480
14
BC6
SOFTWARE
GLU C:331
BINDING SITE FOR RESIDUE SO4 C1481
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(, 0)
Info
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Exons
(0, 0)
Info
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(3, 16)
Info
All SCOP Domains
1a: SCOP_d4acaa3 (A:272-387)
1b: SCOP_d4acab3 (B:272-387)
1c: SCOP_d4acac3 (C:272-387)
1d: SCOP_d4acad3 (D:272-387)
2a: SCOP_d4acaa1 (A:180-271)
2b: SCOP_d4acab1 (B:180-271)
2c: SCOP_d4acab2 (B:390-468)
2d: SCOP_d4acac1 (C:180-271)
2e: SCOP_d4acac2 (C:390-468)
2f: SCOP_d4acad1 (D:180-271)
2g: SCOP_d4acad2 (D:390-468)
2h: SCOP_d4acaa2 (A:390-468)
3a: SCOP_d4acaa4 (A:1-179)
3b: SCOP_d4acab4 (B:1-179)
3c: SCOP_d4acac4 (C:1-179)
3d: SCOP_d4acad4 (D:2-179)
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(
)
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(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Elongation factor/aminomethyltransferase common domain
(82)
Superfamily
:
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
(67)
Family
:
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
(48)
Protein domain
:
Elongation factor SelB, domain 3
(3)
Methanococcus maripaludis [TaxId: 39152]
(3)
1a
d4acaa3
A:272-387
1b
d4acab3
B:272-387
1c
d4acac3
C:272-387
1d
d4acad3
D:272-387
Fold
:
Reductase/isomerase/elongation factor common domain
(381)
Superfamily
:
Translation proteins
(218)
Family
:
Elongation factors
(77)
Protein domain
:
Elongation factor SelB, domains 2 and 4
(3)
Methanococcus maripaludis [TaxId: 39152]
(3)
2a
d4acaa1
A:180-271
2b
d4acab1
B:180-271
2c
d4acab2
B:390-468
2d
d4acac1
C:180-271
2e
d4acac2
C:390-468
2f
d4acad1
D:180-271
2g
d4acad2
D:390-468
2h
d4acaa2
A:390-468
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
G proteins
(693)
Protein domain
:
Elongation factor SelB, N-terminal domain
(3)
Methanococcus maripaludis [TaxId: 39152]
(3)
3a
d4acaa4
A:1-179
3b
d4acab4
B:1-179
3c
d4acac4
C:1-179
3d
d4acad4
D:2-179
[
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CATH Domains
(0, 0 ; only for superseded entry 1WB2: 3,14)
Info
all CATH domains
1a: CATH_1wb2C01 ()
1b: CATH_1wb2D01 ()
1c: CATH_1wb2B01 ()
1d: CATH_1wb2A01 ()
2a: CATH_1wb2C03 ()
2b: CATH_1wb2D03 ()
2c: CATH_1wb2A02 ()
2d: CATH_1wb2C02 ()
2e: CATH_1wb2D02 ()
2f: CATH_1wb2B02 ()
2g: CATH_1wb2A03 ()
2h: CATH_1wb2B03 ()
3a: CATH_1wb2C04 ()
3b: CATH_1wb2A04 ()
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Chain C
Asymmetric Unit 1
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