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4ACA
Biol. Unit 1
Info
Asym.Unit (658 KB)
Biol.Unit 1 (159 KB)
Biol.Unit 2 (163 KB)
Biol.Unit 3 (173 KB)
Biol.Unit 4 (165 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF TRANSLATION ELONGATION FACTOR SELB FROM METHANOCOCCUS MARIPALUDIS, APO FORM
Authors
:
M. Leibundgut, C. Frick, M. Thanbichler, A. Boeck, N. Ban
Date
:
14 Dec 11 (Deposition) - 07 Nov 12 (Release) - 07 Nov 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.15
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Selenocysteine, Translation, Secis Element, Ef-Sec, Sec-Trna(Sec)
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
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Reference
:
M. Leibundgut, C. Frick, M. Thanbichler, A. Bock, N. Ban
Selenocysteine Trna-Specific Elongation Factor Selb Is A Structural Chimaera Of Elongation And Initiation Factors.
Embo J. V. 24 11 2005
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Hetero Components
(1, 4)
Info
All Hetero Components
1a: GUANOSINE-5'-MONOPHOSPHATE (5GPa)
2a: S-(METHYLMERCURY)-L-CYSTEINE (CMHa)
2b: S-(METHYLMERCURY)-L-CYSTEINE (CMHb)
2c: S-(METHYLMERCURY)-L-CYSTEINE (CMHc)
2d: S-(METHYLMERCURY)-L-CYSTEINE (CMHd)
2e: S-(METHYLMERCURY)-L-CYSTEINE (CMHe)
2f: S-(METHYLMERCURY)-L-CYSTEINE (CMHf)
2g: S-(METHYLMERCURY)-L-CYSTEINE (CMHg)
2h: S-(METHYLMERCURY)-L-CYSTEINE (CMHh)
2i: S-(METHYLMERCURY)-L-CYSTEINE (CMHi)
2j: S-(METHYLMERCURY)-L-CYSTEINE (CMHj)
2k: S-(METHYLMERCURY)-L-CYSTEINE (CMHk)
2l: S-(METHYLMERCURY)-L-CYSTEINE (CMHl)
2m: S-(METHYLMERCURY)-L-CYSTEINE (CMHm)
2n: S-(METHYLMERCURY)-L-CYSTEINE (CMHn)
2o: S-(METHYLMERCURY)-L-CYSTEINE (CMHo)
2p: S-(METHYLMERCURY)-L-CYSTEINE (CMHp)
3a: (3ALPHA,5BETA,12ALPHA)-3,12-DIHYDR... (DXCa)
3b: (3ALPHA,5BETA,12ALPHA)-3,12-DIHYDR... (DXCb)
3c: (3ALPHA,5BETA,12ALPHA)-3,12-DIHYDR... (DXCc)
3d: (3ALPHA,5BETA,12ALPHA)-3,12-DIHYDR... (DXCd)
3e: (3ALPHA,5BETA,12ALPHA)-3,12-DIHYDR... (DXCe)
3f: (3ALPHA,5BETA,12ALPHA)-3,12-DIHYDR... (DXCf)
3g: (3ALPHA,5BETA,12ALPHA)-3,12-DIHYDR... (DXCg)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
4e: SULFATE ION (SO4e)
4f: SULFATE ION (SO4f)
4g: SULFATE ION (SO4g)
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Label:
No.
Name
Count
Type
Full Name
1
5GP
-1
Ligand/Ion
GUANOSINE-5'-MONOPHOSPHATE
2
CMH
4
Mod. Amino Acid
S-(METHYLMERCURY)-L-CYSTEINE
3
DXC
-1
Ligand/Ion
(3ALPHA,5BETA,12ALPHA)-3,12-DIHYDROXYCHOLAN-24-OIC ACID
4
SO4
-1
Ligand/Ion
SULFATE ION
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Sites
(1, 1)
Info
All Sites
1: AC4 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC4
SOFTWARE
ARG A:230 , SER A:238 , PRO B:96 , LYS B:97 , THR B:98 , MET B:104 , LEU B:105 , ILE B:139 , THR B:143 , ILE B:288
BINDING SITE FOR RESIDUE 5GP B1474
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(3, 16)
Info
All SCOP Domains
1a: SCOP_d4acaa3 (A:272-387)
1b: SCOP_d4acab3 (B:272-387)
1c: SCOP_d4acac3 (C:272-387)
1d: SCOP_d4acad3 (D:272-387)
2a: SCOP_d4acaa1 (A:180-271)
2b: SCOP_d4acab1 (B:180-271)
2c: SCOP_d4acab2 (B:390-468)
2d: SCOP_d4acac1 (C:180-271)
2e: SCOP_d4acac2 (C:390-468)
2f: SCOP_d4acad1 (D:180-271)
2g: SCOP_d4acad2 (D:390-468)
2h: SCOP_d4acaa2 (A:390-468)
3a: SCOP_d4acaa4 (A:1-179)
3b: SCOP_d4acab4 (B:1-179)
3c: SCOP_d4acac4 (C:1-179)
3d: SCOP_d4acad4 (D:2-179)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Elongation factor/aminomethyltransferase common domain
(82)
Superfamily
:
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
(67)
Family
:
EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
(48)
Protein domain
:
Elongation factor SelB, domain 3
(3)
Methanococcus maripaludis [TaxId: 39152]
(3)
1a
d4acaa3
A:272-387
1b
d4acab3
B:272-387
1c
d4acac3
C:272-387
1d
d4acad3
D:272-387
Fold
:
Reductase/isomerase/elongation factor common domain
(381)
Superfamily
:
Translation proteins
(218)
Family
:
Elongation factors
(77)
Protein domain
:
Elongation factor SelB, domains 2 and 4
(3)
Methanococcus maripaludis [TaxId: 39152]
(3)
2a
d4acaa1
A:180-271
2b
d4acab1
B:180-271
2c
d4acab2
B:390-468
2d
d4acac1
C:180-271
2e
d4acac2
C:390-468
2f
d4acad1
D:180-271
2g
d4acad2
D:390-468
2h
d4acaa2
A:390-468
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
G proteins
(693)
Protein domain
:
Elongation factor SelB, N-terminal domain
(3)
Methanococcus maripaludis [TaxId: 39152]
(3)
3a
d4acaa4
A:1-179
3b
d4acab4
B:1-179
3c
d4acac4
C:1-179
3d
d4acad4
D:2-179
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CATH Domains
(0, 0 ; only for superseded entry 1WB2: 3,14)
Info
all CATH domains
1a: CATH_1wb2C01 ()
1b: CATH_1wb2D01 ()
1c: CATH_1wb2B01 ()
1d: CATH_1wb2A01 ()
2a: CATH_1wb2C03 ()
2b: CATH_1wb2D03 ()
2c: CATH_1wb2A02 ()
2d: CATH_1wb2C02 ()
2e: CATH_1wb2D02 ()
2f: CATH_1wb2B02 ()
2g: CATH_1wb2A03 ()
2h: CATH_1wb2B03 ()
3a: CATH_1wb2C04 ()
3b: CATH_1wb2A04 ()
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (658 KB)
Header - Asym.Unit
Biol.Unit 1 (159 KB)
Header - Biol.Unit 1
Biol.Unit 2 (163 KB)
Header - Biol.Unit 2
Biol.Unit 3 (173 KB)
Header - Biol.Unit 3
Biol.Unit 4 (165 KB)
Header - Biol.Unit 4
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